RNA–Protein interactions for RNA: ENST00000560173.1

LDLR-211, Transcript of low density lipoprotein receptor, humanhuman

TSL 3

Gene LDLR, Length 389 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-211ENST00000560173 DDRGK1Q96HY6 314 aa11.23□□□□□ -0.61
LDLR-211ENST00000560173 EPB41L4AQ9HCS5 686 aaPredicted RBP11.23□□□□□ -0.61
LDLR-211ENST00000560173 TAOK2Q9UL54 1235 aa11.23□□□□□ -0.61
LDLR-211ENST00000560173 ZHX2Q9Y6X8 837 aa11.23□□□□□ -0.61
LDLR-211ENST00000560173 BAZ2AQ9UIF9 1905 aaKnown RBP11.23□□□□□ -0.61
LDLR-211ENST00000560173 CYP2D7A0A087X1C5 515 aa11.22□□□□□ -0.61
LDLR-211ENST00000560173 A0A0D9SFI3 127 aa11.22□□□□□ -0.61
LDLR-211ENST00000560173 USP17L12C9JPN9 530 aa11.22□□□□□ -0.61
LDLR-211ENST00000560173 USP17L21D6R901 530 aa11.22□□□□□ -0.61
LDLR-211ENST00000560173 SMIM22K7EJ46 135 aa11.22□□□□□ -0.61
LDLR-211ENST00000560173 CXCL11O14625 94 aa11.22□□□□□ -0.61
LDLR-211ENST00000560173 GDF11O95390 407 aa11.22□□□□□ -0.61
LDLR-211ENST00000560173 ALDH1A1P00352 501 aa11.22□□□□□ -0.61
LDLR-211ENST00000560173 ASNSP08243 561 aa11.22□□□□□ -0.61
LDLR-211ENST00000560173 GSPT1P15170 499 aaKnown RBP11.22□□□□□ -0.61
LDLR-211ENST00000560173 MOGSQ13724 837 aa11.22□□□□□ -0.61
LDLR-211ENST00000560173 SHROOM1Q2M3G4 852 aaPredicted RBP11.22□□□□□ -0.61
LDLR-211ENST00000560173 TTC22Q5TAA0 569 aa11.22□□□□□ -0.61
LDLR-211ENST00000560173 C12orf60Q5U649 245 aa11.22□□□□□ -0.61
LDLR-211ENST00000560173 CTR9Q6PD62 1173 aa11.22□□□□□ -0.61
LDLR-211ENST00000560173 CCDC129Q6ZRS4 1044 aa11.22□□□□□ -0.61
LDLR-211ENST00000560173 PHIPQ8WWQ0 1821 aa11.22□□□□□ -0.61
LDLR-211ENST00000560173 RILPL2Q969X0 211 aa11.22□□□□□ -0.61
LDLR-211ENST00000560173 FAM227BQ96M60 508 aa11.22□□□□□ -0.61
LDLR-211ENST00000560173 CFHR5Q9BXR6 569 aa11.22□□□□□ -0.61
LDLR-211ENST00000560173 HELLSQ9NRZ9 838 aa11.22□□□□□ -0.61
LDLR-211ENST00000560173 GINM1Q9NU53 330 aa11.22□□□□□ -0.61
LDLR-211ENST00000560173 ARPP21Q9UBL0 812 aaPredicted RBP11.22□□□□□ -0.61
LDLR-211ENST00000560173 ZBTB21Q9ULJ3 1066 aa11.22□□□□□ -0.61
LDLR-211ENST00000560173 AFG3L2Q9Y4W6 797 aa11.22□□□□□ -0.61
LDLR-211ENST00000560173 ATAD5Q96QE3 1844 aa11.21□□□□□ -0.61
LDLR-211ENST00000560173 A0A0G2JLL6 359 aaPredicted RBP11.21□□□□□ -0.61
LDLR-211ENST00000560173 USP17L5A8MUK1 530 aa11.21□□□□□ -0.61
LDLR-211ENST00000560173 FOXP2O15409 715 aa11.21□□□□□ -0.61
LDLR-211ENST00000560173 SDSP20132 328 aa11.21□□□□□ -0.61
LDLR-211ENST00000560173 NMIQ13287 307 aaPredicted RBP11.21□□□□□ -0.61
LDLR-211ENST00000560173 SBK1Q52WX2 424 aa11.21□□□□□ -0.61
LDLR-211ENST00000560173 OTUD7BQ6GQQ9 843 aa11.21□□□□□ -0.61
LDLR-211ENST00000560173 PRRT2Q7Z6L0 340 aaPredicted RBP11.21□□□□□ -0.61
LDLR-211ENST00000560173 AMOTL1Q8IY63 956 aa11.21□□□□□ -0.61
LDLR-211ENST00000560173 FAM43AQ8N2R8 423 aa11.21□□□□□ -0.61
LDLR-211ENST00000560173 SLC44A5Q8NCS7 719 aa11.21□□□□□ -0.61
LDLR-211ENST00000560173 DYNLL2Q96FJ2 89 aa11.21□□□□□ -0.61
LDLR-211ENST00000560173 TBC1D2Q9BYX2 928 aa11.21□□□□□ -0.61
LDLR-211ENST00000560173 SWAP70Q9UH65 585 aa11.21□□□□□ -0.61
LDLR-211ENST00000560173 ROBO3Q96MS0 1386 aa11.2□□□□□ -0.62
LDLR-211ENST00000560173 PTPRFP10586 1907 aa11.2□□□□□ -0.62
LDLR-211ENST00000560173 TRIM75PA6NK02 468 aa11.2□□□□□ -0.62
LDLR-211ENST00000560173 PATL2C9JE40 543 aaKnown RBP11.2□□□□□ -0.62
LDLR-211ENST00000560173 BTBD19C9JJ37 291 aa11.2□□□□□ -0.62
LDLR-211ENST00000560173 TBC1D8O95759 1140 aa11.2□□□□□ -0.62
LDLR-211ENST00000560173 GH2P01242 217 aa11.2□□□□□ -0.62
LDLR-211ENST00000560173 TDO2P48775 406 aa11.2□□□□□ -0.62
LDLR-211ENST00000560173 CERKLQ49MI3 558 aaPredicted RBP11.2□□□□□ -0.62
LDLR-211ENST00000560173 MCMDC2Q4G0Z9 681 aa11.2□□□□□ -0.62
LDLR-211ENST00000560173 C16orf86Q6ZW13 317 aa11.2□□□□□ -0.62
LDLR-211ENST00000560173 IFNL3Q8IZI9 196 aa11.2□□□□□ -0.62
LDLR-211ENST00000560173 ZNF280CQ8ND82 737 aa11.2□□□□□ -0.62
LDLR-211ENST00000560173 CCDC136Q96JN2 1154 aa11.2□□□□□ -0.62
LDLR-211ENST00000560173 WDR18Q9BV38 432 aa11.2□□□□□ -0.62
LDLR-211ENST00000560173 NACAP1Q9BZK3 213 aa11.2□□□□□ -0.62
LDLR-211ENST00000560173 R3HDMLQ9H3Y0 253 aa11.2□□□□□ -0.62
LDLR-211ENST00000560173 ZCCHC17Q9NP64 241 aaKnown RBP11.2□□□□□ -0.62
LDLR-211ENST00000560173 APPP05067 770 aa11.19□□□□□ -0.62
LDLR-211ENST00000560173 CDK8P49336 464 aa11.19□□□□□ -0.62
LDLR-211ENST00000560173 SPP2Q13103 211 aa11.19□□□□□ -0.62
LDLR-211ENST00000560173 CRHR2Q13324 411 aa11.19□□□□□ -0.62
LDLR-211ENST00000560173 ABCB5Q2M3G0 1257 aa11.19□□□□□ -0.62
LDLR-211ENST00000560173 NOM1Q5C9Z4 860 aaKnown RBP11.19□□□□□ -0.62
LDLR-211ENST00000560173 VPS53Q5VIR6 699 aa11.19□□□□□ -0.62
LDLR-211ENST00000560173 ANKRD23Q86SG2 305 aa11.19□□□□□ -0.62
LDLR-211ENST00000560173 ZNF589Q86UQ0 364 aaPredicted RBP11.19□□□□□ -0.62
LDLR-211ENST00000560173 AS3MTQ9HBK9 375 aa11.19□□□□□ -0.62
LDLR-211ENST00000560173 DIAPH3Q9NSV4 1193 aa11.19□□□□□ -0.62
LDLR-211ENST00000560173 CCDC171Q6TFL3 1326 aa11.18□□□□□ -0.62
LDLR-211ENST00000560173 MINDY4BA8MYZ0 360 aa11.18□□□□□ -0.62
LDLR-211ENST00000560173 HIP1O00291 1037 aa11.18□□□□□ -0.62
LDLR-211ENST00000560173 AKR1B1P15121 316 aa11.18□□□□□ -0.62
LDLR-211ENST00000560173 GUCY1A2P33402 732 aa11.18□□□□□ -0.62
LDLR-211ENST00000560173 TAF1CQ15572 869 aaPredicted RBP11.18□□□□□ -0.62
LDLR-211ENST00000560173 GPAT2Q6NUI2 795 aa11.18□□□□□ -0.62
LDLR-211ENST00000560173 FASTKD5Q7L8L6 764 aaKnown RBP11.18□□□□□ -0.62
LDLR-211ENST00000560173 SKAP1Q86WV1 359 aa11.18□□□□□ -0.62
LDLR-211ENST00000560173 NAPBQ9H115 298 aa11.18□□□□□ -0.62
LDLR-211ENST00000560173 LOC285556D6RIA3 1793 aa11.18□□□□□ -0.62
LDLR-211ENST00000560173 GPR25O00155 361 aa11.17□□□□□ -0.62
LDLR-211ENST00000560173 PDHXO00330 501 aa11.17□□□□□ -0.62
LDLR-211ENST00000560173 HMGCS2P54868 508 aa11.17□□□□□ -0.62
LDLR-211ENST00000560173 BACE1P56817 501 aa11.17□□□□□ -0.62
LDLR-211ENST00000560173 MTMR2Q13614 643 aa11.17□□□□□ -0.62
LDLR-211ENST00000560173 SEPT2Q15019 361 aa11.17□□□□□ -0.62
LDLR-211ENST00000560173 RAB3GAP1Q15042 981 aa11.17□□□□□ -0.62
LDLR-211ENST00000560173 ALX1Q15699 326 aa11.17□□□□□ -0.62
LDLR-211ENST00000560173 SH3D19Q5HYK7 790 aa11.17□□□□□ -0.62
LDLR-211ENST00000560173 CWC27Q6UX04 472 aaKnown RBP11.17□□□□□ -0.62
LDLR-211ENST00000560173 GADL1Q6ZQY3 521 aa11.17□□□□□ -0.62
LDLR-211ENST00000560173 TMEM179Q6ZVK1 233 aa11.17□□□□□ -0.62
LDLR-211ENST00000560173 PROCA1Q8NCQ7 364 aaPredicted RBP11.17□□□□□ -0.62
LDLR-211ENST00000560173 ZNF296Q8WUU4 475 aaPredicted RBP11.17□□□□□ -0.62
LDLR-211ENST00000560173 CCDC17Q96LX7 622 aa11.17□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 20.6 ms