RNA–Protein interactions for RNA: ENST00000565228.1

VPS35-206, Transcript of VPS35, retromer complex component, humanhuman

TSL 3

Gene VPS35, Length 487 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-206ENST00000565228 NBPF3Q9H094 633 aa11.09□□□□□ -0.63
VPS35-206ENST00000565228 EHD4Q9H223 541 aa11.09□□□□□ -0.63
VPS35-206ENST00000565228 KCNH4Q9UQ05 1017 aa11.09□□□□□ -0.63
VPS35-206ENST00000565228 AFG3L2Q9Y4W6 797 aa11.09□□□□□ -0.63
VPS35-206ENST00000565228 CTNND1O60716 968 aaKnown RBP11.08□□□□□ -0.64
VPS35-206ENST00000565228 ZBTB48P10074 688 aaPredicted RBP11.08□□□□□ -0.64
VPS35-206ENST00000565228 AKR1B1P15121 316 aa11.08□□□□□ -0.64
VPS35-206ENST00000565228 PPIL2Q13356 520 aa11.08□□□□□ -0.64
VPS35-206ENST00000565228 GPAT2Q6NUI2 795 aa11.08□□□□□ -0.64
VPS35-206ENST00000565228 POTEEQ6S8J3 1075 aa11.08□□□□□ -0.64
VPS35-206ENST00000565228 ERO1BQ86YB8 467 aa11.08□□□□□ -0.64
VPS35-206ENST00000565228 IFNL1Q8IU54 200 aa11.08□□□□□ -0.64
VPS35-206ENST00000565228 STK11IPQ8N1F8 1099 aa11.08□□□□□ -0.64
VPS35-206ENST00000565228 CCDC136Q96JN2 1154 aa11.08□□□□□ -0.64
VPS35-206ENST00000565228 ATP8A2Q9NTI2 1148 aa11.08□□□□□ -0.64
VPS35-206ENST00000565228 ZBTB47Q9UFB7 747 aaPredicted RBP11.08□□□□□ -0.64
VPS35-206ENST00000565228 HERC5Q9UII4 1024 aaKnown RBP11.08□□□□□ -0.64
VPS35-206ENST00000565228 SERPINB13Q9UIV8 391 aa11.08□□□□□ -0.64
VPS35-206ENST00000565228 LOC285556D6RIA3 1793 aa11.08□□□□□ -0.64
VPS35-206ENST00000565228 A0A1W2PRG0 241 aa11.07□□□□□ -0.64
VPS35-206ENST00000565228 PATL2C9JE40 543 aaKnown RBP11.07□□□□□ -0.64
VPS35-206ENST00000565228 BTBD19C9JJ37 291 aa11.07□□□□□ -0.64
VPS35-206ENST00000565228 TRPA1O75762 1119 aa11.07□□□□□ -0.64
VPS35-206ENST00000565228 TBC1D8O95759 1140 aa11.07□□□□□ -0.64
VPS35-206ENST00000565228 GH2P01242 217 aa11.07□□□□□ -0.64
VPS35-206ENST00000565228 POLR3DP05423 398 aaPredicted RBP11.07□□□□□ -0.64
VPS35-206ENST00000565228 CHMLP26374 656 aa11.07□□□□□ -0.64
VPS35-206ENST00000565228 CDK8P49336 464 aa11.07□□□□□ -0.64
VPS35-206ENST00000565228 PPATQ06203 517 aa11.07□□□□□ -0.64
VPS35-206ENST00000565228 MCMDC2Q4G0Z9 681 aa11.07□□□□□ -0.64
VPS35-206ENST00000565228 SBK1Q52WX2 424 aa11.07□□□□□ -0.64
VPS35-206ENST00000565228 KIAA1755Q5JYT7 1200 aa11.07□□□□□ -0.64
VPS35-206ENST00000565228 CWC27Q6UX04 472 aaKnown RBP11.07□□□□□ -0.64
VPS35-206ENST00000565228 C16orf86Q6ZW13 317 aa11.07□□□□□ -0.64
VPS35-206ENST00000565228 CERS3Q8IU89 383 aa11.07□□□□□ -0.64
VPS35-206ENST00000565228 ACER1Q8TDN7 264 aa11.07□□□□□ -0.64
VPS35-206ENST00000565228 PRDM10Q9NQV6 1147 aa11.07□□□□□ -0.64
VPS35-206ENST00000565228 HELLSQ9NRZ9 838 aa11.07□□□□□ -0.64
VPS35-206ENST00000565228 ZBTB21Q9ULJ3 1066 aa11.07□□□□□ -0.64
VPS35-206ENST00000565228 CSADQ9Y600 493 aa11.07□□□□□ -0.64
VPS35-206ENST00000565228 ZHX2Q9Y6X8 837 aa11.07□□□□□ -0.64
VPS35-206ENST00000565228 ROBO3Q96MS0 1386 aa11.06□□□□□ -0.64
VPS35-206ENST00000565228 CCL15-CCL14A0A0B4J2E2 113 aa11.06□□□□□ -0.64
VPS35-206ENST00000565228 HSPD1P10809 573 aaKnown RBP11.06□□□□□ -0.64
VPS35-206ENST00000565228 RASA1P20936 1047 aa11.06□□□□□ -0.64
VPS35-206ENST00000565228 DSG3P32926 999 aa11.06□□□□□ -0.64
VPS35-206ENST00000565228 LBX1P52954 281 aa11.06□□□□□ -0.64
VPS35-206ENST00000565228 COL9A3Q14050 684 aaPredicted RBP11.06□□□□□ -0.64
VPS35-206ENST00000565228 CCL15Q16663 113 aa11.06□□□□□ -0.64
VPS35-206ENST00000565228 TREML2Q5T2D2 321 aa11.06□□□□□ -0.64
VPS35-206ENST00000565228 HOOK2Q96ED9 719 aa11.06□□□□□ -0.64
VPS35-206ENST00000565228 PPP4R2Q9NY27 417 aa11.06□□□□□ -0.64
VPS35-206ENST00000565228 TAF6LQ9Y6J9 622 aa11.06□□□□□ -0.64
VPS35-206ENST00000565228 RLFQ13129 1914 aa11.05□□□□□ -0.64
VPS35-206ENST00000565228 LAMA4Q16363 1823 aa11.05□□□□□ -0.64
VPS35-206ENST00000565228 A0A0G2JLL6 359 aaPredicted RBP11.05□□□□□ -0.64
VPS35-206ENST00000565228 MANSC4A6NHS7 340 aaPredicted RBP11.05□□□□□ -0.64
VPS35-206ENST00000565228 PEX10O60683 326 aa11.05□□□□□ -0.64
VPS35-206ENST00000565228 PRDM1O75626 825 aa11.05□□□□□ -0.64
VPS35-206ENST00000565228 FGAP02671 866 aa11.05□□□□□ -0.64
VPS35-206ENST00000565228 HLA-DOAP06340 250 aa11.05□□□□□ -0.64
VPS35-206ENST00000565228 MAP2K1Q02750 393 aaPredicted RBP11.05□□□□□ -0.64
VPS35-206ENST00000565228 PTH1RQ03431 593 aa11.05□□□□□ -0.64
VPS35-206ENST00000565228 CTDSPL2Q05D32 466 aa11.05□□□□□ -0.64
VPS35-206ENST00000565228 SPP2Q13103 211 aa11.05□□□□□ -0.64
VPS35-206ENST00000565228 SEPT2Q15019 361 aa11.05□□□□□ -0.64
VPS35-206ENST00000565228 GIMAP6Q6P9H5 292 aa11.05□□□□□ -0.64
VPS35-206ENST00000565228 PRRT2Q7Z6L0 340 aaPredicted RBP11.05□□□□□ -0.64
VPS35-206ENST00000565228 TTC6Q86TZ1 520 aa11.05□□□□□ -0.64
VPS35-206ENST00000565228 DDX52Q9Y2R4 599 aaKnown RBP eCLIP11.05□□□□□ -0.64
VPS35-206ENST00000565228 CCDC171Q6TFL3 1326 aa11.05□□□□□ -0.64
VPS35-206ENST00000565228 ADGRA2Q96PE1 1338 aa11.05□□□□□ -0.64
VPS35-206ENST00000565228 TRIM75PA6NK02 468 aa11.04□□□□□ -0.64
VPS35-206ENST00000565228 MINDY4BA8MYZ0 360 aa11.04□□□□□ -0.64
VPS35-206ENST00000565228 CRHR2Q13324 411 aa11.04□□□□□ -0.64
VPS35-206ENST00000565228 ALX1Q15699 326 aa11.04□□□□□ -0.64
VPS35-206ENST00000565228 CERKLQ49MI3 558 aaPredicted RBP11.04□□□□□ -0.64
VPS35-206ENST00000565228 TBC1D10CQ8IV04 446 aa11.04□□□□□ -0.64
VPS35-206ENST00000565228 CRACR2BQ8N4Y2 399 aaPredicted RBP11.04□□□□□ -0.64
VPS35-206ENST00000565228 EMILIN3Q9NT22 766 aa11.04□□□□□ -0.64
VPS35-206ENST00000565228 ARPP21Q9UBL0 812 aaPredicted RBP11.04□□□□□ -0.64
VPS35-206ENST00000565228 DOCK3Q8IZD9 2030 aa11.04□□□□□ -0.64
VPS35-206ENST00000565228 HTTP42858 3142 aa11.03□□□□□ -0.64
VPS35-206ENST00000565228 IGKV6D-41A0A0C4DH26 115 aa11.03□□□□□ -0.64
VPS35-206ENST00000565228 APPP05067 770 aa11.03□□□□□ -0.64
VPS35-206ENST00000565228 NEFLP07196 543 aa11.03□□□□□ -0.64
VPS35-206ENST00000565228 CTGFP29279 349 aa11.03□□□□□ -0.64
VPS35-206ENST00000565228 TDO2P48775 406 aa11.03□□□□□ -0.64
VPS35-206ENST00000565228 RGS19P49795 217 aa11.03□□□□□ -0.64
VPS35-206ENST00000565228 GTF2A2P52657 109 aa11.03□□□□□ -0.64
VPS35-206ENST00000565228 PPARAQ07869 468 aa11.03□□□□□ -0.64
VPS35-206ENST00000565228 ABCB5Q2M3G0 1257 aa11.03□□□□□ -0.64
VPS35-206ENST00000565228 ZNF280CQ8ND82 737 aa11.03□□□□□ -0.64
VPS35-206ENST00000565228 WDR18Q9BV38 432 aa11.03□□□□□ -0.64
VPS35-206ENST00000565228 PARP14Q460N5 1801 aa11.02□□□□□ -0.64
VPS35-206ENST00000565228 USP17L5A8MUK1 530 aa11.02□□□□□ -0.65
VPS35-206ENST00000565228 CXCL11O14625 94 aa11.02□□□□□ -0.65
VPS35-206ENST00000565228 SGSM2O43147 1006 aa11.02□□□□□ -0.65
VPS35-206ENST00000565228 FGRP09769 529 aa11.02□□□□□ -0.65
VPS35-206ENST00000565228 CYP2C8P10632 490 aa11.02□□□□□ -0.65
Retrieved 100 of 20,778 RNA–protein pairs in 27.2 ms