RNA–Protein interactions for RNA: ENST00000600840.1

TRIM28-214, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 338 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-214ENST00000600840 ZCCHC17Q9NP64 241 aaKnown RBP10.62□□□□□ -0.71
TRIM28-214ENST00000600840 RAI14Q9P0K7 980 aa10.62□□□□□ -0.71
TRIM28-214ENST00000600840 AFG3L2Q9Y4W6 797 aa10.62□□□□□ -0.71
TRIM28-214ENST00000600840 NDUFB9Q9Y6M9 179 aa10.62□□□□□ -0.71
TRIM28-214ENST00000600840 ZHX2Q9Y6X8 837 aa10.62□□□□□ -0.71
TRIM28-214ENST00000600840 ATAD5Q96QE3 1844 aa10.62□□□□□ -0.71
TRIM28-214ENST00000600840 ELNP15502 786 aa10.61□□□□□ -0.71
TRIM28-214ENST00000600840 SYN1P17600 705 aa10.61□□□□□ -0.71
TRIM28-214ENST00000600840 UBXN2AP68543 259 aa10.61□□□□□ -0.71
TRIM28-214ENST00000600840 JAG1P78504 1218 aa10.61□□□□□ -0.71
TRIM28-214ENST00000600840 TTC39AQ5SRH9 613 aa10.61□□□□□ -0.71
TRIM28-214ENST00000600840 PHF6Q8IWS0 365 aaKnown RBP eCLIP10.61□□□□□ -0.71
TRIM28-214ENST00000600840 C7orf61Q8IZ16 206 aa10.61□□□□□ -0.71
TRIM28-214ENST00000600840 SH3RF3Q8TEJ3 882 aaPredicted RBP10.61□□□□□ -0.71
TRIM28-214ENST00000600840 DIS3LQ8TF46 1054 aaKnown RBP10.61□□□□□ -0.71
TRIM28-214ENST00000600840 EDC3Q96F86 508 aaKnown RBP10.61□□□□□ -0.71
TRIM28-214ENST00000600840 BOLA2Q9H3K6 86 aa10.61□□□□□ -0.71
TRIM28-214ENST00000600840 PIH1D3Q9NQM4 214 aaKnown RBP10.61□□□□□ -0.71
TRIM28-214ENST00000600840 A0A0G2JLL6 359 aaPredicted RBP10.6□□□□□ -0.71
TRIM28-214ENST00000600840 CXCL11O14625 94 aa10.6□□□□□ -0.71
TRIM28-214ENST00000600840 GLRX3O76003 335 aaKnown RBP10.6□□□□□ -0.71
TRIM28-214ENST00000600840 GSPT1P15170 499 aaKnown RBP10.6□□□□□ -0.71
TRIM28-214ENST00000600840 HOXD10P28358 340 aa10.6□□□□□ -0.71
TRIM28-214ENST00000600840 SHROOM1Q2M3G4 852 aaPredicted RBP10.6□□□□□ -0.71
TRIM28-214ENST00000600840 PRRT2Q7Z6L0 340 aaPredicted RBP10.6□□□□□ -0.71
TRIM28-214ENST00000600840 SLF2Q8IX21 1173 aa10.6□□□□□ -0.71
TRIM28-214ENST00000600840 PAWRQ96IZ0 340 aaKnown RBP10.6□□□□□ -0.71
TRIM28-214ENST00000600840 DEFB118Q96PH6 123 aa10.6□□□□□ -0.71
TRIM28-214ENST00000600840 OSBPL5Q9H0X9 879 aaPredicted RBP10.6□□□□□ -0.71
TRIM28-214ENST00000600840 AATFQ9NY61 560 aaKnown RBP eCLIP10.6□□□□□ -0.71
TRIM28-214ENST00000600840 LRP2BPQ9P2M1 347 aa10.6□□□□□ -0.71
TRIM28-214ENST00000600840 FOCADQ5VW36 1801 aa10.6□□□□□ -0.71
TRIM28-214ENST00000600840 DOCK3Q8IZD9 2030 aa10.6□□□□□ -0.71
TRIM28-214ENST00000600840 MAST2Q6P0Q8 1798 aa10.6□□□□□ -0.71
TRIM28-214ENST00000600840 CUL9Q8IWT3 2517 aa10.59□□□□□ -0.71
TRIM28-214ENST00000600840 DDX60LQ5H9U9 1706 aaKnown RBP10.59□□□□□ -0.71
TRIM28-214ENST00000600840 TRIM75PA6NK02 468 aa10.59□□□□□ -0.71
TRIM28-214ENST00000600840 TBC1D12O60347 775 aa10.59□□□□□ -0.71
TRIM28-214ENST00000600840 CTNND1O60716 968 aaKnown RBP10.59□□□□□ -0.71
TRIM28-214ENST00000600840 NPM3O75607 178 aaKnown RBP10.59□□□□□ -0.71
TRIM28-214ENST00000600840 TFRCP02786 760 aaKnown RBP10.59□□□□□ -0.71
TRIM28-214ENST00000600840 INHAP05111 366 aa10.59□□□□□ -0.71
TRIM28-214ENST00000600840 LDHCP07864 332 aa10.59□□□□□ -0.71
TRIM28-214ENST00000600840 BCRP11274 1271 aa10.59□□□□□ -0.71
TRIM28-214ENST00000600840 BMP8BP34820 402 aa10.59□□□□□ -0.71
TRIM28-214ENST00000600840 DYNLL1P63167 89 aaKnown RBP10.59□□□□□ -0.71
TRIM28-214ENST00000600840 GPR153Q6NV75 609 aa10.59□□□□□ -0.71
TRIM28-214ENST00000600840 GADL1Q6ZQY3 521 aa10.59□□□□□ -0.71
TRIM28-214ENST00000600840 XPO5Q9HAV4 1204 aaKnown RBP eCLIP10.59□□□□□ -0.71
TRIM28-214ENST00000600840 PICK1Q9NRD5 415 aa10.59□□□□□ -0.71
TRIM28-214ENST00000600840 ADCY3O60266 1144 aa10.58□□□□□ -0.72
TRIM28-214ENST00000600840 IGSF3O75054 1194 aa10.58□□□□□ -0.72
TRIM28-214ENST00000600840 GSTO1P78417 241 aa10.58□□□□□ -0.72
TRIM28-214ENST00000600840 TREML2Q5T2D2 321 aa10.58□□□□□ -0.72
TRIM28-214ENST00000600840 TTC22Q5TAA0 569 aa10.58□□□□□ -0.72
TRIM28-214ENST00000600840 NAA16Q6N069 864 aaPredicted RBP10.58□□□□□ -0.72
TRIM28-214ENST00000600840 TEX11Q8IYF3 940 aa10.58□□□□□ -0.72
TRIM28-214ENST00000600840 SLAIN1Q8ND83 568 aa10.58□□□□□ -0.72
TRIM28-214ENST00000600840 TGFBRAP1Q8WUH2 860 aa10.58□□□□□ -0.72
TRIM28-214ENST00000600840 BCL11AQ9H165 835 aa10.58□□□□□ -0.72
TRIM28-214ENST00000600840 DNAJC18Q9H819 358 aa10.58□□□□□ -0.72
TRIM28-214ENST00000600840 ZBTB47Q9UFB7 747 aaPredicted RBP10.58□□□□□ -0.72
TRIM28-214ENST00000600840 COL2A1P02458 1487 aaPredicted RBP10.57□□□□□ -0.72
TRIM28-214ENST00000600840 TCRBV5S4A2TA0A5A2 114 aa10.57□□□□□ -0.72
TRIM28-214ENST00000600840 ERC2O15083 957 aa10.57□□□□□ -0.72
TRIM28-214ENST00000600840 CHGBP05060 677 aa10.57□□□□□ -0.72
TRIM28-214ENST00000600840 CAP2P40123 477 aa10.57□□□□□ -0.72
TRIM28-214ENST00000600840 MAGEA10P43363 369 aaPredicted RBP10.57□□□□□ -0.72
TRIM28-214ENST00000600840 FLT3LGP49771 235 aa10.57□□□□□ -0.72
TRIM28-214ENST00000600840 FCGRTP55899 365 aa10.57□□□□□ -0.72
TRIM28-214ENST00000600840 PPP4CP60510 307 aa10.57□□□□□ -0.72
TRIM28-214ENST00000600840 SPP2Q13103 211 aa10.57□□□□□ -0.72
TRIM28-214ENST00000600840 LRIT3Q3SXY7 679 aa10.57□□□□□ -0.72
TRIM28-214ENST00000600840 MAPKAPK5Q8IW41 473 aa10.57□□□□□ -0.72
TRIM28-214ENST00000600840 GPATCH3Q96I76 525 aa10.57□□□□□ -0.72
TRIM28-214ENST00000600840 PAG1Q9NWQ8 432 aa10.57□□□□□ -0.72
TRIM28-214ENST00000600840 PALD1Q9ULE6 856 aa10.57□□□□□ -0.72
TRIM28-214ENST00000600840 LAMA3Q16787 3333 aa10.57□□□□□ -0.72
TRIM28-214ENST00000600840 LOC285556D6RIA3 1793 aa10.57□□□□□ -0.72
TRIM28-214ENST00000600840 GOLIM4O00461 696 aa10.56□□□□□ -0.72
TRIM28-214ENST00000600840 PEX10O60683 326 aa10.56□□□□□ -0.72
TRIM28-214ENST00000600840 MAP4K4O95819 1239 aaPredicted RBP10.56□□□□□ -0.72
TRIM28-214ENST00000600840 SDSP20132 328 aa10.56□□□□□ -0.72
TRIM28-214ENST00000600840 FASTKD5Q7L8L6 764 aaKnown RBP10.56□□□□□ -0.72
TRIM28-214ENST00000600840 TICAM2Q86XR7 235 aa10.56□□□□□ -0.72
TRIM28-214ENST00000600840 TDHQ8IZJ6 230 aa10.56□□□□□ -0.72
TRIM28-214ENST00000600840 KBTBD3Q8NAB2 608 aa10.56□□□□□ -0.72
TRIM28-214ENST00000600840 FAM161BQ96MY7 647 aa10.56□□□□□ -0.72
TRIM28-214ENST00000600840 GUCD1Q96NT3 240 aa10.56□□□□□ -0.72
TRIM28-214ENST00000600840 PARK7Q99497 189 aaKnown RBP10.56□□□□□ -0.72
TRIM28-214ENST00000600840 CRISPLD2Q9H0B8 497 aa10.56□□□□□ -0.72
TRIM28-214ENST00000600840 PAK6Q9NQU5 681 aaPredicted RBP10.56□□□□□ -0.72
TRIM28-214ENST00000600840 SAP30BPQ9UHR5 308 aaKnown RBP10.56□□□□□ -0.72
TRIM28-214ENST00000600840 TAOK2Q9UL54 1235 aa10.56□□□□□ -0.72
TRIM28-214ENST00000600840 MYH1P12882 1939 aa10.56□□□□□ -0.72
TRIM28-214ENST00000600840 FLT1P17948 1338 aa10.56□□□□□ -0.72
TRIM28-214ENST00000600840 RPTORQ8N122 1335 aa10.56□□□□□ -0.72
TRIM28-214ENST00000600840 CYP7A1P22680 504 aa10.55□□□□□ -0.72
TRIM28-214ENST00000600840 HMGCS2P54868 508 aa10.55□□□□□ -0.72
TRIM28-214ENST00000600840 EVX2Q03828 476 aa10.55□□□□□ -0.72
Retrieved 100 of 20,778 RNA–protein pairs in 50 ms