RNA–Protein interactions for RNA: ENST00000381753.8

LIMCH1-202, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 5,705 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-202ENST00000381753 MAK16Q9BXY0 300 aaKnown RBP10.34□□□□□ -0.75
LIMCH1-202ENST00000381753 TTC12Q9H892 705 aaPredicted RBP10.34□□□□□ -0.75
LIMCH1-202ENST00000381753 ERBB3P21860 1342 aa10.34□□□□□ -0.75
LIMCH1-202ENST00000381753 HECW2Q9P2P5 1572 aa10.34□□□□□ -0.75
LIMCH1-202ENST00000381753 CBFA2T2O43439 604 aa10.34□□□□□ -0.75
LIMCH1-202ENST00000381753 GOLGA8FQ08AF8 430 aa10.34□□□□□ -0.75
LIMCH1-202ENST00000381753 GOLGA8DPQ0D2H9 430 aa10.34□□□□□ -0.75
LIMCH1-202ENST00000381753 JAKMIP2Q96AA8 810 aa10.34□□□□□ -0.75
LIMCH1-202ENST00000381753 YME1L1Q96TA2 773 aa10.34□□□□□ -0.75
LIMCH1-202ENST00000381753 ENTPD7Q9NQZ7 604 aa10.34□□□□□ -0.75
LIMCH1-202ENST00000381753 LRRIQ4A6NIV6 560 aa10.34□□□□□ -0.75
LIMCH1-202ENST00000381753 ASB14A6NK59 587 aa10.34□□□□□ -0.75
LIMCH1-202ENST00000381753 TNNC2P02585 160 aa10.34□□□□□ -0.75
LIMCH1-202ENST00000381753 MARK3P27448 753 aa10.34□□□□□ -0.75
LIMCH1-202ENST00000381753 MCM7P33993 719 aa10.34□□□□□ -0.75
LIMCH1-202ENST00000381753 FAM47AQ5JRC9 791 aa10.34□□□□□ -0.75
LIMCH1-202ENST00000381753 MAGI3Q5TCQ9 1506 aa10.34□□□□□ -0.75
LIMCH1-202ENST00000381753 PRAMEF18Q5VWM3 479 aa10.34□□□□□ -0.75
LIMCH1-202ENST00000381753 CNNM3Q8NE01 707 aa10.34□□□□□ -0.75
LIMCH1-202ENST00000381753 LZTS2Q9BRK4 669 aa10.34□□□□□ -0.75
LIMCH1-202ENST00000381753 HMG20BQ9P0W2 317 aa10.34□□□□□ -0.75
LIMCH1-202ENST00000381753 ADCY9O60503 1353 aa10.33□□□□□ -0.76
LIMCH1-202ENST00000381753 ERVV-1B6SEH8 477 aa10.33□□□□□ -0.76
LIMCH1-202ENST00000381753 KRT10P13645 584 aa10.33□□□□□ -0.76
LIMCH1-202ENST00000381753 STAT2P52630 851 aa10.33□□□□□ -0.76
LIMCH1-202ENST00000381753 CACNB3P54284 484 aa10.33□□□□□ -0.76
LIMCH1-202ENST00000381753 OR6J1Q8NGC5 347 aa10.33□□□□□ -0.76
LIMCH1-202ENST00000381753 IPO9Q96P70 1041 aaKnown RBP10.33□□□□□ -0.76
LIMCH1-202ENST00000381753 SLC4A7Q9Y6M7 1214 aa10.33□□□□□ -0.76
LIMCH1-202ENST00000381753 ZMYND10O75800 440 aa10.33□□□□□ -0.76
LIMCH1-202ENST00000381753 TBC1D8O95759 1140 aa10.33□□□□□ -0.76
LIMCH1-202ENST00000381753 CCDC14Q49A88 953 aa10.33□□□□□ -0.76
LIMCH1-202ENST00000381753 SP8Q8IXZ3 490 aa10.33□□□□□ -0.76
LIMCH1-202ENST00000381753 THNSL1Q8IYQ7 743 aa10.33□□□□□ -0.76
LIMCH1-202ENST00000381753 IPO11Q9UI26 975 aaKnown RBP10.33□□□□□ -0.76
LIMCH1-202ENST00000381753 USP17L15C9J2P7 530 aa10.33□□□□□ -0.76
LIMCH1-202ENST00000381753 USP17L13C9JLJ4 530 aa10.33□□□□□ -0.76
LIMCH1-202ENST00000381753 USP17L11C9JVI0 530 aa10.33□□□□□ -0.76
LIMCH1-202ENST00000381753 USP17L18D6R9N7 530 aa10.33□□□□□ -0.76
LIMCH1-202ENST00000381753 USP17L22D6RA61 530 aa10.33□□□□□ -0.76
LIMCH1-202ENST00000381753 USP17L17D6RBQ6 530 aa10.33□□□□□ -0.76
LIMCH1-202ENST00000381753 USP17L19D6RCP7 530 aa10.33□□□□□ -0.76
LIMCH1-202ENST00000381753 USP17L20D6RJB6 530 aa10.33□□□□□ -0.76
LIMCH1-202ENST00000381753 INO80B-WBP1J3KQ70 363 aa10.33□□□□□ -0.76
LIMCH1-202ENST00000381753 RBM25P49756 843 aaKnown RBP10.33□□□□□ -0.76
LIMCH1-202ENST00000381753 USP17L24Q0WX57 530 aa10.33□□□□□ -0.76
LIMCH1-202ENST00000381753 KRT33BQ14525 404 aa10.33□□□□□ -0.76
LIMCH1-202ENST00000381753 RASA3Q14644 834 aa10.33□□□□□ -0.76
LIMCH1-202ENST00000381753 INO80BQ9C086 356 aaPredicted RBP10.33□□□□□ -0.76
LIMCH1-202ENST00000381753 TNMDQ9H2S6 317 aa10.33□□□□□ -0.76
LIMCH1-202ENST00000381753 CD19P15391 556 aa10.33□□□□□ -0.76
LIMCH1-202ENST00000381753 POTEAQ6S8J7 498 aa10.33□□□□□ -0.76
LIMCH1-202ENST00000381753 IGFLR1Q9H665 355 aa10.33□□□□□ -0.76
LIMCH1-202ENST00000381753 BABAM1Q9NWV8 329 aa10.33□□□□□ -0.76
LIMCH1-202ENST00000381753 BNIP3LO60238 219 aa10.32□□□□□ -0.76
LIMCH1-202ENST00000381753 CCNT1O60563 726 aaKnown RBP10.32□□□□□ -0.76
LIMCH1-202ENST00000381753 SAMD7Q7Z3H4 446 aa10.32□□□□□ -0.76
LIMCH1-202ENST00000381753 TAX1BP1Q86VP1 789 aa10.32□□□□□ -0.76
LIMCH1-202ENST00000381753 TPH2Q8IWU9 490 aa10.32□□□□□ -0.76
LIMCH1-202ENST00000381753 KANSL2Q9H9L4 492 aa10.32□□□□□ -0.76
LIMCH1-202ENST00000381753 TPCN1Q9ULQ1 816 aa10.32□□□□□ -0.76
LIMCH1-202ENST00000381753 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP10.32□□□□□ -0.76
LIMCH1-202ENST00000381753 TEX35Q5T0J7 233 aa10.32□□□□□ -0.76
LIMCH1-202ENST00000381753 LIN9Q5TKA1 542 aa10.32□□□□□ -0.76
LIMCH1-202ENST00000381753 TWF2Q6IBS0 349 aaKnown RBP10.32□□□□□ -0.76
LIMCH1-202ENST00000381753 DSTYKQ6XUX3 929 aa10.32□□□□□ -0.76
LIMCH1-202ENST00000381753 GPRC5AQ8NFJ5 357 aa10.32□□□□□ -0.76
LIMCH1-202ENST00000381753 TTLL3Q9Y4R7 772 aa10.32□□□□□ -0.76
LIMCH1-202ENST00000381753 IQSEC2Q5JU85 1478 aa10.32□□□□□ -0.76
LIMCH1-202ENST00000381753 RIMS1Q86UR5 1692 aaKnown RBP10.32□□□□□ -0.76
LIMCH1-202ENST00000381753 ERBB4Q15303 1308 aa10.32□□□□□ -0.76
LIMCH1-202ENST00000381753 UBN2Q6ZU65 1347 aa10.32□□□□□ -0.76
LIMCH1-202ENST00000381753 MNS1Q8NEH6 495 aa10.32□□□□□ -0.76
LIMCH1-202ENST00000381753 TEKT3Q9BXF9 490 aa10.32□□□□□ -0.76
LIMCH1-202ENST00000381753 SEC31BQ9NQW1 1179 aa10.32□□□□□ -0.76
LIMCH1-202ENST00000381753 ODF2LQ9ULJ1 636 aa10.32□□□□□ -0.76
LIMCH1-202ENST00000381753 SOS1Q07889 1333 aaPredicted RBP10.32□□□□□ -0.76
LIMCH1-202ENST00000381753 HOXB7P09629 217 aa10.32□□□□□ -0.76
LIMCH1-202ENST00000381753 CALRP27797 417 aaKnown RBP10.32□□□□□ -0.76
LIMCH1-202ENST00000381753 LIG4P49917 911 aa10.32□□□□□ -0.76
LIMCH1-202ENST00000381753 ADAT2Q7Z6V5 191 aaKnown RBP10.32□□□□□ -0.76
LIMCH1-202ENST00000381753 FOXP4Q8IVH2 680 aaPredicted RBP10.32□□□□□ -0.76
LIMCH1-202ENST00000381753 PUS7Q96PZ0 661 aaKnown RBP10.32□□□□□ -0.76
LIMCH1-202ENST00000381753 ERVK-7P63135 1459 aa10.32□□□□□ -0.76
LIMCH1-202ENST00000381753 SNRNP48Q6IEG0 339 aaKnown RBP10.32□□□□□ -0.76
LIMCH1-202ENST00000381753 IQCEQ6IPM2 695 aa10.32□□□□□ -0.76
LIMCH1-202ENST00000381753 TBC1D9Q6ZT07 1266 aa10.32□□□□□ -0.76
LIMCH1-202ENST00000381753 CATSPER4Q7RTX7 472 aa10.32□□□□□ -0.76
LIMCH1-202ENST00000381753 FAM160B2Q86V87 743 aa10.32□□□□□ -0.76
LIMCH1-202ENST00000381753 MYOCDQ8IZQ8 938 aa10.32□□□□□ -0.76
LIMCH1-202ENST00000381753 RAB3IL1Q8TBN0 382 aa10.32□□□□□ -0.76
LIMCH1-202ENST00000381753 KATNAL1Q9BW62 490 aa10.32□□□□□ -0.76
LIMCH1-202ENST00000381753 HMX1Q9NP08 348 aaPredicted RBP10.32□□□□□ -0.76
LIMCH1-202ENST00000381753 MTUS1Q9ULD2 1270 aa10.32□□□□□ -0.76
LIMCH1-202ENST00000381753 SPAG5Q96R06 1193 aa10.31□□□□□ -0.76
LIMCH1-202ENST00000381753 GREM2Q9H772 168 aa10.31□□□□□ -0.76
LIMCH1-202ENST00000381753 CACYBPQ9HB71 228 aaKnown RBP10.31□□□□□ -0.76
LIMCH1-202ENST00000381753 ZBTB12Q9Y330 459 aaPredicted RBP10.31□□□□□ -0.76
LIMCH1-202ENST00000381753 CTTNBP2Q8WZ74 1663 aa10.31□□□□□ -0.76
LIMCH1-202ENST00000381753 BMP3P12645 472 aa10.31□□□□□ -0.76
Retrieved 100 of 20,778 RNA–protein pairs in 19.5 ms