RNA–Protein interactions for RNA: ENST00000498259.1

SF3A1-210, Transcript of splicing factor 3a subunit 1, humanhuman

TSL 2

Gene SF3A1, Length 875 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A1-210ENST00000498259 GRIN3BO60391 1043 aa9.79□□□□□ -0.84
SF3A1-210ENST00000498259 CTDNEP1O95476 244 aa9.79□□□□□ -0.84
SF3A1-210ENST00000498259 PARP1P09874 1014 aaKnown RBP9.79□□□□□ -0.84
SF3A1-210ENST00000498259 LMOD1P29536 600 aaPredicted RBP9.79□□□□□ -0.84
SF3A1-210ENST00000498259 ST3GAL1Q11201 340 aa9.79□□□□□ -0.84
SF3A1-210ENST00000498259 PKP1Q13835 747 aa9.79□□□□□ -0.84
SF3A1-210ENST00000498259 SLC4A8Q2Y0W8 1093 aa9.79□□□□□ -0.84
SF3A1-210ENST00000498259 DPY19L2Q6NUT2 758 aa9.79□□□□□ -0.84
SF3A1-210ENST00000498259 METTL16Q86W50 562 aaKnown RBP9.79□□□□□ -0.84
SF3A1-210ENST00000498259 CCDC12Q8WUD4 166 aaPredicted RBP9.79□□□□□ -0.84
SF3A1-210ENST00000498259 SYT17Q9BSW7 474 aa9.79□□□□□ -0.84
SF3A1-210ENST00000498259 ALG1Q9BT22 464 aa9.79□□□□□ -0.84
SF3A1-210ENST00000498259 SH2D4AQ9H788 454 aa9.79□□□□□ -0.84
SF3A1-210ENST00000498259 VEZTQ9HBM0 779 aa9.79□□□□□ -0.84
SF3A1-210ENST00000498259 DDX4Q9NQI0 724 aaKnown RBP9.79□□□□□ -0.84
SF3A1-210ENST00000498259 GPHNQ9NQX3 736 aaPredicted RBP9.79□□□□□ -0.84
SF3A1-210ENST00000498259 MTMR4Q9NYA4 1195 aa9.79□□□□□ -0.84
SF3A1-210ENST00000498259 FAM198AQ9UFP1 575 aa9.79□□□□□ -0.84
SF3A1-210ENST00000498259 CNOT7Q9UIV1 285 aaKnown RBP9.79□□□□□ -0.84
SF3A1-210ENST00000498259 ZBTB12Q9Y330 459 aaPredicted RBP9.79□□□□□ -0.84
SF3A1-210ENST00000498259 ZDHHC9Q9Y397 364 aa9.79□□□□□ -0.84
SF3A1-210ENST00000498259 GJA3Q9Y6H8 435 aa9.79□□□□□ -0.84
SF3A1-210ENST00000498259 FER1L6Q2WGJ9 1857 aa9.79□□□□□ -0.84
SF3A1-210ENST00000498259 BAZ2AQ9UIF9 1905 aaKnown RBP9.78□□□□□ -0.84
SF3A1-210ENST00000498259 CALML3P27482 149 aa9.78□□□□□ -0.84
SF3A1-210ENST00000498259 HOXD11P31277 338 aaPredicted RBP9.78□□□□□ -0.84
SF3A1-210ENST00000498259 NOVP48745 357 aa9.78□□□□□ -0.84
SF3A1-210ENST00000498259 NFIAQ12857 509 aa9.78□□□□□ -0.84
SF3A1-210ENST00000498259 TRAF1Q13077 416 aa9.78□□□□□ -0.84
SF3A1-210ENST00000498259 COL9A3Q14050 684 aaPredicted RBP9.78□□□□□ -0.84
SF3A1-210ENST00000498259 NTRK3Q16288 839 aa9.78□□□□□ -0.84
SF3A1-210ENST00000498259 ABCB5Q2M3G0 1257 aa9.78□□□□□ -0.84
SF3A1-210ENST00000498259 ASPRV1Q53RT3 343 aa9.78□□□□□ -0.84
SF3A1-210ENST00000498259 GPATCH4Q5T3I0 446 aaKnown RBP9.78□□□□□ -0.84
SF3A1-210ENST00000498259 RCSD1Q6JBY9 416 aa9.78□□□□□ -0.84
SF3A1-210ENST00000498259 TATDN1Q6P1N9 297 aa9.78□□□□□ -0.84
SF3A1-210ENST00000498259 TMTC3Q6ZXV5 915 aa9.78□□□□□ -0.84
SF3A1-210ENST00000498259 APOBEC3FQ8IUX4 373 aaKnown RBP9.78□□□□□ -0.84
SF3A1-210ENST00000498259 CCDC144CPQ8IYA2 1237 aa9.78□□□□□ -0.84
SF3A1-210ENST00000498259 TMEM47Q9BQJ4 181 aa9.78□□□□□ -0.84
SF3A1-210ENST00000498259 XPO5Q9HAV4 1204 aaKnown RBP eCLIP9.78□□□□□ -0.84
SF3A1-210ENST00000498259 IL17RBQ9NRM6 502 aa9.78□□□□□ -0.84
SF3A1-210ENST00000498259 SEC63Q9UGP8 760 aaKnown RBP9.78□□□□□ -0.84
SF3A1-210ENST00000498259 PPP2R3BQ9Y5P8 575 aa9.78□□□□□ -0.84
SF3A1-210ENST00000498259 BRCA1P38398 1863 aaKnown RBP9.78□□□□□ -0.84
SF3A1-210ENST00000498259 ZC3H4Q9UPT8 1303 aaKnown RBP9.78□□□□□ -0.84
SF3A1-210ENST00000498259 PSME4Q14997 1843 aa9.77□□□□□ -0.84
SF3A1-210ENST00000498259 TCP10L2B9ZVM9 353 aa9.77□□□□□ -0.85
SF3A1-210ENST00000498259 hCG_1984214I3L0E3 225 aa9.77□□□□□ -0.85
SF3A1-210ENST00000498259 WNT10BO00744 389 aa9.77□□□□□ -0.85
SF3A1-210ENST00000498259 TRAK2O60296 914 aa9.77□□□□□ -0.85
SF3A1-210ENST00000498259 CDC27P30260 824 aa9.77□□□□□ -0.85
SF3A1-210ENST00000498259 GMPSP49915 693 aaPredicted RBP9.77□□□□□ -0.85
SF3A1-210ENST00000498259 GRM4Q14833 912 aa9.77□□□□□ -0.85
SF3A1-210ENST00000498259 FOXD4L5Q5VV16 416 aaPredicted RBP9.77□□□□□ -0.85
SF3A1-210ENST00000498259 DCAF15Q66K64 600 aa9.77□□□□□ -0.85
SF3A1-210ENST00000498259 GALNT17Q6IS24 598 aa9.77□□□□□ -0.85
SF3A1-210ENST00000498259 MICALL2Q8IY33 904 aa9.77□□□□□ -0.85
SF3A1-210ENST00000498259 ZNF713Q8N859 430 aaPredicted RBP9.77□□□□□ -0.85
SF3A1-210ENST00000498259 TMEM87AQ8NBN3 555 aa9.77□□□□□ -0.85
SF3A1-210ENST00000498259 SLC44A5Q8NCS7 719 aa9.77□□□□□ -0.85
SF3A1-210ENST00000498259 CCDC148Q8NFR7 591 aa9.77□□□□□ -0.85
SF3A1-210ENST00000498259 FOXD4L4Q8WXT5 416 aaPredicted RBP9.77□□□□□ -0.85
SF3A1-210ENST00000498259 CEP95Q96GE4 821 aa9.77□□□□□ -0.85
SF3A1-210ENST00000498259 MYL10Q9BUA6 226 aa9.77□□□□□ -0.85
SF3A1-210ENST00000498259 ARHGEF10LQ9HCE6 1279 aa9.77□□□□□ -0.85
SF3A1-210ENST00000498259 SH3GLB2Q9NR46 395 aa9.77□□□□□ -0.85
SF3A1-210ENST00000498259 NYAP2Q9P242 653 aa9.77□□□□□ -0.85
SF3A1-210ENST00000498259 TACC3Q9Y6A5 838 aa9.77□□□□□ -0.85
SF3A1-210ENST00000498259 DDX49Q9Y6V7 483 aaKnown RBP9.77□□□□□ -0.85
SF3A1-210ENST00000498259 ELP1O95163 1332 aa9.77□□□□□ -0.85
SF3A1-210ENST00000498259 ARFGEF1Q9Y6D6 1849 aa9.77□□□□□ -0.85
SF3A1-210ENST00000498259 CLRN2A0PK11 232 aa9.76□□□□□ -0.85
SF3A1-210ENST00000498259 DDTLA6NHG4 134 aaPredicted RBP9.76□□□□□ -0.85
SF3A1-210ENST00000498259 NMT2O60551 498 aa9.76□□□□□ -0.85
SF3A1-210ENST00000498259 PRPF40AO75400 957 aaKnown RBP9.76□□□□□ -0.85
SF3A1-210ENST00000498259 FDPSP14324 419 aaKnown RBP9.76□□□□□ -0.85
SF3A1-210ENST00000498259 RXRAP19793 462 aa9.76□□□□□ -0.85
SF3A1-210ENST00000498259 SHMT1P34896 483 aa9.76□□□□□ -0.85
SF3A1-210ENST00000498259 CACNB3P54284 484 aa9.76□□□□□ -0.85
SF3A1-210ENST00000498259 UBE2HP62256 183 aa9.76□□□□□ -0.85
SF3A1-210ENST00000498259 RASSF7Q02833 373 aa9.76□□□□□ -0.85
SF3A1-210ENST00000498259 KLHL40Q2TBA0 621 aa9.76□□□□□ -0.85
SF3A1-210ENST00000498259 KIF4BQ2VIQ3 1234 aa9.76□□□□□ -0.85
SF3A1-210ENST00000498259 CDC37L1Q7L3B6 337 aa9.76□□□□□ -0.85
SF3A1-210ENST00000498259 JMYQ8N9B5 988 aa9.76□□□□□ -0.85
SF3A1-210ENST00000498259 PHKBQ93100 1093 aa9.76□□□□□ -0.85
SF3A1-210ENST00000498259 MKL1Q969V6 931 aa9.76□□□□□ -0.85
SF3A1-210ENST00000498259 RRP36Q96EU6 259 aaKnown RBP9.76□□□□□ -0.85
SF3A1-210ENST00000498259 ZBED3Q96IU2 234 aaPredicted RBP9.76□□□□□ -0.85
SF3A1-210ENST00000498259 SPZ1Q9BXG8 430 aa9.76□□□□□ -0.85
SF3A1-210ENST00000498259 FOXP1Q9H334 677 aaPredicted RBP9.76□□□□□ -0.85
SF3A1-210ENST00000498259 SENP2Q9HC62 589 aa9.76□□□□□ -0.85
SF3A1-210ENST00000498259 FAM217BQ9NTX9 383 aaPredicted RBP9.76□□□□□ -0.85
SF3A1-210ENST00000498259 CLIP2Q9UDT6 1046 aa9.76□□□□□ -0.85
SF3A1-210ENST00000498259 CEP131Q9UPN4 1083 aa9.76□□□□□ -0.85
SF3A1-210ENST00000498259 V9GY48 417 aaPredicted RBP9.76□□□□□ -0.85
SF3A1-210ENST00000498259 FOCADQ5VW36 1801 aa9.76□□□□□ -0.85
SF3A1-210ENST00000498259 MYH1P12882 1939 aa9.76□□□□□ -0.85
SF3A1-210ENST00000498259 SCN9AQ15858 1988 aa9.75□□□□□ -0.85
Retrieved 100 of 20,778 RNA–protein pairs in 166.1 ms