RNA–Protein interactions for RNA: ENST00000594806.5

TRIM28-204, Transcript of tripartite motif containing 28, humanhuman

TSL 5

Gene TRIM28, Length 861 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-204ENST00000594806 CCDC171Q6TFL3 1326 aa30.78■■■□□ 2.52
TRIM28-204ENST00000594806 USP17L5A8MUK1 530 aa30.78■■■□□ 2.52
TRIM28-204ENST00000594806 CYP2D6P10635 497 aa30.78■■■□□ 2.52
TRIM28-204ENST00000594806 SHMT1P34896 483 aa30.78■■■□□ 2.52
TRIM28-204ENST00000594806 CCDC129Q6ZRS4 1044 aa30.78■■■□□ 2.52
TRIM28-204ENST00000594806 NAPBQ9H115 298 aa30.78■■■□□ 2.52
TRIM28-204ENST00000594806 AS3MTQ9HBK9 375 aa30.78■■■□□ 2.52
TRIM28-204ENST00000594806 AFG3L2Q9Y4W6 797 aa30.78■■■□□ 2.52
TRIM28-204ENST00000594806 MYH8P13535 1937 aa30.78■■■□□ 2.52
TRIM28-204ENST00000594806 PHIPQ8WWQ0 1821 aa30.77■■■□□ 2.52
TRIM28-204ENST00000594806 ALX1Q15699 326 aa30.77■■■□□ 2.52
TRIM28-204ENST00000594806 C16orf86Q6ZW13 317 aa30.77■■■□□ 2.52
TRIM28-204ENST00000594806 IFNL1Q8IU54 200 aa30.77■■■□□ 2.52
TRIM28-204ENST00000594806 CABP5Q9NP86 173 aa30.77■■■□□ 2.52
TRIM28-204ENST00000594806 RNF186Q9NXI6 227 aa30.77■■■□□ 2.52
TRIM28-204ENST00000594806 CCL15-CCL14A0A0B4J2E2 113 aa30.76■■■□□ 2.51
TRIM28-204ENST00000594806 CTCFP49711 727 aaPredicted RBP30.76■■■□□ 2.51
TRIM28-204ENST00000594806 CCL15Q16663 113 aa30.76■■■□□ 2.51
TRIM28-204ENST00000594806 CWC27Q6UX04 472 aaKnown RBP30.76■■■□□ 2.51
TRIM28-204ENST00000594806 CCDC17Q96LX7 622 aa30.76■■■□□ 2.51
TRIM28-204ENST00000594806 ZBTB21Q9ULJ3 1066 aa30.76■■■□□ 2.51
TRIM28-204ENST00000594806 ABCB5Q2M3G0 1257 aa30.75■■■□□ 2.51
TRIM28-204ENST00000594806 RUFY2Q8WXA3 655 aa30.75■■■□□ 2.51
TRIM28-204ENST00000594806 ZNF287Q9HBT7 754 aa30.75■■■□□ 2.51
TRIM28-204ENST00000594806 ZCCHC17Q9NP64 241 aaKnown RBP30.75■■■□□ 2.51
TRIM28-204ENST00000594806 ROBO3Q96MS0 1386 aa30.75■■■□□ 2.51
TRIM28-204ENST00000594806 CYP2D7A0A087X1C5 515 aa30.74■■■□□ 2.51
TRIM28-204ENST00000594806 MINDY4BA8MYZ0 360 aa30.74■■■□□ 2.51
TRIM28-204ENST00000594806 CDK8P49336 464 aa30.74■■■□□ 2.51
TRIM28-204ENST00000594806 BMP2KLQ5H9B9 411 aa30.74■■■□□ 2.51
TRIM28-204ENST00000594806 ZNF280CQ8ND82 737 aa30.74■■■□□ 2.51
TRIM28-204ENST00000594806 BRI3BPQ8WY22 251 aa30.74■■■□□ 2.51
TRIM28-204ENST00000594806 DYNLL2Q96FJ2 89 aa30.74■■■□□ 2.51
TRIM28-204ENST00000594806 WDR18Q9BV38 432 aa30.74■■■□□ 2.51
TRIM28-204ENST00000594806 ZMYM6O95789 1325 aa30.73■■■□□ 2.51
TRIM28-204ENST00000594806 RAD50Q92878 1312 aa30.73■■■□□ 2.51
TRIM28-204ENST00000594806 PCNTO95613 3336 aa30.73■■■□□ 2.51
TRIM28-204ENST00000594806 FOXN1O15353 648 aa30.73■■■□□ 2.51
TRIM28-204ENST00000594806 GDF11O95390 407 aa30.73■■■□□ 2.51
TRIM28-204ENST00000594806 SLC3A2P08195 630 aaKnown RBP30.73■■■□□ 2.51
TRIM28-204ENST00000594806 FASTKD5Q7L8L6 764 aaKnown RBP30.73■■■□□ 2.51
TRIM28-204ENST00000594806 ZNF589Q86UQ0 364 aaPredicted RBP30.73■■■□□ 2.51
TRIM28-204ENST00000594806 CFHR5Q9BXR6 569 aa30.73■■■□□ 2.51
TRIM28-204ENST00000594806 TRPA1O75762 1119 aa30.72■■■□□ 2.51
TRIM28-204ENST00000594806 GH2P01242 217 aa30.72■■■□□ 2.51
TRIM28-204ENST00000594806 HSPD1P10809 573 aaKnown RBP30.72■■■□□ 2.51
TRIM28-204ENST00000594806 EVX2Q03828 476 aa30.72■■■□□ 2.51
TRIM28-204ENST00000594806 PTPRFP10586 1907 aa30.71■■■□□ 2.51
TRIM28-204ENST00000594806 A0A0G2JLL6 359 aaPredicted RBP30.71■■■□□ 2.51
TRIM28-204ENST00000594806 FOXP2O15409 715 aa30.71■■■□□ 2.51
TRIM28-204ENST00000594806 CHMLP26374 656 aa30.71■■■□□ 2.51
TRIM28-204ENST00000594806 VPS53Q5VIR6 699 aa30.71■■■□□ 2.51
TRIM28-204ENST00000594806 PRRT2Q7Z6L0 340 aaPredicted RBP30.71■■■□□ 2.51
TRIM28-204ENST00000594806 PTPN18Q99952 460 aa30.71■■■□□ 2.51
TRIM28-204ENST00000594806 IGF2BP3O00425 579 aaKnown RBP eCLIP30.7■■■□□ 2.51
TRIM28-204ENST00000594806 JAG1P78504 1218 aa30.7■■■□□ 2.51
TRIM28-204ENST00000594806 SLC44A5Q8NCS7 719 aa30.7■■■□□ 2.51
TRIM28-204ENST00000594806 PPARAQ07869 468 aa30.69■■■□□ 2.5
TRIM28-204ENST00000594806 SPP2Q13103 211 aa30.69■■■□□ 2.5
TRIM28-204ENST00000594806 TMEM179Q6ZVK1 233 aa30.69■■■□□ 2.5
TRIM28-204ENST00000594806 FRMD4AQ9P2Q2 1039 aaPredicted RBP30.69■■■□□ 2.5
TRIM28-204ENST00000594806 TRIM75PA6NK02 468 aa30.68■■■□□ 2.5
TRIM28-204ENST00000594806 C19orf81C9J6K1 198 aa30.68■■■□□ 2.5
TRIM28-204ENST00000594806 FGAP02671 866 aa30.68■■■□□ 2.5
TRIM28-204ENST00000594806 PDE4BQ07343 736 aa30.68■■■□□ 2.5
TRIM28-204ENST00000594806 ANKRD23Q86SG2 305 aa30.68■■■□□ 2.5
TRIM28-204ENST00000594806 MKNK2Q9HBH9 465 aa30.68■■■□□ 2.5
TRIM28-204ENST00000594806 ANAPC4Q9UJX5 808 aa30.68■■■□□ 2.5
TRIM28-204ENST00000594806 HSPA8P11142 646 aaKnown RBP30.67■■■□□ 2.5
TRIM28-204ENST00000594806 NOM1Q5C9Z4 860 aaKnown RBP30.67■■■□□ 2.5
TRIM28-204ENST00000594806 SH3D19Q5HYK7 790 aa30.67■■■□□ 2.5
TRIM28-204ENST00000594806 CCDC84Q86UT8 332 aaPredicted RBP30.67■■■□□ 2.5
TRIM28-204ENST00000594806 DSCC1Q9BVC3 393 aa30.67■■■□□ 2.5
TRIM28-204ENST00000594806 BTBD19C9JJ37 291 aa30.66■■■□□ 2.5
TRIM28-204ENST00000594806 USP17L10C9JJH3 530 aa30.66■■■□□ 2.5
TRIM28-204ENST00000594806 SMIM22K7EJ46 135 aa30.66■■■□□ 2.5
TRIM28-204ENST00000594806 MPHOSPH10O00566 681 aaKnown RBP30.66■■■□□ 2.5
TRIM28-204ENST00000594806 BACE1P56817 501 aa30.66■■■□□ 2.5
TRIM28-204ENST00000594806 RAB3GAP1Q15042 981 aa30.66■■■□□ 2.5
TRIM28-204ENST00000594806 PROCA1Q8NCQ7 364 aaPredicted RBP30.66■■■□□ 2.5
TRIM28-204ENST00000594806 PRDM10Q9NQV6 1147 aa30.66■■■□□ 2.5
TRIM28-204ENST00000594806 MOGSQ13724 837 aa30.65■■■□□ 2.5
TRIM28-204ENST00000594806 SKAP1Q86WV1 359 aa30.65■■■□□ 2.5
TRIM28-204ENST00000594806 FAM43AQ8N2R8 423 aa30.65■■■□□ 2.5
TRIM28-204ENST00000594806 SLC45A1Q9Y2W3 748 aa30.65■■■□□ 2.5
TRIM28-204ENST00000594806 SHROOM1Q2M3G4 852 aaPredicted RBP30.64■■■□□ 2.5
TRIM28-204ENST00000594806 ZNF444Q8N0Y2 327 aaPredicted RBP30.64■■■□□ 2.5
TRIM28-204ENST00000594806 AKR1B1P15121 316 aa30.63■■■□□ 2.49
TRIM28-204ENST00000594806 RASA1P20936 1047 aa30.63■■■□□ 2.49
TRIM28-204ENST00000594806 GUCY1A2P33402 732 aa30.63■■■□□ 2.49
TRIM28-204ENST00000594806 LBX1P52954 281 aa30.63■■■□□ 2.49
TRIM28-204ENST00000594806 SEPT2Q15019 361 aa30.63■■■□□ 2.49
TRIM28-204ENST00000594806 ZFYVE28Q9HCC9 887 aa30.63■■■□□ 2.49
TRIM28-204ENST00000594806 CTNNA3Q9UI47 895 aa30.63■■■□□ 2.49
TRIM28-204ENST00000594806 USP14P54578 494 aa30.62■■■□□ 2.49
TRIM28-204ENST00000594806 TAF1CQ15572 869 aaPredicted RBP30.62■■■□□ 2.49
TRIM28-204ENST00000594806 GADL1Q6ZQY3 521 aa30.62■■■□□ 2.49
TRIM28-204ENST00000594806 KANSL2Q9H9L4 492 aa30.62■■■□□ 2.49
TRIM28-204ENST00000594806 TMOD4Q9NZQ9 345 aa30.62■■■□□ 2.49
TRIM28-204ENST00000594806 SGSM2O43147 1006 aa30.61■■■□□ 2.49
Retrieved 100 of 20,778 RNA–protein pairs in 30.2 ms