RNA–Protein interactions for RNA: ENST00000547394.6

CUX1-212, Transcript of cut like homeobox 1, humanhuman

TSL 2 BASIC

Gene CUX1, Length 2,878 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-212ENST00000547394 CATIPQ7Z7H3 387 aa12.81□□□□□ -0.36
CUX1-212ENST00000547394 NOSTRINQ8IVI9 506 aa12.81□□□□□ -0.36
CUX1-212ENST00000547394 TDRD7Q8NHU6 1098 aaKnown RBP12.81□□□□□ -0.36
CUX1-212ENST00000547394 MAP3K14Q99558 947 aa12.81□□□□□ -0.36
CUX1-212ENST00000547394 ANAPC4Q9UJX5 808 aa12.81□□□□□ -0.36
CUX1-212ENST00000547394 GGA1Q9UJY5 639 aa12.81□□□□□ -0.36
CUX1-212ENST00000547394 SEMA3EO15041 775 aa12.81□□□□□ -0.36
CUX1-212ENST00000547394 TROAPQ12815 778 aa12.81□□□□□ -0.36
CUX1-212ENST00000547394 PTPAQ15257 358 aa12.81□□□□□ -0.36
CUX1-212ENST00000547394 PTPN21Q16825 1174 aa12.81□□□□□ -0.36
CUX1-212ENST00000547394 MFSD14BQ5SR56 506 aa12.81□□□□□ -0.36
CUX1-212ENST00000547394 USP49Q70CQ1 688 aa12.81□□□□□ -0.36
CUX1-212ENST00000547394 ZNF804AQ7Z570 1209 aa12.81□□□□□ -0.36
CUX1-212ENST00000547394 COL23A1Q86Y22 540 aaPredicted RBP12.81□□□□□ -0.36
CUX1-212ENST00000547394 YEATS4O95619 227 aa12.8□□□□□ -0.36
CUX1-212ENST00000547394 GOLGA8HP0CJ92 632 aa12.8□□□□□ -0.36
CUX1-212ENST00000547394 PTGS1P23219 599 aa12.8□□□□□ -0.36
CUX1-212ENST00000547394 GTF2IP78347 998 aa12.8□□□□□ -0.36
CUX1-212ENST00000547394 LRMPQ12912 555 aa12.8□□□□□ -0.36
CUX1-212ENST00000547394 PKN1Q16512 942 aa12.8□□□□□ -0.36
CUX1-212ENST00000547394 GRAMD1CQ8IYS0 662 aa12.8□□□□□ -0.36
CUX1-212ENST00000547394 SRBD1Q8N5C6 995 aaKnown RBP12.8□□□□□ -0.36
CUX1-212ENST00000547394 AOPEPQ8N6M6 819 aa12.8□□□□□ -0.36
CUX1-212ENST00000547394 U2AF2P26368 475 aaKnown RBP eCLIP12.8□□□□□ -0.361e-7■■■■■ 27.9
CUX1-212ENST00000547394 BTDP43251 543 aa12.8□□□□□ -0.36
CUX1-212ENST00000547394 AKAP17AQ02040 695 aaKnown RBP12.8□□□□□ -0.36
CUX1-212ENST00000547394 PICALMQ13492 652 aa12.8□□□□□ -0.36
CUX1-212ENST00000547394 PNOCQ13519 176 aa12.8□□□□□ -0.36
CUX1-212ENST00000547394 HSP90AA4PQ58FG1 418 aa12.8□□□□□ -0.36
CUX1-212ENST00000547394 STAG2Q8N3U4 1231 aa12.8□□□□□ -0.36
CUX1-212ENST00000547394 TBC1D16Q8TBP0 767 aa12.8□□□□□ -0.36
CUX1-212ENST00000547394 KCNF1Q9H3M0 494 aa12.8□□□□□ -0.36
CUX1-212ENST00000547394 STX8Q9UNK0 236 aa12.8□□□□□ -0.36
CUX1-212ENST00000547394 DDX52Q9Y2R4 599 aaKnown RBP eCLIP12.8□□□□□ -0.363e-7■■■□□ 17.9
CUX1-212ENST00000547394 DEXIO95424 95 aa12.79□□□□□ -0.36
CUX1-212ENST00000547394 ARID5BQ14865 1188 aa12.79□□□□□ -0.36
CUX1-212ENST00000547394 GPKOWQ92917 476 aaPredicted RBP eCLIP12.79□□□□□ -0.367e-6■□□□□ 10
CUX1-212ENST00000547394 KCNQ5Q9NR82 932 aa12.79□□□□□ -0.36
CUX1-212ENST00000547394 IL17RBQ9NRM6 502 aa12.79□□□□□ -0.36
CUX1-212ENST00000547394 LEMD3Q9Y2U8 911 aa12.79□□□□□ -0.36
CUX1-212ENST00000547394 COL24A1Q17RW2 1714 aa12.79□□□□□ -0.36
CUX1-212ENST00000547394 MYH15Q9Y2K3 1946 aa12.79□□□□□ -0.36
CUX1-212ENST00000547394 SAFBQ15424 915 aaKnown RBP eCLIP12.79□□□□□ -0.36
CUX1-212ENST00000547394 CRY2Q49AN0 593 aa12.79□□□□□ -0.36
CUX1-212ENST00000547394 CLEC10AQ8IUN9 316 aa12.79□□□□□ -0.36
CUX1-212ENST00000547394 RBM17Q96I25 401 aaKnown RBP12.79□□□□□ -0.36
CUX1-212ENST00000547394 MKNK2Q9HBH9 465 aa12.79□□□□□ -0.36
CUX1-212ENST00000547394 PYCARDQ9ULZ3 195 aa12.79□□□□□ -0.36
CUX1-212ENST00000547394 LY75O60449 1722 aa12.79□□□□□ -0.36
CUX1-212ENST00000547394 SYKP43405 635 aa12.79□□□□□ -0.36
CUX1-212ENST00000547394 SCNN1DP51172 638 aa12.79□□□□□ -0.36
CUX1-212ENST00000547394 FUT2Q10981 343 aa12.79□□□□□ -0.36
CUX1-212ENST00000547394 IQCB1Q15051 598 aa12.79□□□□□ -0.36
CUX1-212ENST00000547394 ATL3Q6DD88 541 aa12.79□□□□□ -0.36
CUX1-212ENST00000547394 RCSD1Q6JBY9 416 aa12.79□□□□□ -0.36
CUX1-212ENST00000547394 WDR66Q8TBY9 1149 aa12.79□□□□□ -0.36
CUX1-212ENST00000547394 RASGRP4Q8TDF6 673 aa12.79□□□□□ -0.36
CUX1-212ENST00000547394 R3HCC1Q9Y3T6 440 aaKnown RBP12.79□□□□□ -0.36
CUX1-212ENST00000547394 BECN2A8MW95 431 aa12.78□□□□□ -0.36
CUX1-212ENST00000547394 STX1AQ16623 288 aa12.78□□□□□ -0.36
CUX1-212ENST00000547394 LONRF3Q496Y0 759 aa12.78□□□□□ -0.36
CUX1-212ENST00000547394 TMTC2Q8N394 836 aa12.78□□□□□ -0.36
CUX1-212ENST00000547394 ATP8A2Q9NTI2 1148 aa12.78□□□□□ -0.36
CUX1-212ENST00000547394 TIAM2Q8IVF5 1701 aa12.78□□□□□ -0.36
CUX1-212ENST00000547394 DUOX1Q9NRD9 1551 aa12.78□□□□□ -0.36
CUX1-212ENST00000547394 GOLGA6L19H0YKK7 550 aa12.78□□□□□ -0.36
CUX1-212ENST00000547394 SLC3A2P08195 630 aaKnown RBP12.78□□□□□ -0.36
CUX1-212ENST00000547394 MMP10P09238 476 aa12.78□□□□□ -0.36
CUX1-212ENST00000547394 EIF6P56537 245 aaKnown RBP12.78□□□□□ -0.36
CUX1-212ENST00000547394 CCDC186Q7Z3E2 898 aa12.78□□□□□ -0.36
CUX1-212ENST00000547394 DHX40Q8IX18 779 aaKnown RBP12.78□□□□□ -0.36
CUX1-212ENST00000547394 ECM29Q5VYK3 1845 aa12.77□□□□□ -0.36
CUX1-212ENST00000547394 ZNF831Q5JPB2 1677 aa12.77□□□□□ -0.36
CUX1-212ENST00000547394 CCDC196A0A1B0GTZ2 297 aa12.77□□□□□ -0.36
CUX1-212ENST00000547394 A0A1W2PQ27 194 aa12.77□□□□□ -0.36
CUX1-212ENST00000547394 A0A1W2PQ64 194 aa12.77□□□□□ -0.36
CUX1-212ENST00000547394 A0A1W2PQD8 194 aa12.77□□□□□ -0.36
CUX1-212ENST00000547394 ADRA2BP18089 450 aa12.77□□□□□ -0.36
CUX1-212ENST00000547394 CASP1P29466 404 aa12.77□□□□□ -0.36
CUX1-212ENST00000547394 PDE4BQ07343 736 aa12.77□□□□□ -0.36
CUX1-212ENST00000547394 ZNF174Q15697 407 aa12.77□□□□□ -0.36
CUX1-212ENST00000547394 C12orf60Q5U649 245 aa12.77□□□□□ -0.36
CUX1-212ENST00000547394 SPTY2D1Q68D10 685 aaPredicted RBP12.77□□□□□ -0.36
CUX1-212ENST00000547394 TEX11Q8IYF3 940 aa12.77□□□□□ -0.36
CUX1-212ENST00000547394 RTFDC1Q9BY42 306 aaPredicted RBP12.77□□□□□ -0.36
CUX1-212ENST00000547394 KIAA1468Q9P260 1216 aa12.77□□□□□ -0.36
CUX1-212ENST00000547394 PCDHAC2Q9Y5I4 1007 aa12.77□□□□□ -0.36
CUX1-212ENST00000547394 CMA1P23946 247 aa12.77□□□□□ -0.37
CUX1-212ENST00000547394 CCDC144BQ3MJ40 725 aa12.77□□□□□ -0.37
CUX1-212ENST00000547394 ZNF622Q969S3 477 aaKnown RBP eCLIP12.77□□□□□ -0.371e-7■■□□□ 13.1
CUX1-212ENST00000547394 ARPP21Q9UBL0 812 aaPredicted RBP12.77□□□□□ -0.37
CUX1-212ENST00000547394 STK36Q9NRP7 1315 aa12.76□□□□□ -0.37
CUX1-212ENST00000547394 PPEF1O14829 653 aaPredicted RBP12.76□□□□□ -0.37
CUX1-212ENST00000547394 ZNF75DP51815 510 aa12.76□□□□□ -0.37
CUX1-212ENST00000547394 ZRSR1Q15695 479 aaKnown RBP12.76□□□□□ -0.37
CUX1-212ENST00000547394 HS1BP3Q53T59 392 aa12.76□□□□□ -0.37
CUX1-212ENST00000547394 TMTC3Q6ZXV5 915 aa12.76□□□□□ -0.37
CUX1-212ENST00000547394 CTCFLQ8NI51 663 aaPredicted RBP12.76□□□□□ -0.37
CUX1-212ENST00000547394 MKRN1Q9UHC7 482 aaKnown RBP12.76□□□□□ -0.37
CUX1-212ENST00000547394 TSPY3P0CV98 308 aa12.76□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 44.6 ms