RNA–Protein interactions for RNA: ENST00000595974.5

TRIM28-206, Transcript of tripartite motif containing 28, humanhuman

TSL 3

Gene TRIM28, Length 665 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-206ENST00000595974 PLCD1P51178 756 aa19.51■□□□□ 0.71
TRIM28-206ENST00000595974 SPP2Q13103 211 aa19.51■□□□□ 0.71
TRIM28-206ENST00000595974 PROCA1Q8NCQ7 364 aaPredicted RBP19.51■□□□□ 0.71
TRIM28-206ENST00000595974 DDRGK1Q96HY6 314 aa19.51■□□□□ 0.71
TRIM28-206ENST00000595974 WDR18Q9BV38 432 aa19.51■□□□□ 0.71
TRIM28-206ENST00000595974 PUS7LQ9H0K6 701 aaKnown RBP19.51■□□□□ 0.71
TRIM28-206ENST00000595974 STAP2Q9UGK3 403 aa19.51■□□□□ 0.71
TRIM28-206ENST00000595974 ADGRA2Q96PE1 1338 aa19.51■□□□□ 0.71
TRIM28-206ENST00000595974 RNF113AO15541 343 aaKnown RBP19.5■□□□□ 0.71
TRIM28-206ENST00000595974 PRKAB2O43741 272 aa19.5■□□□□ 0.71
TRIM28-206ENST00000595974 GABPAQ06546 454 aa19.5■□□□□ 0.71
TRIM28-206ENST00000595974 CD99L2Q8TCZ2 262 aa19.5■□□□□ 0.71
TRIM28-206ENST00000595974 AGTPBP1Q9UPW5 1226 aa19.5■□□□□ 0.71
TRIM28-206ENST00000595974 ZSWIM8A7E2V4 1837 aa19.5■□□□□ 0.71
TRIM28-206ENST00000595974 MGAMO43451 1857 aa19.5■□□□□ 0.71
TRIM28-206ENST00000595974 PDE1AP54750 535 aa19.49■□□□□ 0.71
TRIM28-206ENST00000595974 JAG1P78504 1218 aa19.49■□□□□ 0.71
TRIM28-206ENST00000595974 FBXO46Q6PJ61 603 aaPredicted RBP19.49■□□□□ 0.71
TRIM28-206ENST00000595974 OTOP1Q7RTM1 612 aa19.49■□□□□ 0.71
TRIM28-206ENST00000595974 AMOTL1Q8IY63 956 aa19.49■□□□□ 0.71
TRIM28-206ENST00000595974 FSD1Q9BTV5 496 aa19.49■□□□□ 0.71
TRIM28-206ENST00000595974 TRIM17Q9Y577 477 aa19.49■□□□□ 0.71
TRIM28-206ENST00000595974 SLC4A4Q9Y6R1 1079 aa19.49■□□□□ 0.71
TRIM28-206ENST00000595974 HTTP42858 3142 aa19.48■□□□□ 0.71
TRIM28-206ENST00000595974 GH2P01242 217 aa19.48■□□□□ 0.71
TRIM28-206ENST00000595974 IGHDP01880 384 aa19.48■□□□□ 0.71
TRIM28-206ENST00000595974 SHMT1P34896 483 aa19.48■□□□□ 0.71
TRIM28-206ENST00000595974 ARHGEF6Q15052 776 aa19.48■□□□□ 0.71
TRIM28-206ENST00000595974 CERKLQ49MI3 558 aaPredicted RBP19.48■□□□□ 0.71
TRIM28-206ENST00000595974 SH3D19Q5HYK7 790 aa19.48■□□□□ 0.71
TRIM28-206ENST00000595974 C17orf99Q6UX52 265 aa19.48■□□□□ 0.71
TRIM28-206ENST00000595974 OSBP2Q969R2 916 aa19.48■□□□□ 0.71
TRIM28-206ENST00000595974 LNPKQ9C0E8 428 aa19.48■□□□□ 0.71
TRIM28-206ENST00000595974 SWAP70Q9UH65 585 aa19.48■□□□□ 0.71
TRIM28-206ENST00000595974 HMGCS2P54868 508 aa19.47■□□□□ 0.71
TRIM28-206ENST00000595974 SHROOM1Q2M3G4 852 aaPredicted RBP19.47■□□□□ 0.71
TRIM28-206ENST00000595974 STRBPQ96SI9 672 aaKnown RBP19.47■□□□□ 0.71
TRIM28-206ENST00000595974 EFCC1Q9HA90 598 aa19.47■□□□□ 0.71
TRIM28-206ENST00000595974 PNMA3Q9UL41 463 aa19.47■□□□□ 0.71
TRIM28-206ENST00000595974 C19orf81C9J6K1 198 aa19.46■□□□□ 0.71
TRIM28-206ENST00000595974 GPAA1O43292 621 aa19.46■□□□□ 0.71
TRIM28-206ENST00000595974 CYP2C8P10632 490 aa19.46■□□□□ 0.71
TRIM28-206ENST00000595974 CYP2D6P10635 497 aa19.46■□□□□ 0.71
TRIM28-206ENST00000595974 GNAT2P19087 354 aa19.46■□□□□ 0.71
TRIM28-206ENST00000595974 BACE1P56817 501 aa19.46■□□□□ 0.71
TRIM28-206ENST00000595974 NUCB1Q02818 461 aa19.46■□□□□ 0.71
TRIM28-206ENST00000595974 EVX2Q03828 476 aa19.46■□□□□ 0.71
TRIM28-206ENST00000595974 PABPC4Q13310 644 aaKnown RBP eCLIP19.46■□□□□ 0.712e-8■■■□□ 14.6
TRIM28-206ENST00000595974 MTMR2Q13614 643 aa19.46■□□□□ 0.71
TRIM28-206ENST00000595974 KIF22Q14807 665 aa19.46■□□□□ 0.71
TRIM28-206ENST00000595974 ABCB5Q2M3G0 1257 aa19.46■□□□□ 0.71
TRIM28-206ENST00000595974 GIMAP6Q6P9H5 292 aa19.46■□□□□ 0.71
TRIM28-206ENST00000595974 CHD1LQ86WJ1 897 aa19.46■□□□□ 0.71
TRIM28-206ENST00000595974 CABP5Q9NP86 173 aa19.46■□□□□ 0.71
TRIM28-206ENST00000595974 ARPP21Q9UBL0 812 aaPredicted RBP19.46■□□□□ 0.71
TRIM28-206ENST00000595974 CPA4Q9UI42 421 aa19.46■□□□□ 0.71
TRIM28-206ENST00000595974 CCDC85CA6NKD9 419 aa19.45■□□□□ 0.7
TRIM28-206ENST00000595974 USP17L10C9JJH3 530 aa19.45■□□□□ 0.7
TRIM28-206ENST00000595974 LACTBP83111 547 aaPredicted RBP19.45■□□□□ 0.7
TRIM28-206ENST00000595974 TREML2Q5T2D2 321 aa19.45■□□□□ 0.7
TRIM28-206ENST00000595974 C12orf60Q5U649 245 aa19.45■□□□□ 0.7
TRIM28-206ENST00000595974 B4GALNT3Q6L9W6 998 aa19.45■□□□□ 0.7
TRIM28-206ENST00000595974 EVI5LQ96CN4 794 aa19.45■□□□□ 0.7
TRIM28-206ENST00000595974 TMOD4Q9NZQ9 345 aa19.45■□□□□ 0.7
TRIM28-206ENST00000595974 HPS5Q9UPZ3 1129 aa19.45■□□□□ 0.7
TRIM28-206ENST00000595974 USP17L12C9JPN9 530 aa19.44■□□□□ 0.7
TRIM28-206ENST00000595974 USP17L21D6R901 530 aa19.44■□□□□ 0.7
TRIM28-206ENST00000595974 BCRP11274 1271 aa19.44■□□□□ 0.7
TRIM28-206ENST00000595974 IRX6P78412 446 aaPredicted RBP19.44■□□□□ 0.7
TRIM28-206ENST00000595974 ZMYM1Q5SVZ6 1142 aa19.44■□□□□ 0.7
TRIM28-206ENST00000595974 SMCR8Q8TEV9 937 aaPredicted RBP19.44■□□□□ 0.7
TRIM28-206ENST00000595974 GSG1L2A8MUP6 293 aa19.43■□□□□ 0.7
TRIM28-206ENST00000595974 M0R2C6 588 aa19.43■□□□□ 0.7
TRIM28-206ENST00000595974 GNRH1P01148 92 aa19.43■□□□□ 0.7
TRIM28-206ENST00000595974 CAP1Q01518 475 aa19.43■□□□□ 0.7
TRIM28-206ENST00000595974 RAB3GAP1Q15042 981 aa19.43■□□□□ 0.7
TRIM28-206ENST00000595974 CTR9Q6PD62 1173 aa19.43■□□□□ 0.7
TRIM28-206ENST00000595974 C16orf86Q6ZW13 317 aa19.43■□□□□ 0.7
TRIM28-206ENST00000595974 TICAM2Q86XR7 235 aa19.43■□□□□ 0.7
TRIM28-206ENST00000595974 SLC44A5Q8NCS7 719 aa19.43■□□□□ 0.7
TRIM28-206ENST00000595974 PTPN22Q9Y2R2 807 aa19.43■□□□□ 0.7
TRIM28-206ENST00000595974 ROBO3Q96MS0 1386 aa19.43■□□□□ 0.7
TRIM28-206ENST00000595974 GREB1LQ9C091 1923 aaPredicted RBP19.43■□□□□ 0.7
TRIM28-206ENST00000595974 CYP2D7A0A087X1C5 515 aa19.42■□□□□ 0.7
TRIM28-206ENST00000595974 SBK1Q52WX2 424 aa19.42■□□□□ 0.7
TRIM28-206ENST00000595974 DYNLL2Q96FJ2 89 aa19.42■□□□□ 0.7
TRIM28-206ENST00000595974 FEZ1Q99689 392 aa19.42■□□□□ 0.7
TRIM28-206ENST00000595974 OSBPL3Q9H4L5 887 aa19.42■□□□□ 0.7
TRIM28-206ENST00000595974 MPHOSPH10O00566 681 aaKnown RBP19.41■□□□□ 0.7
TRIM28-206ENST00000595974 OSBPP22059 807 aa19.41■□□□□ 0.7
TRIM28-206ENST00000595974 USP17L2Q6R6M4 530 aa19.41■□□□□ 0.7
TRIM28-206ENST00000595974 TMEM179Q6ZVK1 233 aa19.41■□□□□ 0.7
TRIM28-206ENST00000595974 C12orf42Q96LP6 360 aa19.41■□□□□ 0.7
TRIM28-206ENST00000595974 CCDC17Q96LX7 622 aa19.41■□□□□ 0.7
TRIM28-206ENST00000595974 ARHGAP39Q9C0H5 1083 aa19.41■□□□□ 0.7
TRIM28-206ENST00000595974 EPB41L4AQ9HCS5 686 aaPredicted RBP19.41■□□□□ 0.7
TRIM28-206ENST00000595974 CENPFP49454 3210 aa19.41■□□□□ 0.7
TRIM28-206ENST00000595974 DOCK3Q8IZD9 2030 aa19.41■□□□□ 0.7
TRIM28-206ENST00000595974 HOXA7P31268 230 aaPredicted RBP19.4■□□□□ 0.7
TRIM28-206ENST00000595974 GUCY1A2P33402 732 aa19.4■□□□□ 0.7
Retrieved 100 of 20,778 RNA–protein pairs in 19.4 ms