RNA–Protein interactions for RNA: ENST00000589351.5

DNMT1-220, Transcript of DNA methyltransferase 1, humanhuman

TSL 2

Gene DNMT1, Length 672 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DNMT1-220ENST00000589351 NYXQ9GZU5 481 aa7.36□□□□□ -1.23
DNMT1-220ENST00000589351 TAF1DQ9H5J8 278 aaPredicted RBP7.36□□□□□ -1.23
DNMT1-220ENST00000589351 NIP7Q9Y221 180 aaKnown RBP eCLIP7.36□□□□□ -1.23
DNMT1-220ENST00000589351 USP16Q9Y5T5 823 aa7.36□□□□□ -1.23
DNMT1-220ENST00000589351 FER1L6Q2WGJ9 1857 aa7.36□□□□□ -1.23
DNMT1-220ENST00000589351 UBR2Q8IWV8 1755 aa7.36□□□□□ -1.23
DNMT1-220ENST00000589351 CNTNAP1P78357 1384 aa7.35□□□□□ -1.23
DNMT1-220ENST00000589351 NPC1L1Q9UHC9 1359 aa7.35□□□□□ -1.23
DNMT1-220ENST00000589351 A0A0A0MRY4 1105 aa7.35□□□□□ -1.23
DNMT1-220ENST00000589351 ELNP15502 786 aa7.35□□□□□ -1.23
DNMT1-220ENST00000589351 LMOD1P29536 600 aaPredicted RBP7.35□□□□□ -1.23
DNMT1-220ENST00000589351 PRKAR2BP31323 418 aa7.35□□□□□ -1.23
DNMT1-220ENST00000589351 EPHX2P34913 555 aa7.35□□□□□ -1.23
DNMT1-220ENST00000589351 IARSP41252 1262 aaKnown RBP7.35□□□□□ -1.23
DNMT1-220ENST00000589351 MAP2K1Q02750 393 aaPredicted RBP7.35□□□□□ -1.23
DNMT1-220ENST00000589351 SPEM2Q0P670 501 aa7.35□□□□□ -1.23
DNMT1-220ENST00000589351 TAF7Q15545 349 aaPredicted RBP7.35□□□□□ -1.23
DNMT1-220ENST00000589351 MAP7D1Q3KQU3 841 aa7.35□□□□□ -1.23
DNMT1-220ENST00000589351 CNTROBQ8N137 903 aa7.35□□□□□ -1.23
DNMT1-220ENST00000589351 GPC2Q8N158 579 aa7.35□□□□□ -1.23
DNMT1-220ENST00000589351 C7orf43Q8WVR3 580 aa7.35□□□□□ -1.23
DNMT1-220ENST00000589351 LENG1Q96BZ8 264 aaPredicted RBP7.35□□□□□ -1.23
DNMT1-220ENST00000589351 SCN4AP35499 1836 aa7.35□□□□□ -1.23
DNMT1-220ENST00000589351 CEMIPQ8WUJ3 1361 aa7.34□□□□□ -1.23
DNMT1-220ENST00000589351 PASKQ96RG2 1323 aa7.34□□□□□ -1.23
DNMT1-220ENST00000589351 KLRG2A4D1S0 409 aaPredicted RBP7.34□□□□□ -1.23
DNMT1-220ENST00000589351 FAM177BA6PVY3 158 aa7.34□□□□□ -1.23
DNMT1-220ENST00000589351 EML1O00423 815 aa7.34□□□□□ -1.23
DNMT1-220ENST00000589351 FOXN1O15353 648 aa7.34□□□□□ -1.23
DNMT1-220ENST00000589351 U2AF1L5P0DN76 240 aaPredicted RBP7.34□□□□□ -1.23
DNMT1-220ENST00000589351 CDK11BP21127 795 aaKnown RBP7.34□□□□□ -1.23
DNMT1-220ENST00000589351 U2AF1Q01081 240 aaKnown RBP eCLIP7.34□□□□□ -1.23
DNMT1-220ENST00000589351 SYNE4Q8N205 404 aa7.34□□□□□ -1.23
DNMT1-220ENST00000589351 PNISRQ8TF01 805 aaKnown RBP7.34□□□□□ -1.23
DNMT1-220ENST00000589351 RPGRQ92834 1020 aaKnown RBP7.34□□□□□ -1.23
DNMT1-220ENST00000589351 ZNF428Q96B54 188 aa7.34□□□□□ -1.23
DNMT1-220ENST00000589351 SSBP4Q9BWG4 385 aaPredicted RBP7.34□□□□□ -1.23
DNMT1-220ENST00000589351 CHMP4AQ9BY43 222 aa7.34□□□□□ -1.23
DNMT1-220ENST00000589351 NEUROD4Q9HD90 331 aa7.34□□□□□ -1.23
DNMT1-220ENST00000589351 ZNF277Q9NRM2 450 aaPredicted RBP7.34□□□□□ -1.23
DNMT1-220ENST00000589351 MTMR7Q9Y216 660 aa7.34□□□□□ -1.23
DNMT1-220ENST00000589351 PCDHGA11Q9Y5H2 935 aa7.34□□□□□ -1.23
DNMT1-220ENST00000589351 ANKRD31Q8N7Z5 1873 aa7.34□□□□□ -1.23
DNMT1-220ENST00000589351 SLX4Q8IY92 1834 aa7.34□□□□□ -1.24
DNMT1-220ENST00000589351 SCN7AQ01118 1682 aa7.33□□□□□ -1.24
DNMT1-220ENST00000589351 FZD9O00144 591 aa7.33□□□□□ -1.24
DNMT1-220ENST00000589351 KCNQ3O43525 872 aa7.33□□□□□ -1.24
DNMT1-220ENST00000589351 LILRB5O75023 590 aa7.33□□□□□ -1.24
DNMT1-220ENST00000589351 ECE1P42892 770 aa7.33□□□□□ -1.24
DNMT1-220ENST00000589351 NRG1Q02297 640 aaPredicted RBP7.33□□□□□ -1.24
DNMT1-220ENST00000589351 MCTP1Q6DN14 999 aa7.33□□□□□ -1.24
DNMT1-220ENST00000589351 KIF6Q6ZMV9 814 aa7.33□□□□□ -1.24
DNMT1-220ENST00000589351 PHACTR3Q96KR7 559 aa7.33□□□□□ -1.24
DNMT1-220ENST00000589351 PSMD1Q99460 953 aa7.33□□□□□ -1.24
DNMT1-220ENST00000589351 PNNQ9H307 717 aaKnown RBP7.33□□□□□ -1.24
DNMT1-220ENST00000589351 SCHIP1Q9P0W5 487 aaPredicted RBP7.33□□□□□ -1.24
DNMT1-220ENST00000589351 ABT1Q9ULW3 272 aaKnown RBP7.33□□□□□ -1.24
DNMT1-220ENST00000589351 RASSF10A6NK89 507 aa7.32□□□□□ -1.24
DNMT1-220ENST00000589351 ERVV-1B6SEH8 477 aa7.32□□□□□ -1.24
DNMT1-220ENST00000589351 HSP90B1P14625 803 aaKnown RBP7.32□□□□□ -1.24
DNMT1-220ENST00000589351 NOS2P35228 1153 aa7.32□□□□□ -1.24
DNMT1-220ENST00000589351 PIP4K2AP48426 406 aaPredicted RBP7.32□□□□□ -1.24
DNMT1-220ENST00000589351 VAC14Q08AM6 782 aa7.32□□□□□ -1.24
DNMT1-220ENST00000589351 TEAD4Q15561 434 aa7.32□□□□□ -1.24
DNMT1-220ENST00000589351 MCM10Q7L590 875 aa7.32□□□□□ -1.24
DNMT1-220ENST00000589351 RBM17Q96I25 401 aaKnown RBP7.32□□□□□ -1.24
DNMT1-220ENST00000589351 TRAIPQ9BWF2 469 aa7.32□□□□□ -1.24
DNMT1-220ENST00000589351 VPS33BQ9H267 617 aa7.32□□□□□ -1.24
DNMT1-220ENST00000589351 CACNA1SQ13698 1873 aa7.32□□□□□ -1.24
DNMT1-220ENST00000589351 RNF123Q5XPI4 1314 aa7.31□□□□□ -1.24
DNMT1-220ENST00000589351 WDR33Q9C0J8 1336 aaKnown RBP7.31□□□□□ -1.24
DNMT1-220ENST00000589351 LBX1P52954 281 aa7.31□□□□□ -1.24
DNMT1-220ENST00000589351 RAC1P63000 192 aa7.31□□□□□ -1.24
DNMT1-220ENST00000589351 MAP1SQ66K74 1059 aaPredicted RBP7.31□□□□□ -1.24
DNMT1-220ENST00000589351 USP50Q70EL3 339 aaPredicted RBP7.31□□□□□ -1.24
DNMT1-220ENST00000589351 PPP1R42Q7Z4L9 355 aa7.31□□□□□ -1.24
DNMT1-220ENST00000589351 LARGE2Q8N3Y3 721 aa7.31□□□□□ -1.24
DNMT1-220ENST00000589351 CCDC82Q8N4S0 544 aa7.31□□□□□ -1.24
DNMT1-220ENST00000589351 NGEFQ8N5V2 710 aa7.31□□□□□ -1.24
DNMT1-220ENST00000589351 SUPT20HQ8NEM7 779 aa7.31□□□□□ -1.24
DNMT1-220ENST00000589351 DDX21Q9NR30 783 aaKnown RBP eCLIP7.31□□□□□ -1.24
DNMT1-220ENST00000589351 RRP7AQ9Y3A4 280 aaKnown RBP7.31□□□□□ -1.24
DNMT1-220ENST00000589351 PCNTO95613 3336 aa7.31□□□□□ -1.24
DNMT1-220ENST00000589351 SIPA1L3O60292 1781 aaPredicted RBP7.31□□□□□ -1.24
DNMT1-220ENST00000589351 ARFGEF2Q9Y6D5 1785 aa7.31□□□□□ -1.24
DNMT1-220ENST00000589351 ZNF541Q9H0D2 1346 aa7.3□□□□□ -1.24
DNMT1-220ENST00000589351 COL11A2P13942 1736 aaPredicted RBP7.3□□□□□ -1.24
DNMT1-220ENST00000589351 PRAMEF22A3QJZ6 481 aa7.3□□□□□ -1.24
DNMT1-220ENST00000589351 BACH1O14867 736 aa7.3□□□□□ -1.24
DNMT1-220ENST00000589351 HMGB1P09429 215 aaKnown RBP7.3□□□□□ -1.24
DNMT1-220ENST00000589351 HOXA10P31260 410 aaPredicted RBP7.3□□□□□ -1.24
DNMT1-220ENST00000589351 HLFQ16534 295 aa7.3□□□□□ -1.24
DNMT1-220ENST00000589351 TBCELQ5QJ74 424 aa7.3□□□□□ -1.24
DNMT1-220ENST00000589351 SH3PXD2AQ5TCZ1 1133 aa7.3□□□□□ -1.24
DNMT1-220ENST00000589351 NIM1KQ8IY84 436 aa7.3□□□□□ -1.24
DNMT1-220ENST00000589351 SERBP1Q8NC51 408 aaKnown RBP eCLIP7.3□□□□□ -1.24
DNMT1-220ENST00000589351 GPR101Q96P66 508 aaPredicted RBP7.3□□□□□ -1.24
DNMT1-220ENST00000589351 CRAMP1Q96RY5 1269 aa7.3□□□□□ -1.24
DNMT1-220ENST00000589351 RNF112Q9ULX5 631 aa7.3□□□□□ -1.24
DNMT1-220ENST00000589351 ZNF232Q9UNY5 417 aa7.3□□□□□ -1.24
Retrieved 100 of 20,778 RNA–protein pairs in 18.9 ms