RNA–Protein interactions for RNA: ENST00000469550.6

HDAC3-205, Transcript of histone deacetylase 3, humanhuman

TSL 1 (best)

Gene HDAC3, Length 1,952 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC3-205ENST00000469550 SDF4Q9BRK5 362 aa11.03□□□□□ -0.64
HDAC3-205ENST00000469550 XPO4Q9C0E2 1151 aaKnown RBP11.03□□□□□ -0.64
HDAC3-205ENST00000469550 MCOLN1Q9GZU1 580 aa11.03□□□□□ -0.64
HDAC3-205ENST00000469550 BICC1Q9H694 974 aaKnown RBP11.03□□□□□ -0.64
HDAC3-205ENST00000469550 GREM2Q9H772 168 aa11.03□□□□□ -0.64
HDAC3-205ENST00000469550 ORC3Q9UBD5 711 aaPredicted RBP11.03□□□□□ -0.64
HDAC3-205ENST00000469550 MINPP1Q9UNW1 487 aa11.03□□□□□ -0.64
HDAC3-205ENST00000469550 PTPDC1A2A3K4 754 aa11.02□□□□□ -0.65
HDAC3-205ENST00000469550 EFCAB8A8MWE9 144 aa11.02□□□□□ -0.65
HDAC3-205ENST00000469550 IKBKBO14920 756 aa11.02□□□□□ -0.65
HDAC3-205ENST00000469550 CASP7P55210 303 aa11.02□□□□□ -0.65
HDAC3-205ENST00000469550 EXOSC10Q01780 885 aaKnown RBP11.02□□□□□ -0.65
HDAC3-205ENST00000469550 CEBPZQ03701 1054 aaKnown RBP11.02□□□□□ -0.65
HDAC3-205ENST00000469550 SCARF1Q14162 830 aa11.02□□□□□ -0.65
HDAC3-205ENST00000469550 CWF19L2Q2TBE0 894 aaKnown RBP11.02□□□□□ -0.65
HDAC3-205ENST00000469550 ANGEL2Q5VTE6 544 aaKnown RBP11.02□□□□□ -0.65
HDAC3-205ENST00000469550 FBXL16Q8N461 479 aa11.02□□□□□ -0.65
HDAC3-205ENST00000469550 ZNF274Q96GC6 653 aaPredicted RBP11.02□□□□□ -0.65
HDAC3-205ENST00000469550 CCDC85AQ96PX6 553 aaPredicted RBP11.02□□□□□ -0.65
HDAC3-205ENST00000469550 MYOZ2Q9NPC6 264 aa11.02□□□□□ -0.65
HDAC3-205ENST00000469550 COPRSQ9NQ92 184 aa11.02□□□□□ -0.65
HDAC3-205ENST00000469550 PCDHA7Q9UN72 937 aa11.02□□□□□ -0.65
HDAC3-205ENST00000469550 LEMD3Q9Y2U8 911 aa11.02□□□□□ -0.65
HDAC3-205ENST00000469550 MYO1BO43795 1136 aa11.01□□□□□ -0.65
HDAC3-205ENST00000469550 YEATS4O95619 227 aa11.01□□□□□ -0.65
HDAC3-205ENST00000469550 CDK11BP21127 795 aaKnown RBP11.01□□□□□ -0.65
HDAC3-205ENST00000469550 ZNF157P51786 506 aaPredicted RBP11.01□□□□□ -0.65
HDAC3-205ENST00000469550 NLRP12P59046 1061 aa11.01□□□□□ -0.65
HDAC3-205ENST00000469550 KIF23Q02241 960 aaPredicted RBP11.01□□□□□ -0.65
HDAC3-205ENST00000469550 ZRSR1Q15695 479 aaKnown RBP11.01□□□□□ -0.65
HDAC3-205ENST00000469550 DACT2Q5SW24 774 aa11.01□□□□□ -0.65
HDAC3-205ENST00000469550 TMC6Q7Z403 805 aa11.01□□□□□ -0.65
HDAC3-205ENST00000469550 KCNG4Q8TDN1 519 aa11.01□□□□□ -0.65
HDAC3-205ENST00000469550 COA1Q9GZY4 146 aa11.01□□□□□ -0.65
HDAC3-205ENST00000469550 TMX1Q9H3N1 280 aa11.01□□□□□ -0.65
HDAC3-205ENST00000469550 ST7Q9NRC1 585 aa11.01□□□□□ -0.65
HDAC3-205ENST00000469550 IFNKQ9P0W0 207 aa11.01□□□□□ -0.65
HDAC3-205ENST00000469550 LAMB1P07942 1786 aa11.01□□□□□ -0.65
HDAC3-205ENST00000469550 ECM29Q5VYK3 1845 aa11.01□□□□□ -0.65
HDAC3-205ENST00000469550 CSF1RP07333 972 aa11.01□□□□□ -0.65
HDAC3-205ENST00000469550 GCKRQ14397 625 aa11.01□□□□□ -0.65
HDAC3-205ENST00000469550 NCAPHQ15003 741 aa11.01□□□□□ -0.65
HDAC3-205ENST00000469550 MUM1L1Q5H9M0 696 aa11.01□□□□□ -0.65
HDAC3-205ENST00000469550 CCDC158Q5M9N0 1113 aa11.01□□□□□ -0.65
HDAC3-205ENST00000469550 STRIP1Q5VSL9 837 aa11.01□□□□□ -0.65
HDAC3-205ENST00000469550 RASAL3Q86YV0 1011 aa11.01□□□□□ -0.65
HDAC3-205ENST00000469550 TXLNBQ8N3L3 684 aa11.01□□□□□ -0.65
HDAC3-205ENST00000469550 FTOQ9C0B1 505 aaKnown RBP eCLIP11.01□□□□□ -0.65
HDAC3-205ENST00000469550 DNAI1Q9UI46 699 aa11.01□□□□□ -0.65
HDAC3-205ENST00000469550 ERICH4A6NGS2 130 aa11□□□□□ -0.65
HDAC3-205ENST00000469550 TADA3O75528 432 aa11□□□□□ -0.65
HDAC3-205ENST00000469550 SMC2O95347 1197 aa11□□□□□ -0.65
HDAC3-205ENST00000469550 HNRNPH2P55795 449 aaKnown RBP11□□□□□ -0.65
HDAC3-205ENST00000469550 EVCP57679 992 aa11□□□□□ -0.65
HDAC3-205ENST00000469550 LRRFIP1Q32MZ4 808 aaKnown RBP11□□□□□ -0.65
HDAC3-205ENST00000469550 DPCR1Q3MIW9 517 aa11□□□□□ -0.65
HDAC3-205ENST00000469550 TRIM65Q6PJ69 517 aa11□□□□□ -0.65
HDAC3-205ENST00000469550 UBE3BQ7Z3V4 1068 aa11□□□□□ -0.65
HDAC3-205ENST00000469550 LINC00301Q8NCQ3 95 aa11□□□□□ -0.65
HDAC3-205ENST00000469550 HAUS7Q99871 368 aa11□□□□□ -0.65
HDAC3-205ENST00000469550 DSCC1Q9BVC3 393 aa11□□□□□ -0.65
HDAC3-205ENST00000469550 ANKRD2Q9GZV1 360 aa11□□□□□ -0.65
HDAC3-205ENST00000469550 POLR3EQ9NVU0 708 aa11□□□□□ -0.65
HDAC3-205ENST00000469550 COL1A1P02452 1464 aaPredicted RBP11□□□□□ -0.65
HDAC3-205ENST00000469550 NEDD4P46934 1319 aa11□□□□□ -0.65
HDAC3-205ENST00000469550 CCDC85CA6NKD9 419 aa10.99□□□□□ -0.65
HDAC3-205ENST00000469550 CBFA2T2O43439 604 aa10.99□□□□□ -0.65
HDAC3-205ENST00000469550 IGHMBP2P38935 993 aaKnown RBP10.99□□□□□ -0.65
HDAC3-205ENST00000469550 DGKZQ13574 1117 aa10.99□□□□□ -0.65
HDAC3-205ENST00000469550 TNNI3KQ59H18 835 aa10.99□□□□□ -0.65
HDAC3-205ENST00000469550 STOX1Q6ZVD7 989 aa10.99□□□□□ -0.65
HDAC3-205ENST00000469550 HOMER1Q86YM7 354 aa10.99□□□□□ -0.65
HDAC3-205ENST00000469550 LRRN4CLQ8ND94 238 aa10.99□□□□□ -0.65
HDAC3-205ENST00000469550 RNF186Q9NXI6 227 aa10.99□□□□□ -0.65
HDAC3-205ENST00000469550 FPGT-TNNI3KV9GXZ4 949 aa10.99□□□□□ -0.65
HDAC3-205ENST00000469550 GOLGA6L9A6NEM1 432 aa10.99□□□□□ -0.65
HDAC3-205ENST00000469550 ZSCAN12O43309 604 aa10.99□□□□□ -0.65
HDAC3-205ENST00000469550 SLC3A2P08195 630 aaKnown RBP10.99□□□□□ -0.65
HDAC3-205ENST00000469550 NDUFA8P51970 172 aa10.99□□□□□ -0.65
HDAC3-205ENST00000469550 FANCCQ00597 558 aa10.99□□□□□ -0.65
HDAC3-205ENST00000469550 C15orf52Q6ZUT6 534 aaKnown RBP10.99□□□□□ -0.65
HDAC3-205ENST00000469550 MNS1Q8NEH6 495 aa10.99□□□□□ -0.65
HDAC3-205ENST00000469550 CSRNP1Q96S65 589 aa10.99□□□□□ -0.65
HDAC3-205ENST00000469550 MPHOSPH8Q99549 860 aa10.99□□□□□ -0.65
HDAC3-205ENST00000469550 HELLSQ9NRZ9 838 aa10.99□□□□□ -0.65
HDAC3-205ENST00000469550 DBNLQ9UJU6 430 aaKnown RBP10.99□□□□□ -0.65
HDAC3-205ENST00000469550 ZNF804BA4D1E1 1349 aa10.98□□□□□ -0.65
HDAC3-205ENST00000469550 IRS2Q9Y4H2 1338 aa10.98□□□□□ -0.65
HDAC3-205ENST00000469550 A0A087WWV3 80 aa10.98□□□□□ -0.65
HDAC3-205ENST00000469550 WTIPA6NIX2 430 aaPredicted RBP10.98□□□□□ -0.65
HDAC3-205ENST00000469550 ZBTB22O15209 634 aa10.98□□□□□ -0.65
HDAC3-205ENST00000469550 CAPN2P17655 700 aa10.98□□□□□ -0.65
HDAC3-205ENST00000469550 ITGA6P23229 1130 aa10.98□□□□□ -0.65
HDAC3-205ENST00000469550 PDIA3P30101 505 aaKnown RBP10.98□□□□□ -0.65
HDAC3-205ENST00000469550 MLLT1Q03111 559 aaPredicted RBP10.98□□□□□ -0.65
HDAC3-205ENST00000469550 GPS2Q13227 327 aa10.98□□□□□ -0.65
HDAC3-205ENST00000469550 BRAPQ7Z569 592 aa10.98□□□□□ -0.65
HDAC3-205ENST00000469550 GPR161Q8N6U8 529 aaKnown RBP10.98□□□□□ -0.65
HDAC3-205ENST00000469550 KBTBD3Q8NAB2 608 aa10.98□□□□□ -0.65
HDAC3-205ENST00000469550 ZBED3Q96IU2 234 aaPredicted RBP10.98□□□□□ -0.65
Retrieved 100 of 20,778 RNA–protein pairs in 23.7 ms