RNA–Protein interactions for RNA: ENST00000320578.2

RAB39A-201, Transcript of RAB39A, member RAS oncogene family, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene RAB39A, Length 1,830 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RAB39A-201ENST00000320578 GOLGA6L4A6NEF3 574 aa20.66■□□□□ 0.9
RAB39A-201ENST00000320578 MMP1P03956 469 aa20.66■□□□□ 0.9
RAB39A-201ENST00000320578 NASPP49321 788 aaPredicted RBP20.66■□□□□ 0.9
RAB39A-201ENST00000320578 PICALMQ13492 652 aa20.66■□□□□ 0.9
RAB39A-201ENST00000320578 GRM4Q14833 912 aa20.66■□□□□ 0.9
RAB39A-201ENST00000320578 DALRD3Q5D0E6 543 aaKnown RBP20.66■□□□□ 0.9
RAB39A-201ENST00000320578 RSBN1LQ6PCB5 846 aaPredicted RBP20.66■□□□□ 0.9
RAB39A-201ENST00000320578 LARGE2Q8N3Y3 721 aa20.66■□□□□ 0.9
RAB39A-201ENST00000320578 SGIP1Q9BQI5 828 aa20.66■□□□□ 0.9
RAB39A-201ENST00000320578 FOXP1Q9H334 677 aaPredicted RBP20.66■□□□□ 0.9
RAB39A-201ENST00000320578 KIF28PB7ZC32 967 aa20.65■□□□□ 0.9
RAB39A-201ENST00000320578 GUCY1A2P33402 732 aa20.65■□□□□ 0.9
RAB39A-201ENST00000320578 PPP4R3BQ5MIZ7 849 aa20.65■□□□□ 0.9
RAB39A-201ENST00000320578 LRSAM1Q6UWE0 723 aa20.65■□□□□ 0.9
RAB39A-201ENST00000320578 GMLQ99445 158 aa20.65■□□□□ 0.9
RAB39A-201ENST00000320578 LZTS2Q9BRK4 669 aa20.65■□□□□ 0.9
RAB39A-201ENST00000320578 ATF5Q9Y2D1 282 aaPredicted RBP20.65■□□□□ 0.9
RAB39A-201ENST00000320578 MMP14P50281 582 aa20.64■□□□□ 0.9
RAB39A-201ENST00000320578 PKN1Q16512 942 aa20.64■□□□□ 0.9
RAB39A-201ENST00000320578 GAS2L3Q86XJ1 694 aa20.64■□□□□ 0.9
RAB39A-201ENST00000320578 FAM177A1Q8N128 213 aaPredicted RBP20.64■□□□□ 0.9
RAB39A-201ENST00000320578 GNL3Q9BVP2 549 aaKnown RBP eCLIP20.64■□□□□ 0.9
RAB39A-201ENST00000320578 GJB4Q9NTQ9 266 aa20.64■□□□□ 0.9
RAB39A-201ENST00000320578 COL2A1P02458 1487 aaPredicted RBP20.64■□□□□ 0.89
RAB39A-201ENST00000320578 CNTNAP5Q8WYK1 1306 aa20.64■□□□□ 0.89
RAB39A-201ENST00000320578 ENTPD3O75355 529 aa20.64■□□□□ 0.89
RAB39A-201ENST00000320578 PLEKHA8P1O95397 391 aa20.64■□□□□ 0.89
RAB39A-201ENST00000320578 TOP1P11387 765 aaKnown RBP20.64■□□□□ 0.89
RAB39A-201ENST00000320578 SRBD1Q8N5C6 995 aaKnown RBP20.64■□□□□ 0.89
RAB39A-201ENST00000320578 KCNG4Q8TDN1 519 aa20.64■□□□□ 0.89
RAB39A-201ENST00000320578 PGBD1Q96JS3 809 aa20.64■□□□□ 0.89
RAB39A-201ENST00000320578 TMEM47Q9BQJ4 181 aa20.64■□□□□ 0.89
RAB39A-201ENST00000320578 ZNRF3Q9ULT6 936 aa20.64■□□□□ 0.89
RAB39A-201ENST00000320578 IGKV6D-41A0A0C4DH26 115 aa20.63■□□□□ 0.89
RAB39A-201ENST00000320578 SMARCA1P28370 1054 aa20.63■□□□□ 0.89
RAB39A-201ENST00000320578 LINC00301Q8NCQ3 95 aa20.63■□□□□ 0.89
RAB39A-201ENST00000320578 CCDC17Q96LX7 622 aa20.63■□□□□ 0.89
RAB39A-201ENST00000320578 ZNF277Q9NRM2 450 aaPredicted RBP20.63■□□□□ 0.89
RAB39A-201ENST00000320578 ECM29Q5VYK3 1845 aa20.63■□□□□ 0.89
RAB39A-201ENST00000320578 NFIAQ12857 509 aa20.62■□□□□ 0.89
RAB39A-201ENST00000320578 AGBL3Q8NEM8 1001 aa20.62■□□□□ 0.89
RAB39A-201ENST00000320578 GRPEL1Q9HAV7 217 aa20.62■□□□□ 0.89
RAB39A-201ENST00000320578 HDAC9Q9UKV0 1011 aa20.62■□□□□ 0.89
RAB39A-201ENST00000320578 V9GY48 417 aaPredicted RBP20.62■□□□□ 0.89
RAB39A-201ENST00000320578 RBM5P52756 815 aaKnown RBP eCLIP20.62■□□□□ 0.89
RAB39A-201ENST00000320578 GNL2Q13823 731 aaKnown RBP20.62■□□□□ 0.89
RAB39A-201ENST00000320578 CFAP100Q494V2 611 aa20.62■□□□□ 0.89
RAB39A-201ENST00000320578 METTL16Q86W50 562 aaKnown RBP20.62■□□□□ 0.89
RAB39A-201ENST00000320578 NOSTRINQ8IVI9 506 aa20.62■□□□□ 0.89
RAB39A-201ENST00000320578 NIM1KQ8IY84 436 aa20.62■□□□□ 0.89
RAB39A-201ENST00000320578 CMTR1Q8N1G2 835 aaKnown RBP20.62■□□□□ 0.89
RAB39A-201ENST00000320578 DDX19AQ9NUU7 478 aaKnown RBP20.62■□□□□ 0.89
RAB39A-201ENST00000320578 PI4KBQ9UBF8 816 aa20.62■□□□□ 0.89
RAB39A-201ENST00000320578 FAM198AQ9UFP1 575 aa20.62■□□□□ 0.89
RAB39A-201ENST00000320578 PALM3A6NDB9 673 aaPredicted RBP20.61■□□□□ 0.89
RAB39A-201ENST00000320578 UBE2Q2LH0YL09 131 aa20.61■□□□□ 0.89
RAB39A-201ENST00000320578 R3HDM1Q15032 1099 aaKnown RBP20.61■□□□□ 0.89
RAB39A-201ENST00000320578 ANO1Q5XXA6 986 aa20.61■□□□□ 0.89
RAB39A-201ENST00000320578 FOXP4Q8IVH2 680 aaPredicted RBP20.61■□□□□ 0.89
RAB39A-201ENST00000320578 CCDC82Q8N4S0 544 aa20.61■□□□□ 0.89
RAB39A-201ENST00000320578 MTMR14Q8NCE2 650 aa20.61■□□□□ 0.89
RAB39A-201ENST00000320578 UPF1Q92900 1129 aaKnown RBP eCLIP20.61■□□□□ 0.89
RAB39A-201ENST00000320578 MAD2L2Q9UI95 211 aa20.61■□□□□ 0.89
RAB39A-201ENST00000320578 STX8Q9UNK0 236 aa20.61■□□□□ 0.89
RAB39A-201ENST00000320578 ATRNL1Q5VV63 1379 aa20.61■□□□□ 0.89
RAB39A-201ENST00000320578 A0A1W2PQ27 194 aa20.6■□□□□ 0.89
RAB39A-201ENST00000320578 A0A1W2PQ64 194 aa20.6■□□□□ 0.89
RAB39A-201ENST00000320578 A0A1W2PQD8 194 aa20.6■□□□□ 0.89
RAB39A-201ENST00000320578 SYCE3A1L190 88 aa20.6■□□□□ 0.89
RAB39A-201ENST00000320578 PSMD14O00487 310 aa20.6■□□□□ 0.89
RAB39A-201ENST00000320578 SHMT1P34896 483 aa20.6■□□□□ 0.89
RAB39A-201ENST00000320578 DIS3L2Q8IYB7 885 aaKnown RBP20.6■□□□□ 0.89
RAB39A-201ENST00000320578 CEP95Q96GE4 821 aa20.6■□□□□ 0.89
RAB39A-201ENST00000320578 PHF20Q9BVI0 1012 aa20.6■□□□□ 0.89
RAB39A-201ENST00000320578 SH3GLB2Q9NR46 395 aa20.6■□□□□ 0.89
RAB39A-201ENST00000320578 MTMR4Q9NYA4 1195 aa20.6■□□□□ 0.89
RAB39A-201ENST00000320578 ADAMTSL1Q8N6G6 1762 aa20.6■□□□□ 0.89
RAB39A-201ENST00000320578 LTBP3Q9NS15 1303 aa20.6■□□□□ 0.89
RAB39A-201ENST00000320578 SLC39A14Q15043 492 aa20.6■□□□□ 0.89
RAB39A-201ENST00000320578 PFKFB3Q16875 520 aaPredicted RBP20.6■□□□□ 0.89
RAB39A-201ENST00000320578 ADALQ6DHV7 355 aa20.6■□□□□ 0.89
RAB39A-201ENST00000320578 TAOK3Q9H2K8 898 aa20.6■□□□□ 0.89
RAB39A-201ENST00000320578 MORC2Q9Y6X9 1032 aaPredicted RBP20.6■□□□□ 0.89
RAB39A-201ENST00000320578 XRCC6P12956 609 aaKnown RBP eCLIP20.59■□□□□ 0.89
RAB39A-201ENST00000320578 SCG2P13521 617 aa20.59■□□□□ 0.89
RAB39A-201ENST00000320578 STK38Q15208 465 aa20.59■□□□□ 0.89
RAB39A-201ENST00000320578 CLIC4Q9Y696 253 aa20.59■□□□□ 0.89
RAB39A-201ENST00000320578 COL4A5P29400 1685 aa20.59■□□□□ 0.89
RAB39A-201ENST00000320578 SPTLC2O15270 562 aa20.58■□□□□ 0.89
RAB39A-201ENST00000320578 PPP6R2O75170 966 aa20.58■□□□□ 0.89
RAB39A-201ENST00000320578 CEBPZQ03701 1054 aaKnown RBP20.58■□□□□ 0.89
RAB39A-201ENST00000320578 RILPL1Q5EBL4 403 aa20.58■□□□□ 0.89
RAB39A-201ENST00000320578 OGFOD1Q8N543 542 aa20.58■□□□□ 0.89
RAB39A-201ENST00000320578 BICD2Q8TD16 824 aa20.58■□□□□ 0.89
RAB39A-201ENST00000320578 SPZ1Q9BXG8 430 aa20.58■□□□□ 0.89
RAB39A-201ENST00000320578 FTOQ9C0B1 505 aaKnown RBP eCLIP20.58■□□□□ 0.89
RAB39A-201ENST00000320578 BRCA1P38398 1863 aaKnown RBP20.58■□□□□ 0.89
RAB39A-201ENST00000320578 SPDYE2BA6NHP3 402 aa20.57■□□□□ 0.88
RAB39A-201ENST00000320578 BTBD18B2RXH4 712 aa20.57■□□□□ 0.88
RAB39A-201ENST00000320578 SPDYE6P0CI01 402 aa20.57■□□□□ 0.88
Retrieved 100 of 20,778 RNA–protein pairs in 39.4 ms