RNA–Protein interactions for RNA: ENST00000459947.5

UBR4-208, Transcript of ubiquitin protein ligase E3 component n-recognin 4, humanhuman

TSL 2

Gene UBR4, Length 3,873 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UBR4-208ENST00000459947 STAG1Q8WVM7 1258 aa12.67□□□□□ -0.38
UBR4-208ENST00000459947 ERO1AQ96HE7 468 aa12.67□□□□□ -0.38
UBR4-208ENST00000459947 DDX52Q9Y2R4 599 aaKnown RBP eCLIP12.67□□□□□ -0.38
UBR4-208ENST00000459947 MKRN3Q13064 507 aaKnown RBP12.67□□□□□ -0.38
UBR4-208ENST00000459947 RNF20Q5VTR2 975 aa12.67□□□□□ -0.38
UBR4-208ENST00000459947 MFSD6Q6ZSS7 791 aa12.67□□□□□ -0.38
UBR4-208ENST00000459947 MYPNQ86TC9 1320 aa12.67□□□□□ -0.38
UBR4-208ENST00000459947 TSPY3P0CV98 308 aa12.67□□□□□ -0.38
UBR4-208ENST00000459947 TSPY8P0CW00 308 aa12.67□□□□□ -0.38
UBR4-208ENST00000459947 RASA1P20936 1047 aa12.67□□□□□ -0.38
UBR4-208ENST00000459947 KIF22Q14807 665 aa12.67□□□□□ -0.38
UBR4-208ENST00000459947 RAB3GAP1Q15042 981 aa12.67□□□□□ -0.38
UBR4-208ENST00000459947 AKNAD1Q5T1N1 836 aa12.67□□□□□ -0.38
UBR4-208ENST00000459947 ESR2Q92731 530 aa12.67□□□□□ -0.38
UBR4-208ENST00000459947 DYNLL2Q96FJ2 89 aa12.67□□□□□ -0.38
UBR4-208ENST00000459947 ZBTB4Q9P1Z0 1013 aaPredicted RBP12.67□□□□□ -0.38
UBR4-208ENST00000459947 TRDNQ13061 729 aa12.66□□□□□ -0.38
UBR4-208ENST00000459947 ZNF589Q86UQ0 364 aaPredicted RBP12.66□□□□□ -0.38
UBR4-208ENST00000459947 ESYT1Q9BSJ8 1104 aa12.66□□□□□ -0.38
UBR4-208ENST00000459947 GREB1LQ9C091 1923 aaPredicted RBP12.66□□□□□ -0.38
UBR4-208ENST00000459947 PTPRFP10586 1907 aa12.66□□□□□ -0.38
UBR4-208ENST00000459947 TRIM75PA6NK02 468 aa12.66□□□□□ -0.38
UBR4-208ENST00000459947 FKTNO75072 461 aa12.66□□□□□ -0.38
UBR4-208ENST00000459947 GNRH1P01148 92 aa12.66□□□□□ -0.38
UBR4-208ENST00000459947 HOXA7P31268 230 aaPredicted RBP12.66□□□□□ -0.38
UBR4-208ENST00000459947 TCP11L1Q9NUJ3 509 aa12.66□□□□□ -0.38
UBR4-208ENST00000459947 USP17L15C9J2P7 530 aa12.66□□□□□ -0.38
UBR4-208ENST00000459947 BTBD19C9JJ37 291 aa12.66□□□□□ -0.38
UBR4-208ENST00000459947 USP17L13C9JLJ4 530 aa12.66□□□□□ -0.38
UBR4-208ENST00000459947 USP17L11C9JVI0 530 aa12.66□□□□□ -0.38
UBR4-208ENST00000459947 USP17L18D6R9N7 530 aa12.66□□□□□ -0.38
UBR4-208ENST00000459947 USP17L22D6RA61 530 aa12.66□□□□□ -0.38
UBR4-208ENST00000459947 USP17L17D6RBQ6 530 aa12.66□□□□□ -0.38
UBR4-208ENST00000459947 USP17L19D6RCP7 530 aa12.66□□□□□ -0.38
UBR4-208ENST00000459947 USP17L20D6RJB6 530 aa12.66□□□□□ -0.38
UBR4-208ENST00000459947 REC8O95072 547 aa12.66□□□□□ -0.38
UBR4-208ENST00000459947 CHGBP05060 677 aa12.66□□□□□ -0.38
UBR4-208ENST00000459947 USP17L24Q0WX57 530 aa12.66□□□□□ -0.38
UBR4-208ENST00000459947 AKR1B1P15121 316 aa12.65□□□□□ -0.38
UBR4-208ENST00000459947 PRMT2P55345 433 aa12.65□□□□□ -0.38
UBR4-208ENST00000459947 IRX3P78415 501 aaPredicted RBP12.65□□□□□ -0.38
UBR4-208ENST00000459947 SEPT2Q15019 361 aa12.65□□□□□ -0.38
UBR4-208ENST00000459947 MTA3Q9BTC8 594 aa12.65□□□□□ -0.38
UBR4-208ENST00000459947 TMX2Q9Y320 296 aa12.65□□□□□ -0.38
UBR4-208ENST00000459947 TSPY2A6NKD2 308 aa12.65□□□□□ -0.38
UBR4-208ENST00000459947 WDR46O15213 610 aaKnown RBP12.65□□□□□ -0.38
UBR4-208ENST00000459947 TRPA1O75762 1119 aa12.65□□□□□ -0.38
UBR4-208ENST00000459947 SLC4A8Q2Y0W8 1093 aa12.65□□□□□ -0.38
UBR4-208ENST00000459947 RCSD1Q6JBY9 416 aa12.65□□□□□ -0.38
UBR4-208ENST00000459947 PDHXO00330 501 aa12.65□□□□□ -0.38
UBR4-208ENST00000459947 IGF2BP3O00425 579 aaKnown RBP eCLIP12.65□□□□□ -0.38
UBR4-208ENST00000459947 FOXN1O15353 648 aa12.65□□□□□ -0.38
UBR4-208ENST00000459947 CNKSR2Q8WXI2 1034 aa12.65□□□□□ -0.38
UBR4-208ENST00000459947 CYP2D7A0A087X1C5 515 aa12.64□□□□□ -0.39
UBR4-208ENST00000459947 TTLL1O95922 423 aa12.64□□□□□ -0.39
UBR4-208ENST00000459947 MTMR2Q13614 643 aa12.64□□□□□ -0.39
UBR4-208ENST00000459947 RRP1BQ14684 758 aaKnown RBP12.64□□□□□ -0.39
UBR4-208ENST00000459947 PKN2Q16513 984 aaKnown RBP12.64□□□□□ -0.39
UBR4-208ENST00000459947 TTC14Q96N46 770 aa12.64□□□□□ -0.39
UBR4-208ENST00000459947 VCPKMTQ9H867 229 aa12.64□□□□□ -0.39
UBR4-208ENST00000459947 FDX1P10109 184 aa12.64□□□□□ -0.39
UBR4-208ENST00000459947 IQCA1Q86XH1 822 aa12.64□□□□□ -0.39
UBR4-208ENST00000459947 SLC44A5Q8NCS7 719 aa12.64□□□□□ -0.39
UBR4-208ENST00000459947 MKL1Q969V6 931 aa12.64□□□□□ -0.39
UBR4-208ENST00000459947 PNMA2Q9UL42 364 aa12.64□□□□□ -0.39
UBR4-208ENST00000459947 IGKV6D-41A0A0C4DH26 115 aa12.64□□□□□ -0.39
UBR4-208ENST00000459947 GPR25O00155 361 aa12.64□□□□□ -0.39
UBR4-208ENST00000459947 COPB2P35606 906 aa12.64□□□□□ -0.39
UBR4-208ENST00000459947 HMGCS2P54868 508 aa12.64□□□□□ -0.39
UBR4-208ENST00000459947 VPS53Q5VIR6 699 aa12.64□□□□□ -0.39
UBR4-208ENST00000459947 ZIC5Q96T25 663 aa12.64□□□□□ -0.39
UBR4-208ENST00000459947 TOMM22Q9NS69 142 aa12.64□□□□□ -0.39
UBR4-208ENST00000459947 TLR2O60603 784 aa12.63□□□□□ -0.39
UBR4-208ENST00000459947 GPAT2Q6NUI2 795 aa12.63□□□□□ -0.39
UBR4-208ENST00000459947 MB21D1Q8N884 522 aa12.63□□□□□ -0.39
UBR4-208ENST00000459947 FOXP2O15409 715 aa12.63□□□□□ -0.39
UBR4-208ENST00000459947 KRT32Q14532 448 aa12.63□□□□□ -0.39
UBR4-208ENST00000459947 RALYLQ86SE5 291 aaKnown RBP12.63□□□□□ -0.39
UBR4-208ENST00000459947 MAP4K1Q92918 833 aa12.63□□□□□ -0.39
UBR4-208ENST00000459947 GUCY1A2P33402 732 aa12.63□□□□□ -0.39
UBR4-208ENST00000459947 TFAP4Q01664 338 aa12.63□□□□□ -0.39
UBR4-208ENST00000459947 MOGSQ13724 837 aa12.63□□□□□ -0.39
UBR4-208ENST00000459947 SART3Q15020 963 aaKnown RBP12.63□□□□□ -0.39
UBR4-208ENST00000459947 SMCR8Q8TEV9 937 aaPredicted RBP12.63□□□□□ -0.39
UBR4-208ENST00000459947 RANBP6O60518 1105 aaKnown RBP12.63□□□□□ -0.39
UBR4-208ENST00000459947 MCCP23508 829 aa12.63□□□□□ -0.39
UBR4-208ENST00000459947 HOXD10P28358 340 aa12.63□□□□□ -0.39
UBR4-208ENST00000459947 FAM43AQ8N2R8 423 aa12.63□□□□□ -0.39
UBR4-208ENST00000459947 GMCL1P1Q8NEA9 526 aa12.63□□□□□ -0.39
UBR4-208ENST00000459947 CCNA1P78396 465 aa12.62□□□□□ -0.39
UBR4-208ENST00000459947 LBX2Q6XYB7 198 aa12.62□□□□□ -0.39
UBR4-208ENST00000459947 PTPN18Q99952 460 aa12.62□□□□□ -0.39
UBR4-208ENST00000459947 MTMR4Q9NYA4 1195 aa12.62□□□□□ -0.39
UBR4-208ENST00000459947 SP3Q02447 781 aa12.62□□□□□ -0.39
UBR4-208ENST00000459947 CTDSPL2Q05D32 466 aa12.62□□□□□ -0.39
UBR4-208ENST00000459947 CRHR2Q13324 411 aa12.62□□□□□ -0.39
UBR4-208ENST00000459947 HOXC10Q9NYD6 342 aa12.62□□□□□ -0.39
UBR4-208ENST00000459947 ADGRA2Q96PE1 1338 aa12.62□□□□□ -0.39
UBR4-208ENST00000459947 TOP1P11387 765 aaKnown RBP12.62□□□□□ -0.39
UBR4-208ENST00000459947 EEF2P13639 858 aaKnown RBP12.62□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 54.3 ms