RNA–Protein interactions for RNA: ENST00000428287.6

RIF1-203, Transcript of replication timing regulatory factor 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene RIF1, Length 7,722 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RIF1-203ENST00000428287 SENP2Q9HC62 589 aa5.81□□□□□ -1.48
RIF1-203ENST00000428287 LAMA2P24043 3122 aaKnown RBP5.81□□□□□ -1.48
RIF1-203ENST00000428287 RTTNQ86VV8 2226 aa5.81□□□□□ -1.48
RIF1-203ENST00000428287 CTAGE15A4D2H0 777 aa5.81□□□□□ -1.48
RIF1-203ENST00000428287 CTAGE8P0CG41 777 aa5.81□□□□□ -1.48
RIF1-203ENST00000428287 KANK3Q6NY19 840 aa5.81□□□□□ -1.48
RIF1-203ENST00000428287 CTAGE6Q86UF2 777 aa5.81□□□□□ -1.48
RIF1-203ENST00000428287 AACSQ86V21 672 aa5.81□□□□□ -1.48
RIF1-203ENST00000428287 CTAGE4Q8IX94 777 aa5.81□□□□□ -1.48
RIF1-203ENST00000428287 ZBTB9Q96C00 473 aa5.81□□□□□ -1.48
RIF1-203ENST00000428287 KCNMB3Q9NPA1 279 aa5.81□□□□□ -1.48
RIF1-203ENST00000428287 HSPD1P10809 573 aaKnown RBP5.81□□□□□ -1.48
RIF1-203ENST00000428287 CREG2Q8IUH2 290 aa5.81□□□□□ -1.48
RIF1-203ENST00000428287 CD302Q8IX05 232 aa5.81□□□□□ -1.48
RIF1-203ENST00000428287 FUKQ8N0W3 1084 aa5.81□□□□□ -1.48
RIF1-203ENST00000428287 SMARCC1Q92922 1105 aaPredicted RBP5.81□□□□□ -1.48
RIF1-203ENST00000428287 SAR1BQ9Y6B6 198 aa5.81□□□□□ -1.48
RIF1-203ENST00000428287 C1orf167Q5SNV9 1468 aa5.81□□□□□ -1.48
RIF1-203ENST00000428287 ACEP12821 1306 aa5.8□□□□□ -1.48
RIF1-203ENST00000428287 E7EWF7 191 aa5.8□□□□□ -1.48
RIF1-203ENST00000428287 BIN1O00499 593 aa5.8□□□□□ -1.48
RIF1-203ENST00000428287 INHBEP58166 350 aa5.8□□□□□ -1.48
RIF1-203ENST00000428287 IRX1P78414 480 aaPredicted RBP5.8□□□□□ -1.48
RIF1-203ENST00000428287 FMR1Q06787 632 aaKnown RBP eCLIP5.8□□□□□ -1.481e-6■■■□□ 15.5
RIF1-203ENST00000428287 GNL2Q13823 731 aaKnown RBP5.8□□□□□ -1.48
RIF1-203ENST00000428287 GSDMAQ96QA5 445 aa5.8□□□□□ -1.48
RIF1-203ENST00000428287 CPDO75976 1380 aa5.8□□□□□ -1.48
RIF1-203ENST00000428287 PHACTR2O75167 634 aa5.8□□□□□ -1.48
RIF1-203ENST00000428287 PDE4BQ07343 736 aa5.8□□□□□ -1.48
RIF1-203ENST00000428287 MKRN4PQ13434 485 aaPredicted RBP5.8□□□□□ -1.48
RIF1-203ENST00000428287 CCDC40Q4G0X9 1142 aa5.8□□□□□ -1.48
RIF1-203ENST00000428287 FIGNQ5HY92 759 aa5.8□□□□□ -1.48
RIF1-203ENST00000428287 RIN2Q8WYP3 895 aaPredicted RBP5.8□□□□□ -1.48
RIF1-203ENST00000428287 CRACR2AQ9BSW2 395 aa5.8□□□□□ -1.48
RIF1-203ENST00000428287 OSBPL7Q9BZF2 842 aa5.8□□□□□ -1.48
RIF1-203ENST00000428287 TTYH3Q9C0H2 523 aa5.8□□□□□ -1.48
RIF1-203ENST00000428287 GPR108Q9NPR9 543 aa5.8□□□□□ -1.48
RIF1-203ENST00000428287 KCNH3Q9ULD8 1083 aa5.8□□□□□ -1.48
RIF1-203ENST00000428287 ODF2LQ9ULJ1 636 aa5.8□□□□□ -1.48
RIF1-203ENST00000428287 LIG3P49916 1009 aa5.8□□□□□ -1.48
RIF1-203ENST00000428287 CEBPZQ03701 1054 aaKnown RBP5.8□□□□□ -1.48
RIF1-203ENST00000428287 FAM177A1Q8N128 213 aaPredicted RBP5.8□□□□□ -1.48
RIF1-203ENST00000428287 PPIL4Q8WUA2 492 aaKnown RBP eCLIP5.8□□□□□ -1.482e-6■■□□□ 13.3
RIF1-203ENST00000428287 EBF2Q9HAK2 575 aa5.8□□□□□ -1.48
RIF1-203ENST00000428287 REXO2Q9Y3B8 237 aaKnown RBP5.8□□□□□ -1.48
RIF1-203ENST00000428287 GOLGA6CA6NDK9 693 aa5.8□□□□□ -1.48
RIF1-203ENST00000428287 ABL1P00519 1130 aa5.8□□□□□ -1.48
RIF1-203ENST00000428287 GOLGA6DP0CG33 693 aa5.8□□□□□ -1.48
RIF1-203ENST00000428287 ZKSCAN8Q15776 578 aaPredicted RBP5.8□□□□□ -1.48
RIF1-203ENST00000428287 FAM76AQ8TAV0 307 aa5.8□□□□□ -1.48
RIF1-203ENST00000428287 ATP6V0A4Q9HBG4 840 aa5.8□□□□□ -1.48
RIF1-203ENST00000428287 GOLGA6AQ9NYA3 693 aa5.8□□□□□ -1.48
RIF1-203ENST00000428287 STK36Q9NRP7 1315 aa5.8□□□□□ -1.48
RIF1-203ENST00000428287 PPP1R37O75864 691 aa5.8□□□□□ -1.48
RIF1-203ENST00000428287 CDK17Q00537 523 aa5.8□□□□□ -1.48
RIF1-203ENST00000428287 TBC1D8BQ0IIM8 1120 aa5.8□□□□□ -1.48
RIF1-203ENST00000428287 IRF2BP1Q8IU81 584 aa5.8□□□□□ -1.48
RIF1-203ENST00000428287 CTAGE1Q96RT6 745 aa5.8□□□□□ -1.48
RIF1-203ENST00000428287 ABHD10Q9NUJ1 306 aa5.8□□□□□ -1.48
RIF1-203ENST00000428287 C9orf78Q9NZ63 289 aaPredicted RBP5.8□□□□□ -1.48
RIF1-203ENST00000428287 PLCH1Q4KWH8 1693 aa5.8□□□□□ -1.48
RIF1-203ENST00000428287 PDE2AO00408 941 aaPredicted RBP5.8□□□□□ -1.48
RIF1-203ENST00000428287 PTPN12Q05209 780 aaKnown RBP5.8□□□□□ -1.48
RIF1-203ENST00000428287 NCOA5Q9HCD5 579 aaKnown RBP5.8□□□□□ -1.48
RIF1-203ENST00000428287 HOMER3Q9NSC5 361 aa5.8□□□□□ -1.48
RIF1-203ENST00000428287 FAM217BQ9NTX9 383 aaPredicted RBP5.8□□□□□ -1.48
RIF1-203ENST00000428287 CHPF2Q9P2E5 772 aa5.8□□□□□ -1.48
RIF1-203ENST00000428287 TBC1D2BQ9UPU7 963 aa5.8□□□□□ -1.48
RIF1-203ENST00000428287 A0A1W2PQC6 194 aa5.79□□□□□ -1.48
RIF1-203ENST00000428287 APPP05067 770 aa5.79□□□□□ -1.48
RIF1-203ENST00000428287 LIFRP42702 1097 aa5.79□□□□□ -1.48
RIF1-203ENST00000428287 POSTNQ15063 836 aa5.79□□□□□ -1.48
RIF1-203ENST00000428287 WDR59Q6PJI9 974 aa5.79□□□□□ -1.48
RIF1-203ENST00000428287 MYCBPAPQ8TBZ2 947 aa5.79□□□□□ -1.48
RIF1-203ENST00000428287 HELLSQ9NRZ9 838 aa5.79□□□□□ -1.48
RIF1-203ENST00000428287 NDUFA10O95299 355 aa5.79□□□□□ -1.48
RIF1-203ENST00000428287 SYNE3Q6ZMZ3 975 aa5.79□□□□□ -1.48
RIF1-203ENST00000428287 FMNL3Q8IVF7 1028 aa5.79□□□□□ -1.48
RIF1-203ENST00000428287 OTUD6BQ8N6M0 293 aa5.79□□□□□ -1.48
RIF1-203ENST00000428287 OR8K1Q8NGG5 319 aa5.79□□□□□ -1.48
RIF1-203ENST00000428287 EDC3Q96F86 508 aaKnown RBP5.79□□□□□ -1.48
RIF1-203ENST00000428287 MTA3Q9BTC8 594 aa5.79□□□□□ -1.48
RIF1-203ENST00000428287 HOOK1Q9UJC3 728 aaKnown RBP5.79□□□□□ -1.48
RIF1-203ENST00000428287 SLIT3O75094 1523 aa5.79□□□□□ -1.48
RIF1-203ENST00000428287 GOLGA6BA6NDN3 693 aa5.79□□□□□ -1.48
RIF1-203ENST00000428287 SOWAHDA6NJG2 315 aa5.79□□□□□ -1.48
RIF1-203ENST00000428287 PPFIA3O75145 1194 aa5.79□□□□□ -1.48
RIF1-203ENST00000428287 TRIM14Q14142 442 aa5.79□□□□□ -1.48
RIF1-203ENST00000428287 KIAA0753Q2KHM9 967 aa5.79□□□□□ -1.48
RIF1-203ENST00000428287 NBPF14Q5TI25 921 aa5.79□□□□□ -1.48
RIF1-203ENST00000428287 MMGT1Q8N4V1 131 aa5.79□□□□□ -1.48
RIF1-203ENST00000428287 CAPS2Q9BXY5 557 aa5.79□□□□□ -1.48
RIF1-203ENST00000428287 STRN4Q9NRL3 753 aa5.79□□□□□ -1.48
RIF1-203ENST00000428287 FBXO3Q9UK99 471 aa5.79□□□□□ -1.48
RIF1-203ENST00000428287 ANGEL1Q9UNK9 670 aaKnown RBP5.79□□□□□ -1.48
RIF1-203ENST00000428287 PLAGL2Q9UPG8 496 aa5.79□□□□□ -1.48
RIF1-203ENST00000428287 RGPD3A6NKT7 1758 aaPredicted RBP5.79□□□□□ -1.48
RIF1-203ENST00000428287 RGPD4Q7Z3J3 1758 aa5.79□□□□□ -1.48
RIF1-203ENST00000428287 GBF1Q92538 1859 aa5.79□□□□□ -1.48
RIF1-203ENST00000428287 ROBO2Q9HCK4 1378 aa5.79□□□□□ -1.48
Retrieved 100 of 20,778 RNA–protein pairs in 25.7 ms