RNA–Protein interactions for RNA: ENST00000571805.5

VPS53-211, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS53, Length 2,356 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-211ENST00000571805 CFAP100Q494V2 611 aa26.13■■□□□ 1.77
VPS53-211ENST00000571805 GNL3LQ9NVN8 582 aaKnown RBP26.13■■□□□ 1.77
VPS53-211ENST00000571805 TAF1P21675 1872 aa26.13■■□□□ 1.77
VPS53-211ENST00000571805 AHDC1Q5TGY3 1603 aaPredicted RBP26.12■■□□□ 1.77
VPS53-211ENST00000571805 NRDCO43847 1150 aa26.12■■□□□ 1.77
VPS53-211ENST00000571805 PRR29P0C7W0 189 aa26.12■■□□□ 1.77
VPS53-211ENST00000571805 FUT2Q10981 343 aa26.12■■□□□ 1.77
VPS53-211ENST00000571805 UBE4AQ14139 1066 aa26.12■■□□□ 1.77
VPS53-211ENST00000571805 PKN1Q16512 942 aa26.12■■□□□ 1.77
VPS53-211ENST00000571805 ENAHQ8N8S7 591 aaPredicted RBP26.12■■□□□ 1.77
VPS53-211ENST00000571805 CABP5Q9NP86 173 aa26.12■■□□□ 1.77
VPS53-211ENST00000571805 TMEM232C9JQI7 657 aa26.12■■□□□ 1.77
VPS53-211ENST00000571805 ANKRD18AQ8IVF6 992 aa26.12■■□□□ 1.77
VPS53-211ENST00000571805 INTS13Q9NVM9 706 aa26.12■■□□□ 1.77
VPS53-211ENST00000571805 CGNQ9P2M7 1197 aaKnown RBP26.12■■□□□ 1.77
VPS53-211ENST00000571805 SF3B3Q15393 1217 aaKnown RBP26.11■■□□□ 1.77
VPS53-211ENST00000571805 ERFEQ4G0M1 354 aa26.11■■□□□ 1.77
VPS53-211ENST00000571805 ZSCAN10Q96SZ4 725 aaPredicted RBP26.11■■□□□ 1.77
VPS53-211ENST00000571805 CEP131Q9UPN4 1083 aa26.11■■□□□ 1.77
VPS53-211ENST00000571805 ZNF652Q9Y2D9 606 aa26.11■■□□□ 1.77
VPS53-211ENST00000571805 DUOX1Q9NRD9 1551 aa26.11■■□□□ 1.77
VPS53-211ENST00000571805 BAZ2AQ9UIF9 1905 aaKnown RBP26.11■■□□□ 1.77
VPS53-211ENST00000571805 NRAPQ86VF7 1730 aa26.11■■□□□ 1.77
VPS53-211ENST00000571805 DYNLL1P63167 89 aaKnown RBP26.11■■□□□ 1.77
VPS53-211ENST00000571805 MORC3Q14149 939 aa26.11■■□□□ 1.77
VPS53-211ENST00000571805 ZNF384Q8TF68 577 aa26.11■■□□□ 1.77
VPS53-211ENST00000571805 BSDC1Q9NW68 430 aaPredicted RBP26.11■■□□□ 1.77
VPS53-211ENST00000571805 MORC2Q9Y6X9 1032 aaPredicted RBP26.11■■□□□ 1.77
VPS53-211ENST00000571805 ACTN4O43707 911 aaKnown RBP26.1■■□□□ 1.77
VPS53-211ENST00000571805 CLEC4GQ6UXB4 293 aa26.1■■□□□ 1.77
VPS53-211ENST00000571805 USP49Q70CQ1 688 aa26.1■■□□□ 1.77
VPS53-211ENST00000571805 ERO1AQ96HE7 468 aa26.1■■□□□ 1.77
VPS53-211ENST00000571805 BRIP1Q9BX63 1249 aa26.1■■□□□ 1.77
VPS53-211ENST00000571805 SPDYE4A6NLX3 237 aa26.1■■□□□ 1.77
VPS53-211ENST00000571805 MLKLQ8NB16 471 aa26.1■■□□□ 1.77
VPS53-211ENST00000571805 FEZ1Q99689 392 aa26.1■■□□□ 1.77
VPS53-211ENST00000571805 CSRNP2Q9H175 543 aa26.1■■□□□ 1.77
VPS53-211ENST00000571805 L2HGDHQ9H9P8 463 aa26.1■■□□□ 1.77
VPS53-211ENST00000571805 CASZ1Q86V15 1759 aa26.09■■□□□ 1.77
VPS53-211ENST00000571805 CYP2D7A0A087X1C5 515 aa26.09■■□□□ 1.77
VPS53-211ENST00000571805 FGRP09769 529 aa26.09■■□□□ 1.77
VPS53-211ENST00000571805 ATP2B1P20020 1258 aa26.09■■□□□ 1.77
VPS53-211ENST00000571805 FMR1Q06787 632 aaKnown RBP eCLIP26.09■■□□□ 1.774e-8■■■■■ 46.3
VPS53-211ENST00000571805 PHF20Q9BVI0 1012 aa26.09■■□□□ 1.77
VPS53-211ENST00000571805 COL5A3P25940 1745 aaPredicted RBP26.09■■□□□ 1.77
VPS53-211ENST00000571805 ZNF18P17022 549 aa26.09■■□□□ 1.77
VPS53-211ENST00000571805 GRAMD1CQ8IYS0 662 aa26.09■■□□□ 1.77
VPS53-211ENST00000571805 SPATA20Q8TB22 786 aa26.09■■□□□ 1.77
VPS53-211ENST00000571805 SMARCE1Q969G3 411 aa26.09■■□□□ 1.77
VPS53-211ENST00000571805 FAM84BQ96KN1 310 aaPredicted RBP26.09■■□□□ 1.77
VPS53-211ENST00000571805 BCL11BQ9C0K0 894 aaPredicted RBP26.09■■□□□ 1.77
VPS53-211ENST00000571805 MINPP1Q9UNW1 487 aa26.09■■□□□ 1.77
VPS53-211ENST00000571805 FAM205CA6NFA0 338 aa26.08■■□□□ 1.77
VPS53-211ENST00000571805 PRPF3O43395 683 aaKnown RBP26.08■■□□□ 1.77
VPS53-211ENST00000571805 SLU7O95391 586 aaKnown RBP26.08■■□□□ 1.77
VPS53-211ENST00000571805 TUBB4AP04350 444 aa26.08■■□□□ 1.77
VPS53-211ENST00000571805 TOP1P11387 765 aaKnown RBP26.08■■□□□ 1.77
VPS53-211ENST00000571805 SYT10Q6XYQ8 523 aa26.08■■□□□ 1.77
VPS53-211ENST00000571805 NOL10Q9BSC4 688 aaKnown RBP26.08■■□□□ 1.77
VPS53-211ENST00000571805 VPS54Q9P1Q0 977 aa26.08■■□□□ 1.77
VPS53-211ENST00000571805 SCN7AQ01118 1682 aa26.08■■□□□ 1.76
VPS53-211ENST00000571805 PTPN21Q16825 1174 aa26.07■■□□□ 1.76
VPS53-211ENST00000571805 EARS2Q5JPH6 523 aaKnown RBP26.07■■□□□ 1.76
VPS53-211ENST00000571805 TRIML1Q8N9V2 468 aa26.07■■□□□ 1.76
VPS53-211ENST00000571805 ENOX1Q8TC92 643 aaKnown RBP26.07■■□□□ 1.76
VPS53-211ENST00000571805 ADAMTS2O95450 1211 aa26.07■■□□□ 1.76
VPS53-211ENST00000571805 AKAP17AQ02040 695 aaKnown RBP26.07■■□□□ 1.76
VPS53-211ENST00000571805 CAVIN4Q5BKX8 364 aa26.07■■□□□ 1.76
VPS53-211ENST00000571805 KANK3Q6NY19 840 aa26.07■■□□□ 1.76
VPS53-211ENST00000571805 PDILTQ8N807 584 aa26.07■■□□□ 1.76
VPS53-211ENST00000571805 MED15Q96RN5 788 aa26.07■■□□□ 1.76
VPS53-211ENST00000571805 DLEC1Q9Y238 1755 aa26.07■■□□□ 1.76
VPS53-211ENST00000571805 TROAPQ12815 778 aa26.06■■□□□ 1.76
VPS53-211ENST00000571805 TBX2Q13207 712 aaPredicted RBP26.06■■□□□ 1.76
VPS53-211ENST00000571805 ZNF827Q17R98 1081 aa26.06■■□□□ 1.76
VPS53-211ENST00000571805 CCDC93Q567U6 631 aa26.06■■□□□ 1.76
VPS53-211ENST00000571805 IFIT1BQ5T764 474 aaKnown RBP26.06■■□□□ 1.76
VPS53-211ENST00000571805 TRIM75PA6NK02 468 aa26.06■■□□□ 1.76
VPS53-211ENST00000571805 PLEKHA8P1O95397 391 aa26.06■■□□□ 1.76
VPS53-211ENST00000571805 XBP1P17861 261 aa26.06■■□□□ 1.76
VPS53-211ENST00000571805 GOLGA8FQ08AF8 430 aa26.06■■□□□ 1.76
VPS53-211ENST00000571805 GOLGA8DPQ0D2H9 430 aa26.06■■□□□ 1.76
VPS53-211ENST00000571805 TMEM139Q8IV31 216 aa26.06■■□□□ 1.76
VPS53-211ENST00000571805 AATFQ9NY61 560 aaKnown RBP eCLIP26.06■■□□□ 1.76
VPS53-211ENST00000571805 NOL12Q9UGY1 213 aaKnown RBP eCLIP26.06■■□□□ 1.76
VPS53-211ENST00000571805 NFE2L3Q9Y4A8 694 aa26.06■■□□□ 1.76
VPS53-211ENST00000571805 V9GYY5 206 aaPredicted RBP26.06■■□□□ 1.76
VPS53-211ENST00000571805 KCNQ2O43526 872 aa26.05■■□□□ 1.76
VPS53-211ENST00000571805 CTR9Q6PD62 1173 aa26.05■■□□□ 1.76
VPS53-211ENST00000571805 CATIPQ7Z7H3 387 aa26.05■■□□□ 1.76
VPS53-211ENST00000571805 PRDM10Q9NQV6 1147 aa26.05■■□□□ 1.76
VPS53-211ENST00000571805 DACH1Q9UI36 760 aa26.05■■□□□ 1.76
VPS53-211ENST00000571805 V9GY48 417 aaPredicted RBP26.05■■□□□ 1.76
VPS53-211ENST00000571805 hCG_1642624A0A1W2PR95 340 aa26.05■■□□□ 1.76
VPS53-211ENST00000571805 CCP110O43303 1012 aa26.05■■□□□ 1.76
VPS53-211ENST00000571805 PRDM1O75626 825 aa26.05■■□□□ 1.76
VPS53-211ENST00000571805 KRT2P35908 639 aa26.05■■□□□ 1.76
VPS53-211ENST00000571805 PCP11498 1178 aaKnown RBP26.04■■□□□ 1.76
VPS53-211ENST00000571805 ZSCAN20P17040 1043 aaPredicted RBP26.04■■□□□ 1.76
VPS53-211ENST00000571805 HSP90AA4PQ58FG1 418 aa26.04■■□□□ 1.76
Retrieved 100 of 20,778 RNA–protein pairs in 16.7 ms