RNA–Protein interactions for RNA: ENST00000330374.6

VMA21-201, Transcript of VMA21, vacuolar ATPase assembly factor, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VMA21, Length 4,717 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VMA21-201ENST00000330374 UBR1Q8IWV7 1749 aa8.93□□□□□ -0.98
VMA21-201ENST00000330374 H7C1W4 665 aa8.93□□□□□ -0.98
VMA21-201ENST00000330374 IVLP07476 585 aa8.93□□□□□ -0.98
VMA21-201ENST00000330374 PPARDQ03181 441 aa8.93□□□□□ -0.98
VMA21-201ENST00000330374 LRP10Q7Z4F1 713 aa8.93□□□□□ -0.98
VMA21-201ENST00000330374 DDX17Q92841 729 aaKnown RBP8.93□□□□□ -0.98
VMA21-201ENST00000330374 RNF40O75150 1001 aa8.93□□□□□ -0.98
VMA21-201ENST00000330374 BRD2P25440 801 aaKnown RBP8.93□□□□□ -0.98
VMA21-201ENST00000330374 PLCD1P51178 756 aa8.93□□□□□ -0.98
VMA21-201ENST00000330374 MORC3Q14149 939 aa8.93□□□□□ -0.98
VMA21-201ENST00000330374 SART3Q15020 963 aaKnown RBP8.93□□□□□ -0.98
VMA21-201ENST00000330374 DNAJC21Q5F1R6 531 aaKnown RBP8.93□□□□□ -0.98
VMA21-201ENST00000330374 TTC19Q6DKK2 380 aaPredicted RBP8.93□□□□□ -0.98
VMA21-201ENST00000330374 HELBQ8NG08 1087 aaPredicted RBP8.93□□□□□ -0.98
VMA21-201ENST00000330374 TRAIPQ9BWF2 469 aa8.93□□□□□ -0.98
VMA21-201ENST00000330374 RNF225M0QZC1 329 aaPredicted RBP8.92□□□□□ -0.98
VMA21-201ENST00000330374 MLLT3P42568 568 aaPredicted RBP8.92□□□□□ -0.98
VMA21-201ENST00000330374 LRRC31Q6UY01 552 aa8.92□□□□□ -0.98
VMA21-201ENST00000330374 SPDYE1Q8NFV5 336 aaPredicted RBP8.92□□□□□ -0.98
VMA21-201ENST00000330374 ATG3Q9NT62 314 aa8.92□□□□□ -0.98
VMA21-201ENST00000330374 MFAP3LO75121 409 aa8.92□□□□□ -0.98
VMA21-201ENST00000330374 IFNL2Q8IZJ0 200 aa8.92□□□□□ -0.98
VMA21-201ENST00000330374 AIDAQ96BJ3 306 aa8.92□□□□□ -0.98
VMA21-201ENST00000330374 FBXO2Q9UK22 296 aaPredicted RBP8.92□□□□□ -0.98
VMA21-201ENST00000330374 A0A1B0GTH6 734 aa8.92□□□□□ -0.98
VMA21-201ENST00000330374 PRDM1O75626 825 aa8.92□□□□□ -0.98
VMA21-201ENST00000330374 GPTP24298 496 aa8.92□□□□□ -0.98
VMA21-201ENST00000330374 MCAMP43121 646 aa8.92□□□□□ -0.98
VMA21-201ENST00000330374 NOP2P46087 812 aaKnown RBP8.92□□□□□ -0.98
VMA21-201ENST00000330374 MICALL1Q8N3F8 863 aa8.92□□□□□ -0.98
VMA21-201ENST00000330374 BAZ2BQ9UIF8 2168 aaKnown RBP8.92□□□□□ -0.98
VMA21-201ENST00000330374 ZNF532Q9HCE3 1301 aa8.92□□□□□ -0.98
VMA21-201ENST00000330374 GYPCP04921 128 aa8.92□□□□□ -0.98
VMA21-201ENST00000330374 ZFYP08048 801 aaPredicted RBP8.92□□□□□ -0.98
VMA21-201ENST00000330374 TRIM22Q8IYM9 498 aa8.92□□□□□ -0.98
VMA21-201ENST00000330374 GPATCH11Q8N954 259 aa8.92□□□□□ -0.98
VMA21-201ENST00000330374 CAGE1Q8TC20 777 aa8.92□□□□□ -0.98
VMA21-201ENST00000330374 PANX2Q96RD6 677 aa8.92□□□□□ -0.98
VMA21-201ENST00000330374 DDX24Q9GZR7 859 aaKnown RBP eCLIP8.92□□□□□ -0.98
VMA21-201ENST00000330374 FAM217BQ9NTX9 383 aaPredicted RBP8.92□□□□□ -0.98
VMA21-201ENST00000330374 ZSWIM5Q9P217 1185 aa8.92□□□□□ -0.98
VMA21-201ENST00000330374 MRC1P22897 1456 aa8.91□□□□□ -0.98
VMA21-201ENST00000330374 A0A087X0B3 334 aa8.91□□□□□ -0.98
VMA21-201ENST00000330374 SNAP23O00161 211 aa8.91□□□□□ -0.98
VMA21-201ENST00000330374 CYP27B1O15528 508 aa8.91□□□□□ -0.98
VMA21-201ENST00000330374 ERVK-24P63145 666 aa8.91□□□□□ -0.98
VMA21-201ENST00000330374 CHP1Q99653 195 aa8.91□□□□□ -0.98
VMA21-201ENST00000330374 WWC3Q9ULE0 1092 aa8.91□□□□□ -0.98
VMA21-201ENST00000330374 CPDO75976 1380 aa8.91□□□□□ -0.98
VMA21-201ENST00000330374 PTPREP23469 700 aa8.91□□□□□ -0.98
VMA21-201ENST00000330374 KRT9P35527 623 aa8.91□□□□□ -0.98
VMA21-201ENST00000330374 NTRK3Q16288 839 aa8.91□□□□□ -0.98
VMA21-201ENST00000330374 PPP1R3FQ6ZSY5 799 aaPredicted RBP8.91□□□□□ -0.98
VMA21-201ENST00000330374 SMARCC1Q92922 1105 aaPredicted RBP8.91□□□□□ -0.98
VMA21-201ENST00000330374 NAPBQ9H115 298 aa8.91□□□□□ -0.98
VMA21-201ENST00000330374 LY9Q9HBG7 655 aa8.91□□□□□ -0.98
VMA21-201ENST00000330374 POLD4Q9HCU8 107 aa8.91□□□□□ -0.98
VMA21-201ENST00000330374 PIH1D3Q9NQM4 214 aaKnown RBP8.91□□□□□ -0.98
VMA21-201ENST00000330374 EIF4ENIF1Q9NRA8 985 aaKnown RBP8.91□□□□□ -0.98
VMA21-201ENST00000330374 CNNM1Q9NRU3 951 aa8.91□□□□□ -0.98
VMA21-201ENST00000330374 PSD3Q9NYI0 1048 aa8.91□□□□□ -0.98
VMA21-201ENST00000330374 MYO6Q9UM54 1294 aa8.91□□□□□ -0.98
VMA21-201ENST00000330374 POTEB2H3BUK9 544 aa8.91□□□□□ -0.98
VMA21-201ENST00000330374 ZNF174Q15697 407 aa8.91□□□□□ -0.98
VMA21-201ENST00000330374 RRAGBQ5VZM2 374 aa8.91□□□□□ -0.98
VMA21-201ENST00000330374 CCDC148Q8NFR7 591 aa8.91□□□□□ -0.98
VMA21-201ENST00000330374 VPS54Q9P1Q0 977 aa8.91□□□□□ -0.98
VMA21-201ENST00000330374 KDM6AO15550 1401 aaPredicted RBP8.91□□□□□ -0.98
VMA21-201ENST00000330374 ACTN4O43707 911 aaKnown RBP8.9□□□□□ -0.98
VMA21-201ENST00000330374 MMP1P03956 469 aa8.9□□□□□ -0.98
VMA21-201ENST00000330374 MATR3P43243 847 aaKnown RBP eCLIP8.9□□□□□ -0.98
VMA21-201ENST00000330374 SPATA1Q5VX52 437 aa8.9□□□□□ -0.98
VMA21-201ENST00000330374 CTR9Q6PD62 1173 aa8.9□□□□□ -0.98
VMA21-201ENST00000330374 LDHAL6AQ6ZMR3 332 aa8.9□□□□□ -0.98
VMA21-201ENST00000330374 AFAP1L1Q8TED9 768 aa8.9□□□□□ -0.98
VMA21-201ENST00000330374 EHD4Q9H223 541 aa8.9□□□□□ -0.98
VMA21-201ENST00000330374 JRKLQ9Y4A0 524 aa8.9□□□□□ -0.98
VMA21-201ENST00000330374 PRKAB2O43741 272 aa8.9□□□□□ -0.98
VMA21-201ENST00000330374 IFIT5Q13325 482 aaKnown RBP8.9□□□□□ -0.98
VMA21-201ENST00000330374 RTN1Q16799 776 aa8.9□□□□□ -0.98
VMA21-201ENST00000330374 IGDCC4Q8TDY8 1250 aa8.9□□□□□ -0.98
VMA21-201ENST00000330374 ACBD3Q9H3P7 528 aa8.9□□□□□ -0.98
VMA21-201ENST00000330374 ARMT1Q9H993 441 aa8.9□□□□□ -0.98
VMA21-201ENST00000330374 GPR108Q9NPR9 543 aa8.9□□□□□ -0.98
VMA21-201ENST00000330374 ADD3Q9UEY8 706 aaKnown RBP8.9□□□□□ -0.98
VMA21-201ENST00000330374 LIG3P49916 1009 aa8.9□□□□□ -0.98
VMA21-201ENST00000330374 DPYDQ12882 1025 aa8.9□□□□□ -0.98
VMA21-201ENST00000330374 MSANTD4Q8NCY6 345 aa8.9□□□□□ -0.98
VMA21-201ENST00000330374 FAM71BQ8TC56 605 aa8.9□□□□□ -0.98
VMA21-201ENST00000330374 SYMPKQ92797 1274 aaKnown RBP8.9□□□□□ -0.98
VMA21-201ENST00000330374 GBP3Q9H0R5 595 aa8.9□□□□□ -0.98
VMA21-201ENST00000330374 RAB21Q9UL25 225 aa8.9□□□□□ -0.98
VMA21-201ENST00000330374 PLEKHG2Q9H7P9 1386 aa8.9□□□□□ -0.99
VMA21-201ENST00000330374 MYO1BO43795 1136 aa8.9□□□□□ -0.99
VMA21-201ENST00000330374 PIP4K2BP78356 416 aa8.9□□□□□ -0.99
VMA21-201ENST00000330374 ICE2Q659A1 982 aa8.9□□□□□ -0.99
VMA21-201ENST00000330374 RASGRP2Q7LDG7 609 aa8.9□□□□□ -0.99
VMA21-201ENST00000330374 CNGA4Q8IV77 575 aa8.9□□□□□ -0.99
VMA21-201ENST00000330374 HNRNPLLQ8WVV9 542 aaKnown RBP8.9□□□□□ -0.99
VMA21-201ENST00000330374 EFCC1Q9HA90 598 aa8.9□□□□□ -0.99
Retrieved 100 of 20,778 RNA–protein pairs in 115 ms