RNA–Protein interactions for RNA: ENST00000438647.3

RAPGEF1-206, Transcript of Rap guanine nucleotide exchange factor 1, humanhuman

TSL 3

Gene RAPGEF1, Length 588 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RAPGEF1-206ENST00000438647 KIAA1683Q9H0B3 1180 aa29.59■■■□□ 2.33
RAPGEF1-206ENST00000438647 ASCC2Q9H1I8 757 aaPredicted RBP29.59■■■□□ 2.33
RAPGEF1-206ENST00000438647 TRIM6-TRIM34B2RNG4 842 aa29.58■■■□□ 2.33
RAPGEF1-206ENST00000438647 PSMC4P43686 418 aa29.58■■■□□ 2.33
RAPGEF1-206ENST00000438647 PRMT2P55345 433 aa29.58■■■□□ 2.33
RAPGEF1-206ENST00000438647 ARHGAP39Q9C0H5 1083 aa29.58■■■□□ 2.33
RAPGEF1-206ENST00000438647 EMILIN3Q9NT22 766 aa29.58■■■□□ 2.33
RAPGEF1-206ENST00000438647 FMNL1O95466 1100 aaPredicted RBP29.57■■■□□ 2.32
RAPGEF1-206ENST00000438647 HOXD10P28358 340 aa29.57■■■□□ 2.32
RAPGEF1-206ENST00000438647 GUCY1A2P33402 732 aa29.57■■■□□ 2.32
RAPGEF1-206ENST00000438647 EPB41L4AQ9HCS5 686 aaPredicted RBP29.57■■■□□ 2.32
RAPGEF1-206ENST00000438647 MYH8P13535 1937 aa29.57■■■□□ 2.32
RAPGEF1-206ENST00000438647 HTTP42858 3142 aa29.56■■■□□ 2.32
RAPGEF1-206ENST00000438647 MINDY4BA8MYZ0 360 aa29.56■■■□□ 2.32
RAPGEF1-206ENST00000438647 FCGRTP55899 365 aa29.56■■■□□ 2.32
RAPGEF1-206ENST00000438647 FAM110CQ1W6H9 321 aa29.56■■■□□ 2.32
RAPGEF1-206ENST00000438647 IFNL3Q8IZI9 196 aa29.56■■■□□ 2.32
RAPGEF1-206ENST00000438647 AKR1B1P15121 316 aa29.55■■■□□ 2.32
RAPGEF1-206ENST00000438647 ZYXQ15942 572 aaKnown RBP29.55■■■□□ 2.32
RAPGEF1-206ENST00000438647 ANKRD13CQ8N6S4 541 aa29.55■■■□□ 2.32
RAPGEF1-206ENST00000438647 ACER1Q8TDN7 264 aa29.55■■■□□ 2.32
RAPGEF1-206ENST00000438647 TRIM47Q96LD4 638 aa29.55■■■□□ 2.32
RAPGEF1-206ENST00000438647 ZNF287Q9HBT7 754 aa29.55■■■□□ 2.32
RAPGEF1-206ENST00000438647 HELLSQ9NRZ9 838 aa29.55■■■□□ 2.32
RAPGEF1-206ENST00000438647 ROBO3Q96MS0 1386 aa29.54■■■□□ 2.32
RAPGEF1-206ENST00000438647 SMIM22K7EJ46 135 aa29.54■■■□□ 2.32
RAPGEF1-206ENST00000438647 RILPL2Q969X0 211 aa29.54■■■□□ 2.32
RAPGEF1-206ENST00000438647 NAPBQ9H115 298 aa29.54■■■□□ 2.32
RAPGEF1-206ENST00000438647 GTF3C2Q8WUA4 911 aaPredicted RBP29.53■■■□□ 2.32
RAPGEF1-206ENST00000438647 SH2D4AQ9H788 454 aa29.53■■■□□ 2.32
RAPGEF1-206ENST00000438647 MKNK2Q9HBH9 465 aa29.53■■■□□ 2.32
RAPGEF1-206ENST00000438647 ARHGEF10LQ9HCE6 1279 aa29.53■■■□□ 2.32
RAPGEF1-206ENST00000438647 SRRDQ9UH36 339 aa29.53■■■□□ 2.32
RAPGEF1-206ENST00000438647 ECM2O94769 699 aaPredicted RBP29.52■■■□□ 2.32
RAPGEF1-206ENST00000438647 ICA1Q05084 483 aa29.52■■■□□ 2.32
RAPGEF1-206ENST00000438647 PTCH2Q9Y6C5 1203 aa29.52■■■□□ 2.32
RAPGEF1-206ENST00000438647 USP17L15C9J2P7 530 aa29.51■■■□□ 2.31
RAPGEF1-206ENST00000438647 USP17L13C9JLJ4 530 aa29.51■■■□□ 2.31
RAPGEF1-206ENST00000438647 USP17L11C9JVI0 530 aa29.51■■■□□ 2.31
RAPGEF1-206ENST00000438647 USP17L18D6R9N7 530 aa29.51■■■□□ 2.31
RAPGEF1-206ENST00000438647 USP17L22D6RA61 530 aa29.51■■■□□ 2.31
RAPGEF1-206ENST00000438647 USP17L17D6RBQ6 530 aa29.51■■■□□ 2.31
RAPGEF1-206ENST00000438647 USP17L19D6RCP7 530 aa29.51■■■□□ 2.31
RAPGEF1-206ENST00000438647 USP17L20D6RJB6 530 aa29.51■■■□□ 2.31
RAPGEF1-206ENST00000438647 CTGFP29279 349 aa29.51■■■□□ 2.31
RAPGEF1-206ENST00000438647 HERVK_113P62684 666 aa29.51■■■□□ 2.31
RAPGEF1-206ENST00000438647 USP17L24Q0WX57 530 aa29.51■■■□□ 2.31
RAPGEF1-206ENST00000438647 SLC3A2P08195 630 aaKnown RBP29.5■■■□□ 2.31
RAPGEF1-206ENST00000438647 VCAM1P19320 739 aa29.5■■■□□ 2.31
RAPGEF1-206ENST00000438647 SLC9C1Q4G0N8 1177 aa29.5■■■□□ 2.31
RAPGEF1-206ENST00000438647 MCMDC2Q4G0Z9 681 aa29.5■■■□□ 2.31
RAPGEF1-206ENST00000438647 CCDC129Q6ZRS4 1044 aa29.5■■■□□ 2.31
RAPGEF1-206ENST00000438647 NBPF11Q86T75 865 aa29.5■■■□□ 2.31
RAPGEF1-206ENST00000438647 ARMC5Q96C12 935 aa29.5■■■□□ 2.31
RAPGEF1-206ENST00000438647 P2RX7Q99572 595 aaKnown RBP29.5■■■□□ 2.31
RAPGEF1-206ENST00000438647 KANSL2Q9H9L4 492 aa29.5■■■□□ 2.31
RAPGEF1-206ENST00000438647 ZSWIM8A7E2V4 1837 aa29.5■■■□□ 2.31
RAPGEF1-206ENST00000438647 TNPO2O14787 897 aaKnown RBP29.49■■■□□ 2.31
RAPGEF1-206ENST00000438647 MYPNQ86TC9 1320 aa29.48■■■□□ 2.31
RAPGEF1-206ENST00000438647 A0A1W2PRG0 241 aa29.48■■■□□ 2.31
RAPGEF1-206ENST00000438647 FAM227BQ96M60 508 aa29.48■■■□□ 2.31
RAPGEF1-206ENST00000438647 MORF4L1Q9UBU8 362 aa29.48■■■□□ 2.31
RAPGEF1-206ENST00000438647 CENPFP49454 3210 aa29.48■■■□□ 2.31
RAPGEF1-206ENST00000438647 A0A0D9SFI3 127 aa29.47■■■□□ 2.31
RAPGEF1-206ENST00000438647 RASA1P20936 1047 aa29.47■■■□□ 2.31
RAPGEF1-206ENST00000438647 PDE4BQ07343 736 aa29.47■■■□□ 2.31
RAPGEF1-206ENST00000438647 CATSPERGQ6ZRH7 1159 aa29.47■■■□□ 2.31
RAPGEF1-206ENST00000438647 ZNF444Q8N0Y2 327 aaPredicted RBP29.47■■■□□ 2.31
RAPGEF1-206ENST00000438647 STK11IPQ8N1F8 1099 aa29.47■■■□□ 2.31
RAPGEF1-206ENST00000438647 RAET1EQ8TD07 263 aa29.47■■■□□ 2.31
RAPGEF1-206ENST00000438647 LPAR1Q92633 364 aa29.47■■■□□ 2.31
RAPGEF1-206ENST00000438647 TMX2Q9Y320 296 aa29.47■■■□□ 2.31
RAPGEF1-206ENST00000438647 HIP1O00291 1037 aa29.46■■■□□ 2.31
RAPGEF1-206ENST00000438647 RGS19P49795 217 aa29.46■■■□□ 2.31
RAPGEF1-206ENST00000438647 MFAP1P55081 439 aaKnown RBP29.46■■■□□ 2.31
RAPGEF1-206ENST00000438647 SOX10P56693 466 aa29.46■■■□□ 2.31
RAPGEF1-206ENST00000438647 PPARAQ07869 468 aa29.46■■■□□ 2.31
RAPGEF1-206ENST00000438647 NMIQ13287 307 aaPredicted RBP29.46■■■□□ 2.31
RAPGEF1-206ENST00000438647 COA7Q96BR5 231 aa29.46■■■□□ 2.31
RAPGEF1-206ENST00000438647 RPAP3Q9H6T3 665 aaPredicted RBP29.46■■■□□ 2.31
RAPGEF1-206ENST00000438647 MGAMO43451 1857 aa29.45■■■□□ 2.31
RAPGEF1-206ENST00000438647 SDSP20132 328 aa29.45■■■□□ 2.31
RAPGEF1-206ENST00000438647 CLEC10AQ8IUN9 316 aa29.45■■■□□ 2.31
RAPGEF1-206ENST00000438647 GPRC5AQ8NFJ5 357 aa29.45■■■□□ 2.31
RAPGEF1-206ENST00000438647 EEF2P13639 858 aaKnown RBP29.44■■■□□ 2.3
RAPGEF1-206ENST00000438647 ATP2B2Q01814 1243 aa29.44■■■□□ 2.3
RAPGEF1-206ENST00000438647 PRKCZQ05513 592 aa29.44■■■□□ 2.3
RAPGEF1-206ENST00000438647 SIAH1Q8IUQ4 282 aa29.44■■■□□ 2.3
RAPGEF1-206ENST00000438647 VCPKMTQ9H867 229 aa29.44■■■□□ 2.3
RAPGEF1-206ENST00000438647 FOXP2O15409 715 aa29.43■■■□□ 2.3
RAPGEF1-206ENST00000438647 PDE4AP27815 886 aa29.43■■■□□ 2.3
RAPGEF1-206ENST00000438647 ALX1Q15699 326 aa29.43■■■□□ 2.3
RAPGEF1-206ENST00000438647 VPS53Q5VIR6 699 aa29.43■■■□□ 2.3
RAPGEF1-206ENST00000438647 ZNF333Q96JL9 665 aa29.43■■■□□ 2.3
RAPGEF1-206ENST00000438647 DIAPH3Q9NSV4 1193 aa29.43■■■□□ 2.3
RAPGEF1-206ENST00000438647 CCDC171Q6TFL3 1326 aa29.43■■■□□ 2.3
RAPGEF1-206ENST00000438647 LBX2Q6XYB7 198 aa29.42■■■□□ 2.3
RAPGEF1-206ENST00000438647 PAGR1Q9BTK6 254 aa29.42■■■□□ 2.3
RAPGEF1-206ENST00000438647 GNL3Q9BVP2 549 aaKnown RBP eCLIP29.42■■■□□ 2.3
RAPGEF1-206ENST00000438647 GOPCQ9HD26 462 aa29.42■■■□□ 2.3
Retrieved 100 of 20,778 RNA–protein pairs in 27.3 ms