RNA–Protein interactions for RNA: ENST00000508466.1

LIMCH1-207, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 2

Gene LIMCH1, Length 3,051 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-207ENST00000508466 PANK4Q9NVE7 773 aa8.14□□□□□ -1.11
LIMCH1-207ENST00000508466 MAP3K2Q9Y2U5 619 aa8.14□□□□□ -1.11
LIMCH1-207ENST00000508466 ARHGEF5Q12774 1597 aa8.13□□□□□ -1.11
LIMCH1-207ENST00000508466 hCG_2014768A0A024R1R8 64 aa8.13□□□□□ -1.11
LIMCH1-207ENST00000508466 E7EWF7 191 aa8.13□□□□□ -1.11
LIMCH1-207ENST00000508466 HSF2BPO75031 334 aa8.13□□□□□ -1.11
LIMCH1-207ENST00000508466 AMPD2Q01433 879 aa8.13□□□□□ -1.11
LIMCH1-207ENST00000508466 DDR1Q08345 913 aa8.13□□□□□ -1.11
LIMCH1-207ENST00000508466 DPYDQ12882 1025 aa8.13□□□□□ -1.11
LIMCH1-207ENST00000508466 WHAMMP3Q1A5X7 153 aa8.13□□□□□ -1.11
LIMCH1-207ENST00000508466 MIGA2Q7L4E1 593 aa8.13□□□□□ -1.11
LIMCH1-207ENST00000508466 MICU3Q86XE3 530 aa8.13□□□□□ -1.11
LIMCH1-207ENST00000508466 DNAAF5Q86Y56 855 aa8.13□□□□□ -1.11
LIMCH1-207ENST00000508466 MARCH10Q8NA82 808 aaPredicted RBP8.13□□□□□ -1.11
LIMCH1-207ENST00000508466 PCMTD1Q96MG8 357 aaPredicted RBP8.13□□□□□ -1.11
LIMCH1-207ENST00000508466 CCDC85AQ96PX6 553 aaPredicted RBP8.13□□□□□ -1.11
LIMCH1-207ENST00000508466 NOD2Q9HC29 1040 aa8.13□□□□□ -1.11
LIMCH1-207ENST00000508466 ZNF233A6NK53 670 aa8.13□□□□□ -1.11
LIMCH1-207ENST00000508466 MFAP3LO75121 409 aa8.13□□□□□ -1.11
LIMCH1-207ENST00000508466 PLEKP08567 350 aaPredicted RBP8.13□□□□□ -1.11
LIMCH1-207ENST00000508466 ERFP50548 548 aa8.13□□□□□ -1.11
LIMCH1-207ENST00000508466 IRX1P78414 480 aaPredicted RBP8.13□□□□□ -1.11
LIMCH1-207ENST00000508466 ADCY2Q08462 1091 aa8.13□□□□□ -1.11
LIMCH1-207ENST00000508466 MAP3K12Q12852 859 aa8.13□□□□□ -1.11
LIMCH1-207ENST00000508466 RASGRP2Q7LDG7 609 aa8.13□□□□□ -1.11
LIMCH1-207ENST00000508466 TMC4Q7Z404 712 aa8.13□□□□□ -1.11
LIMCH1-207ENST00000508466 ARHGEF25Q86VW2 580 aa8.13□□□□□ -1.11
LIMCH1-207ENST00000508466 FCHSD1Q86WN1 690 aa8.13□□□□□ -1.11
LIMCH1-207ENST00000508466 DDX42Q86XP3 938 aaKnown RBP eCLIP8.13□□□□□ -1.11
LIMCH1-207ENST00000508466 VPS37DQ86XT2 251 aa8.13□□□□□ -1.11
LIMCH1-207ENST00000508466 IL17REQ8NFR9 667 aa8.13□□□□□ -1.11
LIMCH1-207ENST00000508466 UHMK1Q8TAS1 419 aaKnown RBP8.13□□□□□ -1.11
LIMCH1-207ENST00000508466 SUCLG2Q96I99 432 aa8.13□□□□□ -1.11
LIMCH1-207ENST00000508466 RSRC1Q96IZ7 334 aaKnown RBP8.13□□□□□ -1.11
LIMCH1-207ENST00000508466 EPSTI1Q96J88 318 aa8.13□□□□□ -1.11
LIMCH1-207ENST00000508466 PLIN2Q99541 437 aa8.13□□□□□ -1.11
LIMCH1-207ENST00000508466 SH3GL2Q99962 352 aa8.13□□□□□ -1.11
LIMCH1-207ENST00000508466 BPIFA3Q9BQP9 254 aa8.13□□□□□ -1.11
LIMCH1-207ENST00000508466 LGR6Q9HBX8 967 aa8.13□□□□□ -1.11
LIMCH1-207ENST00000508466 PACSIN2Q9UNF0 486 aaPredicted RBP8.13□□□□□ -1.11
LIMCH1-207ENST00000508466 ABCA6Q8N139 1617 aa8.13□□□□□ -1.11
LIMCH1-207ENST00000508466 MYOM2P54296 1465 aa8.13□□□□□ -1.11
LIMCH1-207ENST00000508466 CALRP27797 417 aaKnown RBP8.12□□□□□ -1.11
LIMCH1-207ENST00000508466 GUCY2DQ02846 1103 aa8.12□□□□□ -1.11
LIMCH1-207ENST00000508466 RNASELQ05823 741 aaKnown RBP8.12□□□□□ -1.11
LIMCH1-207ENST00000508466 TMEM62Q0P6H9 643 aa8.12□□□□□ -1.11
LIMCH1-207ENST00000508466 WLSQ5T9L3 541 aa8.12□□□□□ -1.11
LIMCH1-207ENST00000508466 MSL1Q68DK7 614 aa8.12□□□□□ -1.11
LIMCH1-207ENST00000508466 WDR93Q6P2C0 686 aa8.12□□□□□ -1.11
LIMCH1-207ENST00000508466 AMOTL1Q8IY63 956 aa8.12□□□□□ -1.11
LIMCH1-207ENST00000508466 RBM28Q9NW13 759 aaKnown RBP8.12□□□□□ -1.11
LIMCH1-207ENST00000508466 ABCF2Q9UG63 623 aa8.12□□□□□ -1.11
LIMCH1-207ENST00000508466 CTNND2Q9UQB3 1225 aa8.12□□□□□ -1.11
LIMCH1-207ENST00000508466 EPN1Q9Y6I3 576 aaPredicted RBP8.12□□□□□ -1.11
LIMCH1-207ENST00000508466 A0A1W2PQ27 194 aa8.12□□□□□ -1.11
LIMCH1-207ENST00000508466 A0A1W2PQ64 194 aa8.12□□□□□ -1.11
LIMCH1-207ENST00000508466 A0A1W2PQD8 194 aa8.12□□□□□ -1.11
LIMCH1-207ENST00000508466 BUB1O43683 1085 aa8.12□□□□□ -1.11
LIMCH1-207ENST00000508466 SCTRP47872 440 aa8.12□□□□□ -1.11
LIMCH1-207ENST00000508466 KIF23Q02241 960 aaPredicted RBP8.12□□□□□ -1.11
LIMCH1-207ENST00000508466 TFCP2Q12800 502 aa8.12□□□□□ -1.11
LIMCH1-207ENST00000508466 POSTNQ15063 836 aa8.12□□□□□ -1.11
LIMCH1-207ENST00000508466 PTGISQ16647 500 aa8.12□□□□□ -1.11
LIMCH1-207ENST00000508466 TBC1D25Q3MII6 688 aa8.12□□□□□ -1.11
LIMCH1-207ENST00000508466 TLDC1Q6P9B6 456 aa8.12□□□□□ -1.11
LIMCH1-207ENST00000508466 C14orf37Q86TY3 774 aa8.12□□□□□ -1.11
LIMCH1-207ENST00000508466 CYFIP2Q96F07 1278 aa8.12□□□□□ -1.11
LIMCH1-207ENST00000508466 SH3GL3Q99963 347 aa8.12□□□□□ -1.11
LIMCH1-207ENST00000508466 EPN3Q9H201 632 aa8.12□□□□□ -1.11
LIMCH1-207ENST00000508466 VPS54Q9P1Q0 977 aa8.12□□□□□ -1.11
LIMCH1-207ENST00000508466 LNPEPQ9UIQ6 1025 aa8.12□□□□□ -1.11
LIMCH1-207ENST00000508466 TUBE1Q9UJT0 475 aa8.12□□□□□ -1.11
LIMCH1-207ENST00000508466 TRIM33Q9UPN9 1127 aa8.12□□□□□ -1.11
LIMCH1-207ENST00000508466 NSD2O96028 1365 aa8.12□□□□□ -1.11
LIMCH1-207ENST00000508466 TULP4Q9NRJ4 1543 aa8.12□□□□□ -1.11
LIMCH1-207ENST00000508466 FANCAO15360 1455 aa8.11□□□□□ -1.11
LIMCH1-207ENST00000508466 FAM205CA6NFA0 338 aa8.11□□□□□ -1.11
LIMCH1-207ENST00000508466 BTBD18B2RXH4 712 aa8.11□□□□□ -1.11
LIMCH1-207ENST00000508466 SNUPNO95149 360 aaKnown RBP8.11□□□□□ -1.11
LIMCH1-207ENST00000508466 NR1D1P20393 614 aa8.11□□□□□ -1.11
LIMCH1-207ENST00000508466 TUBP50607 506 aa8.11□□□□□ -1.11
LIMCH1-207ENST00000508466 POLE2P56282 527 aa8.11□□□□□ -1.11
LIMCH1-207ENST00000508466 UBXN1Q04323 297 aa8.11□□□□□ -1.11
LIMCH1-207ENST00000508466 ZKSCAN8Q15776 578 aaPredicted RBP8.11□□□□□ -1.11
LIMCH1-207ENST00000508466 EPHA10Q5JZY3 1008 aa8.11□□□□□ -1.11
LIMCH1-207ENST00000508466 CFAP58Q5T655 872 aa8.11□□□□□ -1.11
LIMCH1-207ENST00000508466 TRIM74Q86UV6 250 aa8.11□□□□□ -1.11
LIMCH1-207ENST00000508466 TRIM73Q86UV7 250 aa8.11□□□□□ -1.11
LIMCH1-207ENST00000508466 STAG1Q8WVM7 1258 aa8.11□□□□□ -1.11
LIMCH1-207ENST00000508466 ZNF570Q96NI8 536 aa8.11□□□□□ -1.11
LIMCH1-207ENST00000508466 ALG1Q9BT22 464 aa8.11□□□□□ -1.11
LIMCH1-207ENST00000508466 EPB41L5Q9HCM4 733 aa8.11□□□□□ -1.11
LIMCH1-207ENST00000508466 AGPAT5Q9NUQ2 364 aa8.11□□□□□ -1.11
LIMCH1-207ENST00000508466 DBNLQ9UJU6 430 aaKnown RBP8.11□□□□□ -1.11
LIMCH1-207ENST00000508466 LEMD3Q9Y2U8 911 aa8.11□□□□□ -1.11
LIMCH1-207ENST00000508466 YEATS2Q9ULM3 1422 aa8.11□□□□□ -1.11
LIMCH1-207ENST00000508466 KDRP35968 1356 aa8.11□□□□□ -1.11
LIMCH1-207ENST00000508466 GOLGB1Q14789 3259 aaKnown RBP8.11□□□□□ -1.11
LIMCH1-207ENST00000508466 ANKRD18BA2A2Z9 1011 aa8.11□□□□□ -1.11
LIMCH1-207ENST00000508466 TRIM49BA6NDI0 452 aa8.11□□□□□ -1.11
Retrieved 100 of 20,778 RNA–protein pairs in 66.8 ms