RNA–Protein interactions for RNA: ENST00000493379.1

VPS52-219, Transcript of VPS52, GARP complex subunit, humanhuman

TSL 5

Gene VPS52, Length 786 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS52-219ENST00000493379 CFHR5Q9BXR6 569 aa8.24□□□□□ -1.09
VPS52-219ENST00000493379 ALG2Q9H553 416 aa8.24□□□□□ -1.09
VPS52-219ENST00000493379 EFCC1Q9HA90 598 aa8.24□□□□□ -1.09
VPS52-219ENST00000493379 HMG20BQ9P0W2 317 aa8.24□□□□□ -1.09
VPS52-219ENST00000493379 PSME4Q14997 1843 aa8.24□□□□□ -1.09
VPS52-219ENST00000493379 CDH23Q9H251 3354 aa8.23□□□□□ -1.09
VPS52-219ENST00000493379 UBE2Q2LH0YL09 131 aa8.23□□□□□ -1.09
VPS52-219ENST00000493379 WNT10BO00744 389 aa8.23□□□□□ -1.09
VPS52-219ENST00000493379 MCAMP43121 646 aa8.23□□□□□ -1.09
VPS52-219ENST00000493379 TBC1D10BQ4KMP7 808 aaPredicted RBP8.23□□□□□ -1.09
VPS52-219ENST00000493379 CCDC158Q5M9N0 1113 aa8.23□□□□□ -1.09
VPS52-219ENST00000493379 LCE2DQ5TA82 110 aaPredicted RBP8.23□□□□□ -1.09
VPS52-219ENST00000493379 BRICD5Q6PL45 260 aa8.23□□□□□ -1.09
VPS52-219ENST00000493379 LYPD8Q6UX82 237 aa8.23□□□□□ -1.09
VPS52-219ENST00000493379 UBE2Q1Q7Z7E8 422 aa8.23□□□□□ -1.09
VPS52-219ENST00000493379 OGFOD1Q8N543 542 aa8.23□□□□□ -1.09
VPS52-219ENST00000493379 ZGPATQ8N5A5 531 aaKnown RBP8.23□□□□□ -1.09
VPS52-219ENST00000493379 NEUROD6Q96NK8 337 aa8.23□□□□□ -1.09
VPS52-219ENST00000493379 P2RX7Q99572 595 aaKnown RBP8.23□□□□□ -1.09
VPS52-219ENST00000493379 USB1Q9BQ65 265 aaKnown RBP8.23□□□□□ -1.09
VPS52-219ENST00000493379 HTATIP2Q9BUP3 242 aa8.23□□□□□ -1.09
VPS52-219ENST00000493379 TRAIPQ9BWF2 469 aa8.23□□□□□ -1.09
VPS52-219ENST00000493379 LRRCC1Q9C099 1032 aa8.23□□□□□ -1.09
VPS52-219ENST00000493379 RWDD1Q9H446 243 aaPredicted RBP8.23□□□□□ -1.09
VPS52-219ENST00000493379 MYOZ2Q9NPC6 264 aa8.23□□□□□ -1.09
VPS52-219ENST00000493379 ASTN2O75129 1339 aaPredicted RBP8.23□□□□□ -1.09
VPS52-219ENST00000493379 SALL3Q9BXA9 1300 aa8.23□□□□□ -1.09
VPS52-219ENST00000493379 SPEF2Q9C093 1822 aa8.22□□□□□ -1.09
VPS52-219ENST00000493379 COL1A1P02452 1464 aaPredicted RBP8.22□□□□□ -1.09
VPS52-219ENST00000493379 GOLGA8CPA6NN73 597 aa8.22□□□□□ -1.09
VPS52-219ENST00000493379 IGHDP01880 384 aa8.22□□□□□ -1.09
VPS52-219ENST00000493379 ATP5JP18859 108 aa8.22□□□□□ -1.09
VPS52-219ENST00000493379 OS9Q13438 667 aaPredicted RBP8.22□□□□□ -1.09
VPS52-219ENST00000493379 SCARF1Q14162 830 aa8.22□□□□□ -1.09
VPS52-219ENST00000493379 MTFR1Q15390 333 aa8.22□□□□□ -1.09
VPS52-219ENST00000493379 GRIK5Q16478 980 aa8.22□□□□□ -1.09
VPS52-219ENST00000493379 KIF4BQ2VIQ3 1234 aa8.22□□□□□ -1.09
VPS52-219ENST00000493379 TJAP1Q5JTD0 557 aa8.22□□□□□ -1.09
VPS52-219ENST00000493379 SCUBE3Q8IX30 993 aa8.22□□□□□ -1.09
VPS52-219ENST00000493379 SPATA5Q8NB90 893 aa8.22□□□□□ -1.09
VPS52-219ENST00000493379 CDCA5Q96FF9 252 aa8.22□□□□□ -1.09
VPS52-219ENST00000493379 ZDHHC15Q96MV8 337 aa8.22□□□□□ -1.09
VPS52-219ENST00000493379 CCDC8Q9H0W5 538 aaPredicted RBP8.22□□□□□ -1.09
VPS52-219ENST00000493379 TLR7Q9NYK1 1049 aaKnown RBP8.22□□□□□ -1.09
VPS52-219ENST00000493379 TSR3Q9UJK0 312 aaKnown RBP8.22□□□□□ -1.09
VPS52-219ENST00000493379 BAHCC1Q9P281 2608 aa8.22□□□□□ -1.09
VPS52-219ENST00000493379 ZSWIM8A7E2V4 1837 aa8.22□□□□□ -1.09
VPS52-219ENST00000493379 MAP4K4O95819 1239 aaPredicted RBP8.21□□□□□ -1.1
VPS52-219ENST00000493379 CYP2E1P05181 493 aaPredicted RBP8.21□□□□□ -1.1
VPS52-219ENST00000493379 MRE11P49959 708 aa8.21□□□□□ -1.1
VPS52-219ENST00000493379 FKBP1CQ5VVH2 108 aa8.21□□□□□ -1.1
VPS52-219ENST00000493379 SPTY2D1Q68D10 685 aaPredicted RBP8.21□□□□□ -1.1
VPS52-219ENST00000493379 APOBEC3HQ6NTF7 200 aaKnown RBP8.21□□□□□ -1.1
VPS52-219ENST00000493379 AACSQ86V21 672 aa8.21□□□□□ -1.1
VPS52-219ENST00000493379 TICAM2Q86XR7 235 aa8.21□□□□□ -1.1
VPS52-219ENST00000493379 KIAA0825Q8IV33 1275 aa8.21□□□□□ -1.1
VPS52-219ENST00000493379 RETREG2Q8NC44 543 aa8.21□□□□□ -1.1
VPS52-219ENST00000493379 ZNF384Q8TF68 577 aa8.21□□□□□ -1.1
VPS52-219ENST00000493379 THAP11Q96EK4 314 aa8.21□□□□□ -1.1
VPS52-219ENST00000493379 ERO1AQ96HE7 468 aa8.21□□□□□ -1.1
VPS52-219ENST00000493379 PRMT6Q96LA8 375 aaPredicted RBP8.21□□□□□ -1.1
VPS52-219ENST00000493379 CDX2Q99626 313 aaPredicted RBP8.21□□□□□ -1.1
VPS52-219ENST00000493379 IL1RAPL2Q9NP60 686 aa8.21□□□□□ -1.1
VPS52-219ENST00000493379 IQSEC3Q9UPP2 1182 aaPredicted RBP8.21□□□□□ -1.1
VPS52-219ENST00000493379 HCN4Q9Y3Q4 1203 aa8.21□□□□□ -1.1
VPS52-219ENST00000493379 GAKO14976 1311 aa8.21□□□□□ -1.1
VPS52-219ENST00000493379 MAST3O60307 1309 aa8.21□□□□□ -1.1
VPS52-219ENST00000493379 ARAP2Q8WZ64 1704 aa8.2□□□□□ -1.1
VPS52-219ENST00000493379 GPR75-ASB3A0A0A6YYF3 556 aa8.2□□□□□ -1.1
VPS52-219ENST00000493379 FRAT2O75474 233 aaPredicted RBP8.2□□□□□ -1.1
VPS52-219ENST00000493379 LDHBP07195 334 aaKnown RBP8.2□□□□□ -1.1
VPS52-219ENST00000493379 PRDX5P30044 214 aa8.2□□□□□ -1.1
VPS52-219ENST00000493379 BMP8BP34820 402 aa8.2□□□□□ -1.1
VPS52-219ENST00000493379 SOX11P35716 441 aa8.2□□□□□ -1.1
VPS52-219ENST00000493379 CRKP46108 304 aa8.2□□□□□ -1.1
VPS52-219ENST00000493379 NUCB1Q02818 461 aa8.2□□□□□ -1.1
VPS52-219ENST00000493379 DLGAP5Q15398 846 aa8.2□□□□□ -1.1
VPS52-219ENST00000493379 NBPF9Q3BBW0 867 aa8.2□□□□□ -1.1
VPS52-219ENST00000493379 CFAP100Q494V2 611 aa8.2□□□□□ -1.1
VPS52-219ENST00000493379 GORABQ5T7V8 394 aa8.2□□□□□ -1.1
VPS52-219ENST00000493379 ERICH6BQ5W0A0 696 aa8.2□□□□□ -1.1
VPS52-219ENST00000493379 NBPF11Q86T75 865 aa8.2□□□□□ -1.1
VPS52-219ENST00000493379 DCPSQ96C86 337 aaKnown RBP8.2□□□□□ -1.1
VPS52-219ENST00000493379 NSUN4Q96CB9 384 aaKnown RBP8.2□□□□□ -1.1
VPS52-219ENST00000493379 HAUS7Q99871 368 aa8.2□□□□□ -1.1
VPS52-219ENST00000493379 OSBPL3Q9H4L5 887 aa8.2□□□□□ -1.1
VPS52-219ENST00000493379 ZMYND8Q9ULU4 1186 aaPredicted RBP8.2□□□□□ -1.1
VPS52-219ENST00000493379 TTF2Q9UNY4 1162 aaKnown RBP8.2□□□□□ -1.1
VPS52-219ENST00000493379 SCAF8Q9UPN6 1271 aaKnown RBP8.2□□□□□ -1.1
VPS52-219ENST00000493379 PCDHB3Q9Y5E6 796 aa8.2□□□□□ -1.1
VPS52-219ENST00000493379 NR1I2O75469 434 aa8.19□□□□□ -1.1
VPS52-219ENST00000493379 FMNL1O95466 1100 aaPredicted RBP8.19□□□□□ -1.1
VPS52-219ENST00000493379 IFIT2P09913 472 aaKnown RBP8.19□□□□□ -1.1
VPS52-219ENST00000493379 ZAP70P43403 619 aa8.19□□□□□ -1.1
VPS52-219ENST00000493379 CHAF1AQ13111 956 aaPredicted RBP8.19□□□□□ -1.1
VPS52-219ENST00000493379 TTC39AQ5SRH9 613 aa8.19□□□□□ -1.1
VPS52-219ENST00000493379 PI16Q6UXB8 463 aa8.19□□□□□ -1.1
VPS52-219ENST00000493379 TDHQ8IZJ6 230 aa8.19□□□□□ -1.1
VPS52-219ENST00000493379 MYLIPQ8WY64 445 aa8.19□□□□□ -1.1
VPS52-219ENST00000493379 WNT2BQ93097 391 aa8.19□□□□□ -1.1
Retrieved 100 of 20,778 RNA–protein pairs in 58.1 ms