RNA–Protein interactions for RNA: ENST00000454240.1

SMARCC1-203, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin subfamily c member 1, humanhuman

TSL 3

Gene SMARCC1, Length 636 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCC1-203ENST00000454240 CTCFP49711 727 aaPredicted RBP33.24■■■□□ 2.91
SMARCC1-203ENST00000454240 PTH1RQ03431 593 aa33.24■■■□□ 2.91
SMARCC1-203ENST00000454240 MTMR2Q13614 643 aa33.24■■■□□ 2.91
SMARCC1-203ENST00000454240 NBPF3Q9H094 633 aa33.24■■■□□ 2.91
SMARCC1-203ENST00000454240 INCENPQ9NQS7 918 aa33.24■■■□□ 2.91
SMARCC1-203ENST00000454240 CTNNA3Q9UI47 895 aa33.24■■■□□ 2.91
SMARCC1-203ENST00000454240 TSKSQ9UJT2 592 aa33.24■■■□□ 2.91
SMARCC1-203ENST00000454240 ZNF213O14771 459 aa33.23■■■□□ 2.91
SMARCC1-203ENST00000454240 HSPA8P11142 646 aaKnown RBP33.23■■■□□ 2.91
SMARCC1-203ENST00000454240 HMGCS2P54868 508 aa33.23■■■□□ 2.91
SMARCC1-203ENST00000454240 HAND2P61296 217 aa33.23■■■□□ 2.91
SMARCC1-203ENST00000454240 GADL1Q6ZQY3 521 aa33.23■■■□□ 2.91
SMARCC1-203ENST00000454240 SIAH1Q8IUQ4 282 aa33.23■■■□□ 2.91
SMARCC1-203ENST00000454240 PROCA1Q8NCQ7 364 aaPredicted RBP33.23■■■□□ 2.91
SMARCC1-203ENST00000454240 ACER1Q8TDN7 264 aa33.23■■■□□ 2.91
SMARCC1-203ENST00000454240 KANSL2Q9H9L4 492 aa33.22■■■□□ 2.91
SMARCC1-203ENST00000454240 ORC4O43929 436 aa33.21■■■□□ 2.91
SMARCC1-203ENST00000454240 TBC1D8O95759 1140 aa33.21■■■□□ 2.91
SMARCC1-203ENST00000454240 KIAA1683Q9H0B3 1180 aa33.21■■■□□ 2.91
SMARCC1-203ENST00000454240 A0A1W2PRG0 241 aa33.2■■■□□ 2.91
SMARCC1-203ENST00000454240 PDHXO00330 501 aa33.2■■■□□ 2.91
SMARCC1-203ENST00000454240 DGKZQ13574 1117 aa33.2■■■□□ 2.91
SMARCC1-203ENST00000454240 CASC1Q6TDU7 716 aa33.2■■■□□ 2.91
SMARCC1-203ENST00000454240 STAG1Q8WVM7 1258 aa33.2■■■□□ 2.91
SMARCC1-203ENST00000454240 MAP4K1Q92918 833 aa33.2■■■□□ 2.91
SMARCC1-203ENST00000454240 R3HDMLQ9H3Y0 253 aa33.2■■■□□ 2.91
SMARCC1-203ENST00000454240 AGTPBP1Q9UPW5 1226 aa33.2■■■□□ 2.91
SMARCC1-203ENST00000454240 IGKV6D-41A0A0C4DH26 115 aa33.19■■■□□ 2.9
SMARCC1-203ENST00000454240 PCP11498 1178 aaKnown RBP33.19■■■□□ 2.9
SMARCC1-203ENST00000454240 ICA1Q05084 483 aa33.19■■■□□ 2.9
SMARCC1-203ENST00000454240 IMMTQ16891 758 aaKnown RBP33.19■■■□□ 2.9
SMARCC1-203ENST00000454240 AKNAD1Q5T1N1 836 aa33.19■■■□□ 2.9
SMARCC1-203ENST00000454240 USP17L2Q6R6M4 530 aa33.19■■■□□ 2.9
SMARCC1-203ENST00000454240 CLEC10AQ8IUN9 316 aa33.19■■■□□ 2.9
SMARCC1-203ENST00000454240 TBC1D10CQ8IV04 446 aa33.19■■■□□ 2.9
SMARCC1-203ENST00000454240 NEDD1Q8NHV4 660 aa33.19■■■□□ 2.9
SMARCC1-203ENST00000454240 EMILIN3Q9NT22 766 aa33.19■■■□□ 2.9
SMARCC1-203ENST00000454240 SLC45A1Q9Y2W3 748 aa33.19■■■□□ 2.9
SMARCC1-203ENST00000454240 PLIN4Q96Q06 1357 aa33.19■■■□□ 2.9
SMARCC1-203ENST00000454240 TFAP4Q01664 338 aa33.18■■■□□ 2.9
SMARCC1-203ENST00000454240 CRHR2Q13324 411 aa33.18■■■□□ 2.9
SMARCC1-203ENST00000454240 TAF1CQ15572 869 aaPredicted RBP33.18■■■□□ 2.9
SMARCC1-203ENST00000454240 FAM47AQ5JRC9 791 aa33.18■■■□□ 2.9
SMARCC1-203ENST00000454240 TREML2Q5T2D2 321 aa33.18■■■□□ 2.9
SMARCC1-203ENST00000454240 C12orf42Q96LP6 360 aa33.18■■■□□ 2.9
SMARCC1-203ENST00000454240 FEZ1Q99689 392 aa33.18■■■□□ 2.9
SMARCC1-203ENST00000454240 TMOD4Q9NZQ9 345 aa33.18■■■□□ 2.9
SMARCC1-203ENST00000454240 TSPY3P0CV98 308 aa33.17■■■□□ 2.9
SMARCC1-203ENST00000454240 TSPY8P0CW00 308 aa33.17■■■□□ 2.9
SMARCC1-203ENST00000454240 LBX1P52954 281 aa33.17■■■□□ 2.9
SMARCC1-203ENST00000454240 USP14P54578 494 aa33.17■■■□□ 2.9
SMARCC1-203ENST00000454240 MFSD6Q6ZSS7 791 aa33.17■■■□□ 2.9
SMARCC1-203ENST00000454240 KIAA1211Q6ZU35 1233 aa33.17■■■□□ 2.9
SMARCC1-203ENST00000454240 LSG1Q9H089 658 aaKnown RBP33.17■■■□□ 2.9
SMARCC1-203ENST00000454240 ARHGEF10LQ9HCE6 1279 aa33.17■■■□□ 2.9
SMARCC1-203ENST00000454240 U3KPZ7 1027 aaPredicted RBP33.17■■■□□ 2.9
SMARCC1-203ENST00000454240 MYH4Q9Y623 1939 aa33.17■■■□□ 2.9
SMARCC1-203ENST00000454240 EEF2P13639 858 aaKnown RBP33.16■■■□□ 2.9
SMARCC1-203ENST00000454240 RNF41Q9H4P4 317 aaPredicted RBP33.16■■■□□ 2.9
SMARCC1-203ENST00000454240 ZFYVE28Q9HCC9 887 aa33.16■■■□□ 2.9
SMARCC1-203ENST00000454240 TMX2Q9Y320 296 aa33.16■■■□□ 2.9
SMARCC1-203ENST00000454240 ZYXQ15942 572 aaKnown RBP33.15■■■□□ 2.9
SMARCC1-203ENST00000454240 NOM1Q5C9Z4 860 aaKnown RBP33.15■■■□□ 2.9
SMARCC1-203ENST00000454240 TSPY2A6NKD2 308 aa33.14■■■□□ 2.9
SMARCC1-203ENST00000454240 RANBP6O60518 1105 aaKnown RBP33.14■■■□□ 2.9
SMARCC1-203ENST00000454240 NYAP2Q9P242 653 aa33.14■■■□□ 2.9
SMARCC1-203ENST00000454240 CASP8AP2Q9UKL3 1982 aa33.14■■■□□ 2.9
SMARCC1-203ENST00000454240 CEP95Q96GE4 821 aa33.13■■■□□ 2.89
SMARCC1-203ENST00000454240 SH2D4AQ9H788 454 aa33.13■■■□□ 2.89
SMARCC1-203ENST00000454240 TOMM22Q9NS69 142 aa33.13■■■□□ 2.89
SMARCC1-203ENST00000454240 MTMR4Q9NYA4 1195 aa33.13■■■□□ 2.89
SMARCC1-203ENST00000454240 HOXA7P31268 230 aaPredicted RBP33.12■■■□□ 2.89
SMARCC1-203ENST00000454240 PABPC4Q13310 644 aaKnown RBP eCLIP33.12■■■□□ 2.89
SMARCC1-203ENST00000454240 RRP12Q5JTH9 1297 aaKnown RBP33.12■■■□□ 2.89
SMARCC1-203ENST00000454240 PRDM10Q9NQV6 1147 aa33.12■■■□□ 2.89
SMARCC1-203ENST00000454240 RBM8AQ9Y5S9 174 aaKnown RBP33.12■■■□□ 2.89
SMARCC1-203ENST00000454240 NEDD4P46934 1319 aa33.11■■■□□ 2.89
SMARCC1-203ENST00000454240 GPR25O00155 361 aa33.11■■■□□ 2.89
SMARCC1-203ENST00000454240 TLR2O60603 784 aa33.11■■■□□ 2.89
SMARCC1-203ENST00000454240 CYP21A2P08686 494 aa33.11■■■□□ 2.89
SMARCC1-203ENST00000454240 PARK7Q99497 189 aaKnown RBP33.11■■■□□ 2.89
SMARCC1-203ENST00000454240 ANO2Q9NQ90 1003 aa33.11■■■□□ 2.89
SMARCC1-203ENST00000454240 CYP2C8P10632 490 aa33.1■■■□□ 2.89
SMARCC1-203ENST00000454240 NT5C2P49902 561 aa33.1■■■□□ 2.89
SMARCC1-203ENST00000454240 ATP2B2Q01814 1243 aa33.1■■■□□ 2.89
SMARCC1-203ENST00000454240 NKX2-3Q8TAU0 364 aa33.1■■■□□ 2.89
SMARCC1-203ENST00000454240 MKL1Q969V6 931 aa33.1■■■□□ 2.89
SMARCC1-203ENST00000454240 VCPKMTQ9H867 229 aa33.1■■■□□ 2.89
SMARCC1-203ENST00000454240 IL17RBQ9NRM6 502 aa33.1■■■□□ 2.89
SMARCC1-203ENST00000454240 ADGRA2Q96PE1 1338 aa33.09■■■□□ 2.89
SMARCC1-203ENST00000454240 VCAM1P19320 739 aa33.09■■■□□ 2.89
SMARCC1-203ENST00000454240 KIAA1755Q5JYT7 1200 aa33.09■■■□□ 2.89
SMARCC1-203ENST00000454240 CLIP2Q9UDT6 1046 aa33.09■■■□□ 2.89
SMARCC1-203ENST00000454240 PNMA3Q9UL41 463 aa33.09■■■□□ 2.89
SMARCC1-203ENST00000454240 TTLL1O95922 423 aa33.08■■■□□ 2.89
SMARCC1-203ENST00000454240 NOVP48745 357 aa33.08■■■□□ 2.89
SMARCC1-203ENST00000454240 LPAR1Q92633 364 aa33.08■■■□□ 2.89
SMARCC1-203ENST00000454240 ESR2Q92731 530 aa33.08■■■□□ 2.89
SMARCC1-203ENST00000454240 TCP11L1Q9NUJ3 509 aa33.08■■■□□ 2.89
SMARCC1-203ENST00000454240 OSBPP22059 807 aa33.07■■■□□ 2.88
Retrieved 100 of 20,778 RNA–protein pairs in 181.4 ms