RNA–Protein interactions for RNA: ENST00000495100.1

GPC1-209, Transcript of glypican 1, humanhuman

TSL 1 (best)

Gene GPC1, Length 3,525 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GPC1-209ENST00000495100 NEK11Q8NG66 645 aa15.27■□□□□ 0.03
GPC1-209ENST00000495100 MACROD2A1Z1Q3 448 aa15.26■□□□□ 0.03
GPC1-209ENST00000495100 WNT7AO00755 349 aa15.26■□□□□ 0.03
GPC1-209ENST00000495100 LMAN1P49257 510 aa15.26■□□□□ 0.03
GPC1-209ENST00000495100 ANKRD13CQ8N6S4 541 aa15.26■□□□□ 0.03
GPC1-209ENST00000495100 ENAHQ8N8S7 591 aaPredicted RBP15.26■□□□□ 0.03
GPC1-209ENST00000495100 ERO1AQ96HE7 468 aa15.26■□□□□ 0.03
GPC1-209ENST00000495100 CDK5RAP3Q96JB5 506 aa15.26■□□□□ 0.03
GPC1-209ENST00000495100 ZSCAN10Q96SZ4 725 aaPredicted RBP15.26■□□□□ 0.03
GPC1-209ENST00000495100 MAGEC2Q9UBF1 373 aaPredicted RBP15.26■□□□□ 0.03
GPC1-209ENST00000495100 DACH1Q9UI36 760 aa15.26■□□□□ 0.03
GPC1-209ENST00000495100 RBL2Q08999 1139 aa15.26■□□□□ 0.03
GPC1-209ENST00000495100 ZNF652Q9Y2D9 606 aa15.26■□□□□ 0.03
GPC1-209ENST00000495100 DNAJC21Q5F1R6 531 aaKnown RBP15.25■□□□□ 0.03
GPC1-209ENST00000495100 SPECC1LQ69YQ0 1117 aa15.25■□□□□ 0.03
GPC1-209ENST00000495100 TACC3Q9Y6A5 838 aa15.25■□□□□ 0.03
GPC1-209ENST00000495100 SYNRGQ9UMZ2 1314 aa15.25■□□□□ 0.03
GPC1-209ENST00000495100 TRIM21P19474 475 aaKnown RBP15.25■□□□□ 0.03
GPC1-209ENST00000495100 MTIF2P46199 727 aaKnown RBP15.25■□□□□ 0.03
GPC1-209ENST00000495100 TOB1P50616 345 aaPredicted RBP15.25■□□□□ 0.03
GPC1-209ENST00000495100 PPP2R3AQ06190 1150 aa15.25■□□□□ 0.03
GPC1-209ENST00000495100 DEF6Q9H4E7 631 aa15.25■□□□□ 0.03
GPC1-209ENST00000495100 ANKRD65E5RJM6 399 aa15.25■□□□□ 0.03
GPC1-209ENST00000495100 HIBADHP31937 336 aaKnown RBP15.25■□□□□ 0.03
GPC1-209ENST00000495100 ITPK1Q13572 414 aa15.25■□□□□ 0.03
GPC1-209ENST00000495100 TXNRD3Q86VQ6 643 aa15.25■□□□□ 0.03
GPC1-209ENST00000495100 GJA10Q969M2 543 aa15.25■□□□□ 0.03
GPC1-209ENST00000495100 CRNKL1Q9BZJ0 848 aaKnown RBP15.25■□□□□ 0.03
GPC1-209ENST00000495100 GPCPD1Q9NPB8 672 aa15.25■□□□□ 0.03
GPC1-209ENST00000495100 OGFRQ9NZT2 677 aa15.25■□□□□ 0.03
GPC1-209ENST00000495100 FRMPD2Q68DX3 1309 aaPredicted RBP15.24■□□□□ 0.03
GPC1-209ENST00000495100 KRT9P35527 623 aa15.24■□□□□ 0.03
GPC1-209ENST00000495100 TXKP42681 527 aa15.24■□□□□ 0.03
GPC1-209ENST00000495100 CLCN6P51797 869 aa15.24■□□□□ 0.03
GPC1-209ENST00000495100 ASIC1P78348 528 aa15.24■□□□□ 0.03
GPC1-209ENST00000495100 KANSL2Q9H9L4 492 aa15.24■□□□□ 0.03
GPC1-209ENST00000495100 MROH5Q6ZUA9 1318 aa15.24■□□□□ 0.03
GPC1-209ENST00000495100 AKR1B15C9JRZ8 316 aaPredicted RBP15.24■□□□□ 0.03
GPC1-209ENST00000495100 FMNL1O95466 1100 aaPredicted RBP15.24■□□□□ 0.03
GPC1-209ENST00000495100 SLURP2P0DP57 97 aa15.24■□□□□ 0.03
GPC1-209ENST00000495100 NAPAP54920 295 aa15.24■□□□□ 0.03
GPC1-209ENST00000495100 ATL3Q6DD88 541 aa15.24■□□□□ 0.03
GPC1-209ENST00000495100 STAG2Q8N3U4 1231 aa15.24■□□□□ 0.03
GPC1-209ENST00000495100 BMP6P22004 513 aa15.23■□□□□ 0.03
GPC1-209ENST00000495100 RBM6P78332 1123 aaKnown RBP15.23■□□□□ 0.03
GPC1-209ENST00000495100 SOGA3Q5TF21 947 aa15.23■□□□□ 0.03
GPC1-209ENST00000495100 JADE2Q9NQC1 790 aa15.23■□□□□ 0.03
GPC1-209ENST00000495100 FAM217BQ9NTX9 383 aaPredicted RBP15.23■□□□□ 0.03
GPC1-209ENST00000495100 MYO1BO43795 1136 aa15.23■□□□□ 0.03
GPC1-209ENST00000495100 CSF1RP07333 972 aa15.23■□□□□ 0.03
GPC1-209ENST00000495100 CUL4BQ13620 913 aa15.23■□□□□ 0.03
GPC1-209ENST00000495100 MMRN2Q9H8L6 949 aa15.23■□□□□ 0.03
GPC1-209ENST00000495100 LTN1O94822 1766 aa15.23■□□□□ 0.03
GPC1-209ENST00000495100 CCDC175P0C221 793 aa15.23■□□□□ 0.03
GPC1-209ENST00000495100 ZSCAN20P17040 1043 aaPredicted RBP15.23■□□□□ 0.03
GPC1-209ENST00000495100 IFNAR1P17181 557 aa15.23■□□□□ 0.03
GPC1-209ENST00000495100 RPS8P62241 208 aaKnown RBP15.23■□□□□ 0.03
GPC1-209ENST00000495100 CACNB1Q02641 598 aaPredicted RBP15.23■□□□□ 0.03
GPC1-209ENST00000495100 NCAPHQ15003 741 aa15.23■□□□□ 0.03
GPC1-209ENST00000495100 MEX3CQ5U5Q3 659 aaKnown RBP15.23■□□□□ 0.03
GPC1-209ENST00000495100 SMAP1Q8IYB5 467 aaPredicted RBP15.23■□□□□ 0.03
GPC1-209ENST00000495100 CENPHQ9H3R5 247 aa15.23■□□□□ 0.03
GPC1-209ENST00000495100 BIN2Q9UBW5 565 aaPredicted RBP15.23■□□□□ 0.03
GPC1-209ENST00000495100 SETD1AO15047 1707 aaKnown RBP15.23■□□□□ 0.03
GPC1-209ENST00000495100 RFC4P35249 363 aa15.22■□□□□ 0.03
GPC1-209ENST00000495100 MECOMQ03112 1051 aa15.22■□□□□ 0.03
GPC1-209ENST00000495100 CCDC96Q2M329 555 aa15.22■□□□□ 0.03
GPC1-209ENST00000495100 SPTY2D1Q68D10 685 aaPredicted RBP15.22■□□□□ 0.03
GPC1-209ENST00000495100 SUGCTQ9HAC7 445 aa15.22■□□□□ 0.03
GPC1-209ENST00000495100 TNNI2P48788 182 aa15.22■□□□□ 0.03
GPC1-209ENST00000495100 RESP18Q5W5W9 173 aa15.22■□□□□ 0.03
GPC1-209ENST00000495100 ALDH8A1Q9H2A2 487 aaPredicted RBP15.22■□□□□ 0.03
GPC1-209ENST00000495100 TRIM10Q9UDY6 481 aa15.22■□□□□ 0.03
GPC1-209ENST00000495100 TNS3Q68CZ2 1445 aa15.22■□□□□ 0.03
GPC1-209ENST00000495100 CCNT1O60563 726 aaKnown RBP15.22■□□□□ 0.03
GPC1-209ENST00000495100 SF3A3Q12874 501 aaKnown RBP eCLIP15.22■□□□□ 0.03
GPC1-209ENST00000495100 USP17L2Q6R6M4 530 aa15.22■□□□□ 0.03
GPC1-209ENST00000495100 SRRTQ9BXP5 876 aaKnown RBP15.22■□□□□ 0.03
GPC1-209ENST00000495100 UTP3Q9NQZ2 479 aaKnown RBP eCLIP15.22■□□□□ 0.03
GPC1-209ENST00000495100 KRT18P05783 430 aaKnown RBP15.21■□□□□ 0.03
GPC1-209ENST00000495100 CYP27A1Q02318 531 aa15.21■□□□□ 0.03
GPC1-209ENST00000495100 NELFBQ8WX92 580 aa15.21■□□□□ 0.03
GPC1-209ENST00000495100 XRN1Q8IZH2 1706 aaKnown RBP15.21■□□□□ 0.03
GPC1-209ENST00000495100 SRGAP2O75044 1071 aa15.21■□□□□ 0.03
GPC1-209ENST00000495100 TECP42680 631 aa15.21■□□□□ 0.03
GPC1-209ENST00000495100 BMS1Q14692 1282 aaKnown RBP15.21■□□□□ 0.03
GPC1-209ENST00000495100 PTPAQ15257 358 aa15.21■□□□□ 0.03
GPC1-209ENST00000495100 SARM1Q6SZW1 724 aa15.21■□□□□ 0.03
GPC1-209ENST00000495100 RBM43Q6ZSC3 357 aaKnown RBP15.21■□□□□ 0.03
GPC1-209ENST00000495100 LRRC47Q8N1G4 583 aaKnown RBP15.21■□□□□ 0.03
GPC1-209ENST00000495100 CPDO75976 1380 aa15.21■□□□□ 0.02
GPC1-209ENST00000495100 IL6STP40189 918 aaPredicted RBP15.21■□□□□ 0.02
GPC1-209ENST00000495100 TCP10Q12799 353 aa15.21■□□□□ 0.02
GPC1-209ENST00000495100 TBC1D9BQ66K14 1250 aa15.21■□□□□ 0.02
GPC1-209ENST00000495100 VSTM4Q8IW00 320 aa15.21■□□□□ 0.02
GPC1-209ENST00000495100 IQUBQ8NA54 791 aa15.21■□□□□ 0.02
GPC1-209ENST00000495100 ARHGAP23Q9P227 1491 aa15.2■□□□□ 0.02
GPC1-209ENST00000495100 A0A087X0B3 334 aa15.2■□□□□ 0.02
GPC1-209ENST00000495100 FAM196BA6NMK8 535 aa15.2■□□□□ 0.02
GPC1-209ENST00000495100 NTRK3Q16288 839 aa15.2■□□□□ 0.02
Retrieved 100 of 20,778 RNA–protein pairs in 36.1 ms