RNA–Protein interactions for RNA: ENST00000254351.8

SDC1-201, Transcript of syndecan 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SDC1, Length 3,147 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-201ENST00000254351 IFIT3O14879 490 aaKnown RBP16.23■□□□□ 0.19
SDC1-201ENST00000254351 TDO2P48775 406 aa16.23■□□□□ 0.19
SDC1-201ENST00000254351 DPYDQ12882 1025 aa16.23■□□□□ 0.19
SDC1-201ENST00000254351 RASGRP2Q7LDG7 609 aa16.23■□□□□ 0.19
SDC1-201ENST00000254351 JPH2Q9BR39 696 aaPredicted RBP16.23■□□□□ 0.19
SDC1-201ENST00000254351 NBPF3Q9H094 633 aa16.23■□□□□ 0.19
SDC1-201ENST00000254351 MYO1FO00160 1098 aa16.23■□□□□ 0.19
SDC1-201ENST00000254351 ERCC3P19447 782 aa16.23■□□□□ 0.19
SDC1-201ENST00000254351 GNGT1P63211 74 aa16.23■□□□□ 0.19
SDC1-201ENST00000254351 SAFBQ15424 915 aaKnown RBP eCLIP16.23■□□□□ 0.19
SDC1-201ENST00000254351 CCDC122Q5T0U0 273 aa16.23■□□□□ 0.19
SDC1-201ENST00000254351 MMS22LQ6ZRQ5 1243 aa16.23■□□□□ 0.19
SDC1-201ENST00000254351 EFCAB13Q8IY85 973 aa16.23■□□□□ 0.19
SDC1-201ENST00000254351 FAM76AQ8TAV0 307 aa16.23■□□□□ 0.19
SDC1-201ENST00000254351 DDX17Q92841 729 aaKnown RBP16.23■□□□□ 0.19
SDC1-201ENST00000254351 XAGE2Q96GT9 111 aa16.23■□□□□ 0.19
SDC1-201ENST00000254351 SLC12A7Q9Y666 1083 aa16.23■□□□□ 0.19
SDC1-201ENST00000254351 ALS2Q96Q42 1657 aa16.22■□□□□ 0.19
SDC1-201ENST00000254351 PRDM1O75626 825 aa16.22■□□□□ 0.19
SDC1-201ENST00000254351 CXCR5P32302 372 aa16.22■□□□□ 0.19
SDC1-201ENST00000254351 SSRP1Q08945 709 aaKnown RBP16.22■□□□□ 0.19
SDC1-201ENST00000254351 SND1Q7KZF4 910 aaKnown RBP eCLIP16.22■□□□□ 0.192e-8■■■□□ 15
SDC1-201ENST00000254351 HDAC7Q8WUI4 952 aa16.22■□□□□ 0.19
SDC1-201ENST00000254351 WWC3Q9ULE0 1092 aa16.22■□□□□ 0.19
SDC1-201ENST00000254351 ZMYM6O95789 1325 aa16.22■□□□□ 0.19
SDC1-201ENST00000254351 ZPR1O75312 459 aa16.22■□□□□ 0.19
SDC1-201ENST00000254351 ARHGAP25P42331 645 aa16.22■□□□□ 0.19
SDC1-201ENST00000254351 CYP27A1Q02318 531 aa16.22■□□□□ 0.19
SDC1-201ENST00000254351 SF3A3Q12874 501 aaKnown RBP eCLIP16.22■□□□□ 0.19
SDC1-201ENST00000254351 MAP9Q49MG5 647 aa16.22■□□□□ 0.19
SDC1-201ENST00000254351 MED4Q9NPJ6 270 aa16.22■□□□□ 0.19
SDC1-201ENST00000254351 ADD3Q9UEY8 706 aaKnown RBP16.22■□□□□ 0.19
SDC1-201ENST00000254351 CAPN7Q9Y6W3 813 aa16.22■□□□□ 0.19
SDC1-201ENST00000254351 UBXN1Q04323 297 aa16.21■□□□□ 0.19
SDC1-201ENST00000254351 RRAGBQ5VZM2 374 aa16.21■□□□□ 0.19
SDC1-201ENST00000254351 SH2D3CQ8N5H7 860 aa16.21■□□□□ 0.19
SDC1-201ENST00000254351 SMCR8Q8TEV9 937 aaPredicted RBP16.21■□□□□ 0.19
SDC1-201ENST00000254351 AIDAQ96BJ3 306 aa16.21■□□□□ 0.19
SDC1-201ENST00000254351 SELENOOQ9BVL4 669 aa16.21■□□□□ 0.19
SDC1-201ENST00000254351 ABHD10Q9NUJ1 306 aa16.21■□□□□ 0.19
SDC1-201ENST00000254351 VPS54Q9P1Q0 977 aa16.21■□□□□ 0.19
SDC1-201ENST00000254351 FBXO2Q9UK22 296 aaPredicted RBP16.21■□□□□ 0.19
SDC1-201ENST00000254351 GOLGA6BA6NDN3 693 aa16.21■□□□□ 0.19
SDC1-201ENST00000254351 MYCNP04198 464 aaPredicted RBP16.21■□□□□ 0.19
SDC1-201ENST00000254351 HNRNPH1P31943 449 aaKnown RBP16.21■□□□□ 0.19
SDC1-201ENST00000254351 MCTP2Q6DN12 878 aa16.21■□□□□ 0.19
SDC1-201ENST00000254351 EHD2Q9NZN4 543 aa16.21■□□□□ 0.19
SDC1-201ENST00000254351 CDHR2Q9BYE9 1310 aa16.21■□□□□ 0.18
SDC1-201ENST00000254351 NFAT5O94916 1531 aa16.21■□□□□ 0.18
SDC1-201ENST00000254351 IRAK1P51617 712 aa16.21■□□□□ 0.18
SDC1-201ENST00000254351 FOXO4P98177 505 aa16.21■□□□□ 0.18
SDC1-201ENST00000254351 KRT31Q15323 416 aa16.21■□□□□ 0.18
SDC1-201ENST00000254351 WHAMMP3Q1A5X7 153 aa16.21■□□□□ 0.18
SDC1-201ENST00000254351 AMOTQ4VCS5 1084 aa16.21■□□□□ 0.18
SDC1-201ENST00000254351 CT47A1Q5JQC4 288 aaPredicted RBP16.21■□□□□ 0.18
SDC1-201ENST00000254351 APTXQ7Z2E3 356 aaKnown RBP16.21■□□□□ 0.18
SDC1-201ENST00000254351 KIAA1328Q86T90 577 aa16.21■□□□□ 0.18
SDC1-201ENST00000254351 KCNH5Q8NCM2 988 aa16.21■□□□□ 0.18
SDC1-201ENST00000254351 PLIN2Q99541 437 aa16.21■□□□□ 0.18
SDC1-201ENST00000254351 TTF2Q9UNY4 1162 aaKnown RBP16.21■□□□□ 0.18
SDC1-201ENST00000254351 SLIT3O75094 1523 aa16.2■□□□□ 0.18
SDC1-201ENST00000254351 A0A087WUV0 522 aaPredicted RBP16.2■□□□□ 0.18
SDC1-201ENST00000254351 CDKL5O76039 1030 aa16.2■□□□□ 0.18
SDC1-201ENST00000254351 PDCLQ13371 301 aa16.2■□□□□ 0.18
SDC1-201ENST00000254351 CNGA4Q8IV77 575 aa16.2■□□□□ 0.18
SDC1-201ENST00000254351 EYA2O00167 538 aa16.2■□□□□ 0.18
SDC1-201ENST00000254351 PRPF6O94906 941 aaKnown RBP16.2■□□□□ 0.18
SDC1-201ENST00000254351 MAP2K2P36507 400 aa16.2■□□□□ 0.18
SDC1-201ENST00000254351 ZNF174Q15697 407 aa16.2■□□□□ 0.18
SDC1-201ENST00000254351 SPATA1Q5VX52 437 aa16.2■□□□□ 0.18
SDC1-201ENST00000254351 PCMTD1Q96MG8 357 aaPredicted RBP16.2■□□□□ 0.18
SDC1-201ENST00000254351 TNS3Q68CZ2 1445 aa16.2■□□□□ 0.18
SDC1-201ENST00000254351 LAMA4Q16363 1823 aa16.2■□□□□ 0.18
SDC1-201ENST00000254351 LRRC37A3O60309 1634 aa16.2■□□□□ 0.18
SDC1-201ENST00000254351 ACTN4O43707 911 aaKnown RBP16.19■□□□□ 0.18
SDC1-201ENST00000254351 SSBP05455 408 aaKnown RBP eCLIP16.19■□□□□ 0.18
SDC1-201ENST00000254351 INPP5BP32019 993 aa16.19■□□□□ 0.18
SDC1-201ENST00000254351 SYNE4Q8N205 404 aa16.19■□□□□ 0.18
SDC1-201ENST00000254351 ANKRD20A12PQ8NF67 263 aa16.19■□□□□ 0.18
SDC1-201ENST00000254351 BRMS1Q9HCU9 246 aa16.19■□□□□ 0.18
SDC1-201ENST00000254351 SAR1BQ9Y6B6 198 aa16.19■□□□□ 0.18
SDC1-201ENST00000254351 TRIM49BA6NDI0 452 aa16.19■□□□□ 0.18
SDC1-201ENST00000254351 IL15P40933 162 aaPredicted RBP16.19■□□□□ 0.18
SDC1-201ENST00000254351 USP14P54578 494 aa16.19■□□□□ 0.18
SDC1-201ENST00000254351 RNF187Q5TA31 235 aaPredicted RBP16.19■□□□□ 0.18
SDC1-201ENST00000254351 COG1Q8WTW3 980 aa16.19■□□□□ 0.18
SDC1-201ENST00000254351 JAKMIP2Q96AA8 810 aa16.19■□□□□ 0.18
SDC1-201ENST00000254351 EPN1Q9Y6I3 576 aaPredicted RBP16.19■□□□□ 0.18
SDC1-201ENST00000254351 PDE2AO00408 941 aaPredicted RBP16.19■□□□□ 0.18
SDC1-201ENST00000254351 WNT7AO00755 349 aa16.19■□□□□ 0.18
SDC1-201ENST00000254351 SH2B2O14492 632 aaPredicted RBP16.19■□□□□ 0.18
SDC1-201ENST00000254351 SYMPKQ92797 1274 aaKnown RBP16.19■□□□□ 0.18
SDC1-201ENST00000254351 CAPS2Q9BXY5 557 aa16.19■□□□□ 0.18
SDC1-201ENST00000254351 CXorf56Q9H5V9 222 aa16.19■□□□□ 0.18
SDC1-201ENST00000254351 YY1AP1Q9H869 796 aa16.19■□□□□ 0.18
SDC1-201ENST00000254351 AGPSO00116 658 aa16.18■□□□□ 0.18
SDC1-201ENST00000254351 RABL6Q3YEC7 729 aaPredicted RBP16.18■□□□□ 0.18
SDC1-201ENST00000254351 EARS2Q5JPH6 523 aaKnown RBP16.18■□□□□ 0.18
SDC1-201ENST00000254351 FAM217BQ9NTX9 383 aaPredicted RBP16.18■□□□□ 0.18
SDC1-201ENST00000254351 REXO2Q9Y3B8 237 aaKnown RBP16.18■□□□□ 0.18
Retrieved 100 of 20,778 RNA–protein pairs in 34 ms