RNA–Protein interactions for RNA: ENST00000544967.5

USP28-213, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 1 (best) BASIC

Gene USP28, Length 3,498 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-213ENST00000544967 LUZP1Q86V48 1076 aa6.03□□□□□ -1.44
USP28-213ENST00000544967 NAT10Q9H0A0 1025 aaKnown RBP6.03□□□□□ -1.44
USP28-213ENST00000544967 SNRKQ9NRH2 765 aa6.03□□□□□ -1.44
USP28-213ENST00000544967 ANO10Q9NW15 660 aa6.03□□□□□ -1.44
USP28-213ENST00000544967 PALD1Q9ULE6 856 aa6.03□□□□□ -1.44
USP28-213ENST00000544967 RBM47A0AV96 593 aaKnown RBP6.03□□□□□ -1.44
USP28-213ENST00000544967 ELL2O00472 640 aaPredicted RBP6.03□□□□□ -1.44
USP28-213ENST00000544967 GNAI3P08754 354 aa6.03□□□□□ -1.44
USP28-213ENST00000544967 FGFR2P21802 821 aa6.03□□□□□ -1.44
USP28-213ENST00000544967 SCP2P22307 547 aa6.03□□□□□ -1.44
USP28-213ENST00000544967 PRELPP51888 382 aa6.03□□□□□ -1.44
USP28-213ENST00000544967 FKBP1AP62942 108 aaKnown RBP6.03□□□□□ -1.44
USP28-213ENST00000544967 ANKRD1Q15327 319 aa6.03□□□□□ -1.44
USP28-213ENST00000544967 ERCC6LQ2NKX8 1250 aa6.03□□□□□ -1.44
USP28-213ENST00000544967 EPHA10Q5JZY3 1008 aa6.03□□□□□ -1.44
USP28-213ENST00000544967 NEK11Q8NG66 645 aa6.03□□□□□ -1.44
USP28-213ENST00000544967 SUCLG2Q96I99 432 aa6.03□□□□□ -1.44
USP28-213ENST00000544967 SPOCK3Q9BQ16 436 aa6.03□□□□□ -1.44
USP28-213ENST00000544967 GDPD2Q9HCC8 539 aa6.03□□□□□ -1.44
USP28-213ENST00000544967 GPR108Q9NPR9 543 aa6.03□□□□□ -1.44
USP28-213ENST00000544967 ADAM21Q9UKJ8 722 aa6.03□□□□□ -1.44
USP28-213ENST00000544967 RAB21Q9UL25 225 aa6.03□□□□□ -1.44
USP28-213ENST00000544967 WDR3Q9UNX4 943 aaKnown RBP eCLIP6.03□□□□□ -1.44
USP28-213ENST00000544967 ZNF804BA4D1E1 1349 aa6.03□□□□□ -1.44
USP28-213ENST00000544967 SIPA1L1O43166 1804 aa6.03□□□□□ -1.44
USP28-213ENST00000544967 COL1A1P02452 1464 aaPredicted RBP6.03□□□□□ -1.44
USP28-213ENST00000544967 A6NNZ2 444 aa6.02□□□□□ -1.44
USP28-213ENST00000544967 H0YIN7 160 aa6.02□□□□□ -1.44
USP28-213ENST00000544967 NFKBIEO00221 500 aa6.02□□□□□ -1.44
USP28-213ENST00000544967 FIBPO43427 364 aa6.02□□□□□ -1.44
USP28-213ENST00000544967 NBPF7P0C2Y1 421 aaPredicted RBP6.02□□□□□ -1.44
USP28-213ENST00000544967 TUBB8Q3ZCM7 444 aa6.02□□□□□ -1.44
USP28-213ENST00000544967 CCDC152Q4G0S7 254 aa6.02□□□□□ -1.44
USP28-213ENST00000544967 E4F1Q66K89 784 aaPredicted RBP6.02□□□□□ -1.44
USP28-213ENST00000544967 PRPF40BQ6NWY9 871 aaKnown RBP6.02□□□□□ -1.44
USP28-213ENST00000544967 TTC6Q86TZ1 520 aa6.02□□□□□ -1.44
USP28-213ENST00000544967 C2CD5Q86YS7 1000 aa6.02□□□□□ -1.44
USP28-213ENST00000544967 C10orf67Q8IYJ2 551 aa6.02□□□□□ -1.44
USP28-213ENST00000544967 GTF3C6Q969F1 213 aa6.02□□□□□ -1.44
USP28-213ENST00000544967 CHAMP1Q96JM3 812 aa6.02□□□□□ -1.44
USP28-213ENST00000544967 FUT8Q9BYC5 575 aa6.02□□□□□ -1.44
USP28-213ENST00000544967 GBP3Q9H0R5 595 aa6.02□□□□□ -1.44
USP28-213ENST00000544967 ACBD3Q9H3P7 528 aa6.02□□□□□ -1.44
USP28-213ENST00000544967 CXorf56Q9H5V9 222 aa6.02□□□□□ -1.44
USP28-213ENST00000544967 VIPAS39Q9H9C1 493 aa6.02□□□□□ -1.44
USP28-213ENST00000544967 IVNS1ABPQ9Y6Y0 642 aa6.02□□□□□ -1.44
USP28-213ENST00000544967 MYO5AQ9Y4I1 1855 aaKnown RBP6.02□□□□□ -1.45
USP28-213ENST00000544967 CCDC194A0A1B0GVG4 234 aa6.02□□□□□ -1.45
USP28-213ENST00000544967 F6X3S4 739 aa6.02□□□□□ -1.45
USP28-213ENST00000544967 OTUD6BQ8N6M0 293 aa6.02□□□□□ -1.45
USP28-213ENST00000544967 TTLL6Q8N841 843 aa6.02□□□□□ -1.45
USP28-213ENST00000544967 FAM71BQ8TC56 605 aa6.02□□□□□ -1.45
USP28-213ENST00000544967 ZNF512BQ96KM6 892 aaPredicted RBP6.02□□□□□ -1.45
USP28-213ENST00000544967 NLRP3Q96P20 1036 aa6.02□□□□□ -1.45
USP28-213ENST00000544967 ZSWIM6Q9HCJ5 1215 aa6.02□□□□□ -1.45
USP28-213ENST00000544967 ST7Q9NRC1 585 aa6.02□□□□□ -1.45
USP28-213ENST00000544967 NRBP1Q9UHY1 535 aa6.02□□□□□ -1.45
USP28-213ENST00000544967 TRMT112Q9UI30 125 aaKnown RBP6.02□□□□□ -1.45
USP28-213ENST00000544967 SNX14Q9Y5W7 946 aa6.02□□□□□ -1.45
USP28-213ENST00000544967 EIF3CLB5ME19 914 aaKnown RBP6.02□□□□□ -1.45
USP28-213ENST00000544967 ZSCAN12O43309 604 aa6.02□□□□□ -1.45
USP28-213ENST00000544967 GRIN3BO60391 1043 aa6.02□□□□□ -1.45
USP28-213ENST00000544967 FKBP4Q02790 459 aaKnown RBP eCLIP6.02□□□□□ -1.45
USP28-213ENST00000544967 DNM1Q05193 864 aaKnown RBP6.02□□□□□ -1.45
USP28-213ENST00000544967 KCNA1Q09470 495 aa6.02□□□□□ -1.45
USP28-213ENST00000544967 DALRD3Q5D0E6 543 aaKnown RBP6.02□□□□□ -1.45
USP28-213ENST00000544967 RUFY3Q7L099 469 aa6.02□□□□□ -1.45
USP28-213ENST00000544967 NUTM1Q86Y26 1132 aa6.02□□□□□ -1.45
USP28-213ENST00000544967 RTKN2Q8IZC4 609 aa6.02□□□□□ -1.45
USP28-213ENST00000544967 MSANTD4Q8NCY6 345 aa6.02□□□□□ -1.45
USP28-213ENST00000544967 BANK1Q8NDB2 785 aa6.02□□□□□ -1.45
USP28-213ENST00000544967 TBC1D22AQ8WUA7 517 aa6.02□□□□□ -1.45
USP28-213ENST00000544967 EIF3CQ99613 913 aaKnown RBP6.02□□□□□ -1.45
USP28-213ENST00000544967 LRRCC1Q9C099 1032 aa6.02□□□□□ -1.45
USP28-213ENST00000544967 TMX1Q9H3N1 280 aa6.02□□□□□ -1.45
USP28-213ENST00000544967 COL2A1P02458 1487 aaPredicted RBP6.02□□□□□ -1.45
USP28-213ENST00000544967 USP27XA6NNY8 438 aa6.01□□□□□ -1.45
USP28-213ENST00000544967 SND1Q7KZF4 910 aaKnown RBP eCLIP6.01□□□□□ -1.45
USP28-213ENST00000544967 ATG9AQ7Z3C6 839 aa6.01□□□□□ -1.45
USP28-213ENST00000544967 PACS2Q86VP3 889 aa6.01□□□□□ -1.45
USP28-213ENST00000544967 SPATS2Q86XZ4 545 aaKnown RBP6.01□□□□□ -1.45
USP28-213ENST00000544967 C16orf71Q8IYS4 520 aaPredicted RBP6.01□□□□□ -1.45
USP28-213ENST00000544967 LSG1Q9H089 658 aaKnown RBP6.01□□□□□ -1.45
USP28-213ENST00000544967 MROH5Q6ZUA9 1318 aa6.01□□□□□ -1.45
USP28-213ENST00000544967 GREB1LQ9C091 1923 aaPredicted RBP6.01□□□□□ -1.45
USP28-213ENST00000544967 ATP5J2-PTCD1G3V325 749 aa6.01□□□□□ -1.45
USP28-213ENST00000544967 PPEF1O14829 653 aaPredicted RBP6.01□□□□□ -1.45
USP28-213ENST00000544967 SRGAP3O43295 1099 aa6.01□□□□□ -1.45
USP28-213ENST00000544967 GJB2P29033 226 aa6.01□□□□□ -1.45
USP28-213ENST00000544967 AK2P54819 239 aa6.01□□□□□ -1.45
USP28-213ENST00000544967 MAP3K9P80192 1104 aa6.01□□□□□ -1.45
USP28-213ENST00000544967 PTPN12Q05209 780 aaKnown RBP6.01□□□□□ -1.45
USP28-213ENST00000544967 AIMP1Q12904 312 aaKnown RBP6.01□□□□□ -1.45
USP28-213ENST00000544967 DDX46Q7L014 1031 aaKnown RBP6.01□□□□□ -1.45
USP28-213ENST00000544967 TADA2BQ86TJ2 420 aa6.01□□□□□ -1.45
USP28-213ENST00000544967 SYNE4Q8N205 404 aa6.01□□□□□ -1.45
USP28-213ENST00000544967 FAM89AQ96GI7 184 aa6.01□□□□□ -1.45
USP28-213ENST00000544967 L3MBTL3Q96JM7 780 aaPredicted RBP6.01□□□□□ -1.45
USP28-213ENST00000544967 ANO2Q9NQ90 1003 aa6.01□□□□□ -1.45
USP28-213ENST00000544967 UTP3Q9NQZ2 479 aaKnown RBP eCLIP6.01□□□□□ -1.457e-8■■■■■ 186.3
Retrieved 100 of 20,778 RNA–protein pairs in 37 ms