RNA–Protein interactions for RNA: ENST00000495010.5

VARS-228, Transcript of valyl-tRNA synthetase, humanhuman

TSL 5

Gene VARS, Length 1,007 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VARS-228ENST00000495010 SURF6O75683 361 aaKnown RBP17.4■□□□□ 0.38
VARS-228ENST00000495010 CNGA1P29973 690 aa17.4■□□□□ 0.38
VARS-228ENST00000495010 ATP2B2Q01814 1243 aa17.4■□□□□ 0.38
VARS-228ENST00000495010 RAB3GAP1Q15042 981 aa17.4■□□□□ 0.38
VARS-228ENST00000495010 ZNF512BQ96KM6 892 aaPredicted RBP17.4■□□□□ 0.38
VARS-228ENST00000495010 SENP6Q9GZR1 1112 aaPredicted RBP17.4■□□□□ 0.38
VARS-228ENST00000495010 CABP5Q9NP86 173 aa17.4■□□□□ 0.38
VARS-228ENST00000495010 PRKAG2Q9UGJ0 569 aa17.4■□□□□ 0.38
VARS-228ENST00000495010 NDUFB9Q9Y6M9 179 aa17.4■□□□□ 0.38
VARS-228ENST00000495010 SLC15A5A6NIM6 579 aa17.39■□□□□ 0.37
VARS-228ENST00000495010 MSCO60682 206 aa17.39■□□□□ 0.37
VARS-228ENST00000495010 IDH1O75874 414 aaKnown RBP17.39■□□□□ 0.37
VARS-228ENST00000495010 TTC6Q86TZ1 520 aa17.39■□□□□ 0.37
VARS-228ENST00000495010 C12orf42Q96LP6 360 aa17.39■□□□□ 0.37
VARS-228ENST00000495010 PIH1D3Q9NQM4 214 aaKnown RBP17.39■□□□□ 0.37
VARS-228ENST00000495010 FOCADQ5VW36 1801 aa17.38■□□□□ 0.37
VARS-228ENST00000495010 CDK5RAP2Q96SN8 1893 aa17.38■□□□□ 0.37
VARS-228ENST00000495010 POLA2Q14181 598 aa17.38■□□□□ 0.37
VARS-228ENST00000495010 ABCB5Q2M3G0 1257 aa17.38■□□□□ 0.37
VARS-228ENST00000495010 CERKLQ49MI3 558 aaPredicted RBP17.38■□□□□ 0.37
VARS-228ENST00000495010 CATSPERGQ6ZRH7 1159 aa17.38■□□□□ 0.37
VARS-228ENST00000495010 MIGA1Q8NAN2 632 aa17.38■□□□□ 0.37
VARS-228ENST00000495010 SERPINB13Q9UIV8 391 aa17.38■□□□□ 0.37
VARS-228ENST00000495010 TNNQ9UQP3 1299 aa17.38■□□□□ 0.37
VARS-228ENST00000495010 BCAR3O75815 825 aa17.37■□□□□ 0.37
VARS-228ENST00000495010 CNMDO75829 334 aa17.37■□□□□ 0.37
VARS-228ENST00000495010 PTPREP23469 700 aa17.37■□□□□ 0.37
VARS-228ENST00000495010 ATP8B2P98198 1209 aa17.37■□□□□ 0.37
VARS-228ENST00000495010 TATDN1Q6P1N9 297 aa17.37■□□□□ 0.37
VARS-228ENST00000495010 EHD4Q9H223 541 aa17.37■□□□□ 0.37
VARS-228ENST00000495010 DDX20Q9UHI6 824 aaKnown RBP17.37■□□□□ 0.37
VARS-228ENST00000495010 VCAM1P19320 739 aa17.36■□□□□ 0.37
VARS-228ENST00000495010 ATN1P54259 1190 aaPredicted RBP17.36■□□□□ 0.37
VARS-228ENST00000495010 ZKSCAN2Q63HK3 967 aa17.36■□□□□ 0.37
VARS-228ENST00000495010 POTEEQ6S8J3 1075 aa17.36■□□□□ 0.37
VARS-228ENST00000495010 TMEM57Q8N5G2 664 aa17.36■□□□□ 0.37
VARS-228ENST00000495010 MAGEB6Q8N7X4 407 aa17.36■□□□□ 0.37
VARS-228ENST00000495010 SSH3Q8TE77 659 aa17.36■□□□□ 0.37
VARS-228ENST00000495010 LPAR1Q92633 364 aa17.36■□□□□ 0.37
VARS-228ENST00000495010 KIAA1683Q9H0B3 1180 aa17.36■□□□□ 0.37
VARS-228ENST00000495010 CCDC8Q9H0W5 538 aaPredicted RBP17.36■□□□□ 0.37
VARS-228ENST00000495010 FLRT1Q9NZU1 646 aa17.36■□□□□ 0.37
VARS-228ENST00000495010 MAP3K12Q12852 859 aa17.35■□□□□ 0.37
VARS-228ENST00000495010 DPP9Q86TI2 863 aa17.35■□□□□ 0.37
VARS-228ENST00000495010 RPAP3Q9H6T3 665 aaPredicted RBP17.35■□□□□ 0.37
VARS-228ENST00000495010 DBNLQ9UJU6 430 aaKnown RBP17.35■□□□□ 0.37
VARS-228ENST00000495010 MYH1P12882 1939 aa17.35■□□□□ 0.37
VARS-228ENST00000495010 DNM1LO00429 736 aa17.34■□□□□ 0.37
VARS-228ENST00000495010 POLR3DP05423 398 aaPredicted RBP17.34■□□□□ 0.37
VARS-228ENST00000495010 CYP2C19P33261 490 aa17.34■□□□□ 0.37
VARS-228ENST00000495010 GRB14Q14449 540 aa17.34■□□□□ 0.37
VARS-228ENST00000495010 LBX2Q6XYB7 198 aa17.34■□□□□ 0.37
VARS-228ENST00000495010 ACER1Q8TDN7 264 aa17.34■□□□□ 0.37
VARS-228ENST00000495010 BTBD7Q9P203 1132 aa17.34■□□□□ 0.37
VARS-228ENST00000495010 MYO5AQ9Y4I1 1855 aaKnown RBP17.33■□□□□ 0.37
VARS-228ENST00000495010 MPHOSPH10O00566 681 aaKnown RBP17.33■□□□□ 0.36
VARS-228ENST00000495010 HOXC6P09630 235 aa17.33■□□□□ 0.36
VARS-228ENST00000495010 FAM109BQ6ICB4 259 aaPredicted RBP17.33■□□□□ 0.36
VARS-228ENST00000495010 TMED8Q6PL24 325 aaPredicted RBP17.33■□□□□ 0.36
VARS-228ENST00000495010 ARRDC4Q8NCT1 418 aa17.33■□□□□ 0.36
VARS-228ENST00000495010 NPLOC4Q8TAT6 608 aa17.33■□□□□ 0.36
VARS-228ENST00000495010 C1orf115Q9H7X2 142 aa17.33■□□□□ 0.36
VARS-228ENST00000495010 TLR7Q9NYK1 1049 aaKnown RBP17.33■□□□□ 0.36
VARS-228ENST00000495010 ATP11BQ9Y2G3 1177 aa17.33■□□□□ 0.36
VARS-228ENST00000495010 LAMA3Q16787 3333 aa17.32■□□□□ 0.36
VARS-228ENST00000495010 SPDYE16A6NNV3 312 aaPredicted RBP17.32■□□□□ 0.36
VARS-228ENST00000495010 KBTBD13C9JR72 458 aa17.32■□□□□ 0.36
VARS-228ENST00000495010 MYCNP04198 464 aaPredicted RBP17.32■□□□□ 0.36
VARS-228ENST00000495010 RTP1P59025 263 aa17.32■□□□□ 0.36
VARS-228ENST00000495010 GJC2Q5T442 439 aaPredicted RBP17.32■□□□□ 0.36
VARS-228ENST00000495010 ZNF697Q5TEC3 545 aa17.32■□□□□ 0.36
VARS-228ENST00000495010 FTSJ3Q8IY81 847 aaKnown RBP17.32■□□□□ 0.36
VARS-228ENST00000495010 FAM161BQ96MY7 647 aa17.32■□□□□ 0.36
VARS-228ENST00000495010 SLC5A4Q9NY91 659 aa17.32■□□□□ 0.36
VARS-228ENST00000495010 HOXC10Q9NYD6 342 aa17.32■□□□□ 0.36
VARS-228ENST00000495010 NOP58Q9Y2X3 529 aaKnown RBP17.32■□□□□ 0.36
VARS-228ENST00000495010 FRMPD3Q5JV73 1810 aa17.31■□□□□ 0.36
VARS-228ENST00000495010 POTEB2H3BUK9 544 aa17.31■□□□□ 0.36
VARS-228ENST00000495010 STRNO43815 780 aa17.31■□□□□ 0.36
VARS-228ENST00000495010 COG2Q14746 738 aa17.31■□□□□ 0.36
VARS-228ENST00000495010 PHF6Q8IWS0 365 aaKnown RBP eCLIP17.31■□□□□ 0.36
VARS-228ENST00000495010 EAF2Q96CJ1 260 aaPredicted RBP17.31■□□□□ 0.36
VARS-228ENST00000495010 TANGO6Q9C0B7 1094 aa17.31■□□□□ 0.36
VARS-228ENST00000495010 MAGEB6P1A0A0J9YX57 407 aa17.3■□□□□ 0.36
VARS-228ENST00000495010 CYBAP13498 195 aa17.3■□□□□ 0.36
VARS-228ENST00000495010 ADORA2AP29274 412 aa17.3■□□□□ 0.36
VARS-228ENST00000495010 SHMT1P34896 483 aa17.3■□□□□ 0.36
VARS-228ENST00000495010 PLCD1P51178 756 aa17.3■□□□□ 0.36
VARS-228ENST00000495010 SEPT2Q15019 361 aa17.3■□□□□ 0.36
VARS-228ENST00000495010 ITPRIPQ8IWB1 547 aa17.3■□□□□ 0.36
VARS-228ENST00000495010 ANTXR1Q9H6X2 564 aa17.3■□□□□ 0.36
VARS-228ENST00000495010 PRDM5Q9NQX1 630 aaPredicted RBP17.3■□□□□ 0.36
VARS-228ENST00000495010 PLS1Q14651 629 aa17.29■□□□□ 0.36
VARS-228ENST00000495010 OLFML2BQ68BL8 750 aa17.29■□□□□ 0.36
VARS-228ENST00000495010 SLC39A5Q6ZMH5 540 aa17.29■□□□□ 0.36
VARS-228ENST00000495010 AACSQ86V21 672 aa17.29■□□□□ 0.36
VARS-228ENST00000495010 ERC1Q8IUD2 1116 aa17.29■□□□□ 0.36
VARS-228ENST00000495010 TRPV1Q8NER1 839 aa17.29■□□□□ 0.36
VARS-228ENST00000495010 GUCD1Q96NT3 240 aa17.29■□□□□ 0.36
VARS-228ENST00000495010 MOV10L1Q9BXT6 1211 aaKnown RBP17.29■□□□□ 0.36
Retrieved 100 of 20,778 RNA–protein pairs in 70.2 ms