RNA–Protein interactions for RNA: ENST00000298281.8

PCF11-201, Transcript of PCF11, cleavage and polyadenylation factor subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PCF11, Length 7,677 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCF11-201ENST00000298281 KIF22Q14807 665 aa13.31□□□□□ -0.28
PCF11-201ENST00000298281 HHATQ5VTY9 493 aa13.31□□□□□ -0.28
PCF11-201ENST00000298281 TNFAIP3P21580 790 aa13.31□□□□□ -0.28
PCF11-201ENST00000298281 ARHGAP30Q7Z6I6 1101 aaPredicted RBP13.31□□□□□ -0.28
PCF11-201ENST00000298281 RNF10Q8N5U6 811 aaKnown RBP13.31□□□□□ -0.28
PCF11-201ENST00000298281 TCEANC2Q96MN5 208 aa13.31□□□□□ -0.28
PCF11-201ENST00000298281 BCAP29Q9UHQ4 241 aa13.31□□□□□ -0.28
PCF11-201ENST00000298281 TTF2Q9UNY4 1162 aaKnown RBP13.31□□□□□ -0.28
PCF11-201ENST00000298281 UHRF1BP1LA0JNW5 1464 aa13.31□□□□□ -0.28
PCF11-201ENST00000298281 LRRC23Q53EV4 343 aaPredicted RBP13.31□□□□□ -0.28
PCF11-201ENST00000298281 METTL13Q8N6R0 699 aa13.31□□□□□ -0.28
PCF11-201ENST00000298281 ARHGEF1Q92888 912 aaKnown RBP13.31□□□□□ -0.28
PCF11-201ENST00000298281 KDM5BQ9UGL1 1544 aa13.31□□□□□ -0.28
PCF11-201ENST00000298281 PARP10Q53GL7 1025 aa13.31□□□□□ -0.28
PCF11-201ENST00000298281 RNF168Q8IYW5 571 aaPredicted RBP13.31□□□□□ -0.28
PCF11-201ENST00000298281 RBM17Q96I25 401 aaKnown RBP13.31□□□□□ -0.28
PCF11-201ENST00000298281 EFCC1Q9HA90 598 aa13.31□□□□□ -0.28
PCF11-201ENST00000298281 LZTFL1Q9NQ48 299 aa13.31□□□□□ -0.28
PCF11-201ENST00000298281 SUCLA2Q9P2R7 463 aaPredicted RBP13.31□□□□□ -0.28
PCF11-201ENST00000298281 TYW5A2RUC4 315 aaKnown RBP13.31□□□□□ -0.28
PCF11-201ENST00000298281 MYCLP12524 364 aaPredicted RBP13.31□□□□□ -0.28
PCF11-201ENST00000298281 TBC1D8BQ0IIM8 1120 aa13.31□□□□□ -0.28
PCF11-201ENST00000298281 PRPF38AQ8NAV1 312 aaKnown RBP13.31□□□□□ -0.28
PCF11-201ENST00000298281 JARID2Q92833 1246 aaPredicted RBP13.31□□□□□ -0.28
PCF11-201ENST00000298281 PPIP5K1Q6PFW1 1433 aa13.31□□□□□ -0.28
PCF11-201ENST00000298281 CCDC38Q502W7 563 aa13.3□□□□□ -0.28
PCF11-201ENST00000298281 SZRD1Q7Z422 152 aa13.3□□□□□ -0.28
PCF11-201ENST00000298281 NOC4LQ9BVI4 516 aaKnown RBP13.3□□□□□ -0.28
PCF11-201ENST00000298281 CDCA7Q9BWT1 371 aaPredicted RBP13.3□□□□□ -0.28
PCF11-201ENST00000298281 RBSNQ9H1K0 784 aa13.3□□□□□ -0.28
PCF11-201ENST00000298281 LAMC3Q9Y6N6 1575 aa13.3□□□□□ -0.28
PCF11-201ENST00000298281 GNGT2O14610 69 aa13.3□□□□□ -0.28
PCF11-201ENST00000298281 KRT81Q14533 505 aa13.3□□□□□ -0.28
PCF11-201ENST00000298281 IQCDQ96DY2 449 aa13.3□□□□□ -0.28
PCF11-201ENST00000298281 ANGPTL3Q9Y5C1 460 aa13.3□□□□□ -0.28
PCF11-201ENST00000298281 SYNDIG1LA6NDD5 238 aa13.3□□□□□ -0.28
PCF11-201ENST00000298281 C1orf228Q6PIY5 440 aa13.3□□□□□ -0.28
PCF11-201ENST00000298281 ZC3H8Q8N5P1 291 aaKnown RBP eCLIP13.3□□□□□ -0.28
PCF11-201ENST00000298281 PLIN2Q99541 437 aa13.3□□□□□ -0.28
PCF11-201ENST00000298281 LZTS2Q9BRK4 669 aa13.3□□□□□ -0.28
PCF11-201ENST00000298281 RHOXF2BP0C7M4 288 aa13.3□□□□□ -0.28
PCF11-201ENST00000298281 AK2P54819 239 aa13.3□□□□□ -0.28
PCF11-201ENST00000298281 CCDC93Q567U6 631 aa13.3□□□□□ -0.28
PCF11-201ENST00000298281 RHOXF2Q9BQY4 288 aa13.3□□□□□ -0.28
PCF11-201ENST00000298281 EIF2AQ9BY44 585 aaKnown RBP13.3□□□□□ -0.28
PCF11-201ENST00000298281 ZFYVE9O95405 1425 aa13.3□□□□□ -0.28
PCF11-201ENST00000298281 TCIRG1Q13488 830 aa13.3□□□□□ -0.28
PCF11-201ENST00000298281 BABAM1Q9NWV8 329 aa13.3□□□□□ -0.28
PCF11-201ENST00000298281 IPO11Q9UI26 975 aaKnown RBP13.3□□□□□ -0.28
PCF11-201ENST00000298281 MAP3K5Q99683 1374 aa13.3□□□□□ -0.28
PCF11-201ENST00000298281 DNM2P50570 870 aa13.3□□□□□ -0.28
PCF11-201ENST00000298281 FGD4Q96M96 766 aa13.3□□□□□ -0.28
PCF11-201ENST00000298281 APOBRQ0VD83 1088 aa13.29□□□□□ -0.28
PCF11-201ENST00000298281 TMEM259Q4ZIN3 620 aa13.29□□□□□ -0.28
PCF11-201ENST00000298281 BAG2O95816 211 aa13.29□□□□□ -0.28
PCF11-201ENST00000298281 STX17P56962 302 aa13.29□□□□□ -0.28
PCF11-201ENST00000298281 IQCB1Q15051 598 aa13.29□□□□□ -0.28
PCF11-201ENST00000298281 CYP26C1Q6V0L0 522 aa13.29□□□□□ -0.28
PCF11-201ENST00000298281 RUFY4Q6ZNE9 571 aa13.29□□□□□ -0.28
PCF11-201ENST00000298281 CDV3Q9UKY7 258 aaKnown RBP13.29□□□□□ -0.28
PCF11-201ENST00000298281 ARHGAP42A6NI28 874 aa13.29□□□□□ -0.28
PCF11-201ENST00000298281 ARHGAP4P98171 946 aa13.29□□□□□ -0.28
PCF11-201ENST00000298281 BRD3Q15059 726 aa13.29□□□□□ -0.28
PCF11-201ENST00000298281 SMC5Q8IY18 1101 aa13.29□□□□□ -0.28
PCF11-201ENST00000298281 ACSBG1Q96GR2 724 aa13.29□□□□□ -0.28
PCF11-201ENST00000298281 PGBD1Q96JS3 809 aa13.29□□□□□ -0.28
PCF11-201ENST00000298281 TFCP2L1Q9NZI6 479 aa13.29□□□□□ -0.28
PCF11-201ENST00000298281 EIF2AK4Q9P2K8 1649 aaKnown RBP13.29□□□□□ -0.28
PCF11-201ENST00000298281 DDX39AO00148 427 aaKnown RBP13.29□□□□□ -0.28
PCF11-201ENST00000298281 IRX4P78413 519 aa13.29□□□□□ -0.28
PCF11-201ENST00000298281 TEX11Q8IYF3 940 aa13.29□□□□□ -0.28
PCF11-201ENST00000298281 GTPBP10A4D1E9 387 aaKnown RBP13.29□□□□□ -0.28
PCF11-201ENST00000298281 VWA3AA6NCI4 1184 aa13.29□□□□□ -0.28
PCF11-201ENST00000298281 ZBTB17Q13105 803 aa13.28□□□□□ -0.28
PCF11-201ENST00000298281 PCDH11XQ9BZA7 1347 aa13.28□□□□□ -0.28
PCF11-201ENST00000298281 PCDH11YQ9BZA8 1340 aa13.28□□□□□ -0.28
PCF11-201ENST00000298281 GOLGA8CPA6NN73 597 aa13.28□□□□□ -0.28
PCF11-201ENST00000298281 SLC4A1P02730 911 aa13.28□□□□□ -0.28
PCF11-201ENST00000298281 IFT20Q8IY31 132 aa13.28□□□□□ -0.28
PCF11-201ENST00000298281 RSAD2Q8WXG1 361 aa13.28□□□□□ -0.28
PCF11-201ENST00000298281 ZFYVE1Q9HBF4 777 aa13.28□□□□□ -0.28
PCF11-201ENST00000298281 SBNO2Q9Y2G9 1366 aa13.28□□□□□ -0.28
PCF11-201ENST00000298281 CCDC124Q96CT7 223 aaKnown RBP13.28□□□□□ -0.28
PCF11-201ENST00000298281 LRGUKQ96M69 825 aa13.28□□□□□ -0.28
PCF11-201ENST00000298281 DDX21Q9NR30 783 aaKnown RBP eCLIP13.28□□□□□ -0.28
PCF11-201ENST00000298281 TSKSQ9UJT2 592 aa13.28□□□□□ -0.28
PCF11-201ENST00000298281 PRKG1Q13976 671 aa13.28□□□□□ -0.28
PCF11-201ENST00000298281 NONOQ15233 471 aaKnown RBP eCLIP13.28□□□□□ -0.28
PCF11-201ENST00000298281 LETM2Q2VYF4 491 aa13.28□□□□□ -0.28
PCF11-201ENST00000298281 MYSM1Q5VVJ2 828 aa13.28□□□□□ -0.28
PCF11-201ENST00000298281 MAIP1Q8WWC4 291 aa13.28□□□□□ -0.28
PCF11-201ENST00000298281 STK38LQ9Y2H1 464 aa13.28□□□□□ -0.28
PCF11-201ENST00000298281 MAP3K7O43318 606 aa13.28□□□□□ -0.28
PCF11-201ENST00000298281 IRX3P78415 501 aaPredicted RBP13.28□□□□□ -0.28
PCF11-201ENST00000298281 SLC39A6Q13433 755 aa13.28□□□□□ -0.28
PCF11-201ENST00000298281 KARSQ15046 597 aaKnown RBP13.28□□□□□ -0.28
PCF11-201ENST00000298281 PNMA8AQ86V59 439 aaPredicted RBP13.28□□□□□ -0.28
PCF11-201ENST00000298281 LZICQ8WZA0 190 aa13.28□□□□□ -0.28
PCF11-201ENST00000298281 GBP5Q96PP8 586 aa13.28□□□□□ -0.28
PCF11-201ENST00000298281 SLC9C1Q4G0N8 1177 aa13.28□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 15.8 ms