RNA–Protein interactions for RNA: ENST00000466017.1

VPS41-211, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 4

Gene VPS41, Length 591 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-211ENST00000466017 CNTNAP4Q9C0A0 1308 aa6.86□□□□□ -1.31
VPS41-211ENST00000466017 SBF2Q86WG5 1849 aa6.86□□□□□ -1.31
VPS41-211ENST00000466017 A6NHS1 94 aa6.86□□□□□ -1.31
VPS41-211ENST00000466017 FAM229AH3BQW9 127 aa6.86□□□□□ -1.31
VPS41-211ENST00000466017 M0R082 166 aa6.86□□□□□ -1.31
VPS41-211ENST00000466017 XYLBO75191 536 aa6.86□□□□□ -1.31
VPS41-211ENST00000466017 ZAP70P43403 619 aa6.86□□□□□ -1.31
VPS41-211ENST00000466017 PROSER3Q2NL68 480 aa6.86□□□□□ -1.31
VPS41-211ENST00000466017 CENPQQ7L2Z9 268 aaPredicted RBP6.86□□□□□ -1.31
VPS41-211ENST00000466017 ITPRIPQ8IWB1 547 aa6.86□□□□□ -1.31
VPS41-211ENST00000466017 ZNF417Q8TAU3 575 aa6.86□□□□□ -1.31
VPS41-211ENST00000466017 XAGE3Q8WTP9 111 aa6.86□□□□□ -1.31
VPS41-211ENST00000466017 NUDT8Q8WV74 236 aa6.86□□□□□ -1.31
VPS41-211ENST00000466017 CCDC136Q96JN2 1154 aa6.86□□□□□ -1.31
VPS41-211ENST00000466017 ZNF587Q96SQ5 575 aaPredicted RBP6.86□□□□□ -1.31
VPS41-211ENST00000466017 UBE2OQ9C0C9 1292 aaKnown RBP6.86□□□□□ -1.31
VPS41-211ENST00000466017 SRCIN1Q9C0H9 1055 aa6.86□□□□□ -1.31
VPS41-211ENST00000466017 RWDD1Q9H446 243 aaPredicted RBP6.86□□□□□ -1.31
VPS41-211ENST00000466017 SLC6A14Q9UN76 642 aa6.86□□□□□ -1.31
VPS41-211ENST00000466017 NHSQ6T4R5 1651 aa6.86□□□□□ -1.31
VPS41-211ENST00000466017 ADCY9O60503 1353 aa6.85□□□□□ -1.31
VPS41-211ENST00000466017 KDM2BQ8NHM5 1336 aa6.85□□□□□ -1.31
VPS41-211ENST00000466017 C5P01031 1676 aa6.85□□□□□ -1.31
VPS41-211ENST00000466017 A0A087WZG4 1122 aa6.85□□□□□ -1.31
VPS41-211ENST00000466017 F6X3S4 739 aa6.85□□□□□ -1.31
VPS41-211ENST00000466017 J3QW42 95 aa6.85□□□□□ -1.31
VPS41-211ENST00000466017 MMP20O60882 483 aa6.85□□□□□ -1.31
VPS41-211ENST00000466017 RPS6KA4O75676 772 aa6.85□□□□□ -1.31
VPS41-211ENST00000466017 MYL6BP14649 208 aa6.85□□□□□ -1.31
VPS41-211ENST00000466017 NEXNQ0ZGT2 675 aa6.85□□□□□ -1.31
VPS41-211ENST00000466017 TCIRG1Q13488 830 aa6.85□□□□□ -1.31
VPS41-211ENST00000466017 ECM1Q16610 540 aa6.85□□□□□ -1.31
VPS41-211ENST00000466017 HIF1AQ16665 826 aa6.85□□□□□ -1.31
VPS41-211ENST00000466017 HSP90AB3PQ58FF7 597 aa6.85□□□□□ -1.31
VPS41-211ENST00000466017 COL13A1Q5TAT6 717 aaPredicted RBP6.85□□□□□ -1.31
VPS41-211ENST00000466017 CLEC4GQ6UXB4 293 aa6.85□□□□□ -1.31
VPS41-211ENST00000466017 ISCA1Q9BUE6 129 aa6.85□□□□□ -1.31
VPS41-211ENST00000466017 USP44Q9H0E7 712 aa6.85□□□□□ -1.31
VPS41-211ENST00000466017 UTP3Q9NQZ2 479 aaKnown RBP eCLIP6.85□□□□□ -1.318e-7■■■■■ 54.7
VPS41-211ENST00000466017 CCDC87Q9NVE4 849 aa6.85□□□□□ -1.31
VPS41-211ENST00000466017 MKL2Q9ULH7 1088 aa6.85□□□□□ -1.31
VPS41-211ENST00000466017 MAP3K2Q9Y2U5 619 aa6.85□□□□□ -1.31
VPS41-211ENST00000466017 MAP3K15Q6ZN16 1313 aa6.84□□□□□ -1.31
VPS41-211ENST00000466017 EGFRP00533 1210 aa6.84□□□□□ -1.31
VPS41-211ENST00000466017 ANXA1P04083 346 aa6.84□□□□□ -1.31
VPS41-211ENST00000466017 GNAI2P04899 355 aa6.84□□□□□ -1.31
VPS41-211ENST00000466017 IGKV5-2P06315 115 aa6.84□□□□□ -1.31
VPS41-211ENST00000466017 MPSTP25325 297 aa6.84□□□□□ -1.31
VPS41-211ENST00000466017 CRKLP46109 303 aaKnown RBP6.84□□□□□ -1.31
VPS41-211ENST00000466017 ATP8B2P98198 1209 aa6.84□□□□□ -1.31
VPS41-211ENST00000466017 MTX1Q13505 466 aa6.84□□□□□ -1.31
VPS41-211ENST00000466017 ITPK1Q13572 414 aa6.84□□□□□ -1.31
VPS41-211ENST00000466017 B4GALNT3Q6L9W6 998 aa6.84□□□□□ -1.31
VPS41-211ENST00000466017 SLC4A10Q6U841 1118 aa6.84□□□□□ -1.31
VPS41-211ENST00000466017 ADAMTSL4Q6UY14 1074 aa6.84□□□□□ -1.31
VPS41-211ENST00000466017 DHX32Q7L7V1 743 aaKnown RBP6.84□□□□□ -1.31
VPS41-211ENST00000466017 SMC5Q8IY18 1101 aa6.84□□□□□ -1.31
VPS41-211ENST00000466017 CCDC191Q8NCU4 936 aa6.84□□□□□ -1.31
VPS41-211ENST00000466017 PLVAPQ9BX97 442 aa6.84□□□□□ -1.31
VPS41-211ENST00000466017 RREB1Q92766 1687 aa6.84□□□□□ -1.32
VPS41-211ENST00000466017 BRWD3Q6RI45 1802 aa6.83□□□□□ -1.32
VPS41-211ENST00000466017 N4BP2Q86UW6 1770 aaPredicted RBP6.83□□□□□ -1.32
VPS41-211ENST00000466017 CYP2E1P05181 493 aaPredicted RBP6.83□□□□□ -1.32
VPS41-211ENST00000466017 RARAP10276 462 aa6.83□□□□□ -1.32
VPS41-211ENST00000466017 NID1P14543 1247 aa6.83□□□□□ -1.32
VPS41-211ENST00000466017 CPB1P15086 417 aa6.83□□□□□ -1.32
VPS41-211ENST00000466017 AIMP1Q12904 312 aaKnown RBP6.83□□□□□ -1.32
VPS41-211ENST00000466017 ZNF211Q13398 564 aaPredicted RBP6.83□□□□□ -1.32
VPS41-211ENST00000466017 GCKRQ14397 625 aa6.83□□□□□ -1.32
VPS41-211ENST00000466017 GRIK5Q16478 980 aa6.83□□□□□ -1.32
VPS41-211ENST00000466017 PLA2G4EQ3MJ16 856 aa6.83□□□□□ -1.32
VPS41-211ENST00000466017 TTLL7Q6ZT98 887 aa6.83□□□□□ -1.32
VPS41-211ENST00000466017 ILDR2Q71H61 639 aa6.83□□□□□ -1.32
VPS41-211ENST00000466017 PTF1AQ7RTS3 328 aa6.83□□□□□ -1.32
VPS41-211ENST00000466017 NPM2Q86SE8 214 aaKnown RBP6.83□□□□□ -1.32
VPS41-211ENST00000466017 ANKRD44Q8N8A2 993 aa6.83□□□□□ -1.32
VPS41-211ENST00000466017 GCC1Q96CN9 775 aa6.83□□□□□ -1.32
VPS41-211ENST00000466017 PNMA5Q96PV4 448 aa6.83□□□□□ -1.32
VPS41-211ENST00000466017 ZBTB1Q9Y2K1 713 aa6.83□□□□□ -1.32
VPS41-211ENST00000466017 LY75O60449 1722 aa6.83□□□□□ -1.32
VPS41-211ENST00000466017 BTAF1O14981 1849 aa6.83□□□□□ -1.32
VPS41-211ENST00000466017 TJP1Q07157 1748 aa6.82□□□□□ -1.32
VPS41-211ENST00000466017 GRM8O00222 908 aa6.82□□□□□ -1.32
VPS41-211ENST00000466017 TRIM37O94972 964 aa6.82□□□□□ -1.32
VPS41-211ENST00000466017 IGHDP01880 384 aa6.82□□□□□ -1.32
VPS41-211ENST00000466017 UBTFL1P0CB47 393 aaPredicted RBP6.82□□□□□ -1.32
VPS41-211ENST00000466017 ALAS2P22557 587 aa6.82□□□□□ -1.32
VPS41-211ENST00000466017 SERPINB4P48594 390 aa6.82□□□□□ -1.32
VPS41-211ENST00000466017 CASP7P55210 303 aa6.82□□□□□ -1.32
VPS41-211ENST00000466017 PERM1Q5SV97 790 aa6.82□□□□□ -1.32
VPS41-211ENST00000466017 PSAPL1Q6NUJ1 521 aa6.82□□□□□ -1.32
VPS41-211ENST00000466017 KANK3Q6NY19 840 aa6.82□□□□□ -1.32
VPS41-211ENST00000466017 CEP85Q6P2H3 762 aa6.82□□□□□ -1.32
VPS41-211ENST00000466017 KIF6Q6ZMV9 814 aa6.82□□□□□ -1.32
VPS41-211ENST00000466017 SIRT2Q8IXJ6 389 aa6.82□□□□□ -1.32
VPS41-211ENST00000466017 ZNF34Q8IZ26 560 aa6.82□□□□□ -1.32
VPS41-211ENST00000466017 LINC00116Q8NCU8 138 aa6.82□□□□□ -1.32
VPS41-211ENST00000466017 HELQQ8TDG4 1101 aa6.82□□□□□ -1.32
VPS41-211ENST00000466017 MEIS3Q99687 375 aa6.82□□□□□ -1.32
VPS41-211ENST00000466017 MYD88Q99836 296 aa6.82□□□□□ -1.32
Retrieved 100 of 20,778 RNA–protein pairs in 35.7 ms