RNA–Protein interactions for RNA: ENST00000538456.3

SMARCA4-206, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4, humanhuman

TSL 3

Gene SMARCA4, Length 738 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCA4-206ENST00000538456 UNC80Q8N2C7 3258 aa17.23■□□□□ 0.35
SMARCA4-206ENST00000538456 GDF11O95390 407 aa17.23■□□□□ 0.35
SMARCA4-206ENST00000538456 CT47B1P0C2W7 299 aaPredicted RBP17.23■□□□□ 0.35
SMARCA4-206ENST00000538456 ZKSCAN1P17029 563 aaPredicted RBP17.23■□□□□ 0.35
SMARCA4-206ENST00000538456 PDE3AQ14432 1141 aa17.23■□□□□ 0.35
SMARCA4-206ENST00000538456 MAP3K21Q5TCX8 1036 aa17.23■□□□□ 0.35
SMARCA4-206ENST00000538456 TDHQ8IZJ6 230 aa17.23■□□□□ 0.35
SMARCA4-206ENST00000538456 TGFBRAP1Q8WUH2 860 aa17.23■□□□□ 0.35
SMARCA4-206ENST00000538456 PAGR1Q9BTK6 254 aa17.23■□□□□ 0.35
SMARCA4-206ENST00000538456 TRIM34Q9BYJ4 488 aa17.23■□□□□ 0.35
SMARCA4-206ENST00000538456 UBE2OQ9C0C9 1292 aaKnown RBP17.23■□□□□ 0.35
SMARCA4-206ENST00000538456 DNAJC18Q9H819 358 aa17.23■□□□□ 0.35
SMARCA4-206ENST00000538456 SNRKQ9NRH2 765 aa17.23■□□□□ 0.35
SMARCA4-206ENST00000538456 FRMPD3Q5JV73 1810 aa17.23■□□□□ 0.35
SMARCA4-206ENST00000538456 DNAH12Q6ZR08 3092 aa17.22■□□□□ 0.35
SMARCA4-206ENST00000538456 UQCRFS1P1P0C7P4 283 aa17.22■□□□□ 0.35
SMARCA4-206ENST00000538456 HOXA7P31268 230 aaPredicted RBP17.22■□□□□ 0.35
SMARCA4-206ENST00000538456 NAA16Q6N069 864 aaPredicted RBP17.22■□□□□ 0.35
SMARCA4-206ENST00000538456 GPR153Q6NV75 609 aa17.22■□□□□ 0.35
SMARCA4-206ENST00000538456 CCAR1Q8IX12 1150 aaKnown RBP17.22■□□□□ 0.35
SMARCA4-206ENST00000538456 CRACR2BQ8N4Y2 399 aaPredicted RBP17.22■□□□□ 0.35
SMARCA4-206ENST00000538456 DHX36Q9H2U1 1008 aaKnown RBP17.22■□□□□ 0.35
SMARCA4-206ENST00000538456 PALD1Q9ULE6 856 aa17.22■□□□□ 0.35
SMARCA4-206ENST00000538456 FLT1P17948 1338 aa17.21■□□□□ 0.35
SMARCA4-206ENST00000538456 PNMA6EA0A0J9YXQ4 647 aa17.21■□□□□ 0.35
SMARCA4-206ENST00000538456 USP17L10C9JJH3 530 aa17.21■□□□□ 0.35
SMARCA4-206ENST00000538456 BAG3O95817 575 aa17.21■□□□□ 0.35
SMARCA4-206ENST00000538456 XRCC5P13010 732 aaKnown RBP17.21■□□□□ 0.35
SMARCA4-206ENST00000538456 CCND3P30281 292 aaPredicted RBP17.21■□□□□ 0.35
SMARCA4-206ENST00000538456 RARSP54136 660 aaKnown RBP17.21■□□□□ 0.35
SMARCA4-206ENST00000538456 CACNB2Q08289 660 aaPredicted RBP17.21■□□□□ 0.35
SMARCA4-206ENST00000538456 G3BP1Q13283 466 aaKnown RBP eCLIP17.21■□□□□ 0.35
SMARCA4-206ENST00000538456 CCL14Q16627 93 aa17.21■□□□□ 0.35
SMARCA4-206ENST00000538456 LRIT3Q3SXY7 679 aa17.21■□□□□ 0.35
SMARCA4-206ENST00000538456 ADGRA1Q86SQ6 560 aa17.21■□□□□ 0.35
SMARCA4-206ENST00000538456 PORCNQ9H237 461 aa17.21■□□□□ 0.35
SMARCA4-206ENST00000538456 RBPJLQ9UBG7 517 aa17.21■□□□□ 0.35
SMARCA4-206ENST00000538456 SAP30BPQ9UHR5 308 aaKnown RBP17.21■□□□□ 0.35
SMARCA4-206ENST00000538456 ZBTB21Q9ULJ3 1066 aa17.21■□□□□ 0.35
SMARCA4-206ENST00000538456 LAMA2P24043 3122 aaKnown RBP17.21■□□□□ 0.35
SMARCA4-206ENST00000538456 C19orf81C9J6K1 198 aa17.2■□□□□ 0.34
SMARCA4-206ENST00000538456 PLCG2P16885 1265 aa17.2■□□□□ 0.34
SMARCA4-206ENST00000538456 MAPK4P31152 587 aa17.2■□□□□ 0.34
SMARCA4-206ENST00000538456 ERVK-9P63128 1117 aa17.2■□□□□ 0.34
SMARCA4-206ENST00000538456 ERVK-24P63145 666 aa17.2■□□□□ 0.34
SMARCA4-206ENST00000538456 TTC39AQ5SRH9 613 aa17.2■□□□□ 0.34
SMARCA4-206ENST00000538456 GPR142Q7Z601 462 aa17.2■□□□□ 0.34
SMARCA4-206ENST00000538456 CWC22Q9HCG8 908 aaKnown RBP17.2■□□□□ 0.34
SMARCA4-206ENST00000538456 MYH1P12882 1939 aa17.19■□□□□ 0.34
SMARCA4-206ENST00000538456 GNAI2P04899 355 aa17.19■□□□□ 0.34
SMARCA4-206ENST00000538456 RGS2P41220 211 aa17.19■□□□□ 0.34
SMARCA4-206ENST00000538456 ZYXQ15942 572 aaKnown RBP17.19■□□□□ 0.34
SMARCA4-206ENST00000538456 LRRC26Q2I0M4 334 aa17.19■□□□□ 0.34
SMARCA4-206ENST00000538456 Q3C1V9 767 aa17.19■□□□□ 0.34
SMARCA4-206ENST00000538456 TRMT44Q8IYL2 757 aaKnown RBP17.19■□□□□ 0.34
SMARCA4-206ENST00000538456 APBA2Q99767 749 aa17.19■□□□□ 0.34
SMARCA4-206ENST00000538456 MTMR10Q9NXD2 777 aa17.19■□□□□ 0.34
SMARCA4-206ENST00000538456 TNNQ9UQP3 1299 aa17.19■□□□□ 0.34
SMARCA4-206ENST00000538456 COL6A1P12109 1028 aa17.18■□□□□ 0.34
SMARCA4-206ENST00000538456 MDM2Q00987 491 aaPredicted RBP17.18■□□□□ 0.34
SMARCA4-206ENST00000538456 POTEEQ6S8J3 1075 aa17.18■□□□□ 0.34
SMARCA4-206ENST00000538456 PLEKHH3Q7Z736 793 aa17.18■□□□□ 0.34
SMARCA4-206ENST00000538456 FOXP4Q8IVH2 680 aaPredicted RBP17.18■□□□□ 0.34
SMARCA4-206ENST00000538456 ARHGAP45Q92619 1136 aa17.18■□□□□ 0.34
SMARCA4-206ENST00000538456 USP6NLQ92738 828 aa17.18■□□□□ 0.34
SMARCA4-206ENST00000538456 EMILIN3Q9NT22 766 aa17.18■□□□□ 0.34
SMARCA4-206ENST00000538456 STXBP5LQ9Y2K9 1186 aa17.18■□□□□ 0.34
SMARCA4-206ENST00000538456 NDUFB9Q9Y6M9 179 aa17.18■□□□□ 0.34
SMARCA4-206ENST00000538456 HLA-DOAP06340 250 aa17.17■□□□□ 0.34
SMARCA4-206ENST00000538456 PPP4CP60510 307 aa17.17■□□□□ 0.34
SMARCA4-206ENST00000538456 MORN1Q5T089 497 aa17.17■□□□□ 0.34
SMARCA4-206ENST00000538456 LHX8Q68G74 356 aa17.17■□□□□ 0.34
SMARCA4-206ENST00000538456 METTL16Q86W50 562 aaKnown RBP17.17■□□□□ 0.34
SMARCA4-206ENST00000538456 FEZ1Q99689 392 aa17.17■□□□□ 0.34
SMARCA4-206ENST00000538456 DBNDD2Q9BQY9 259 aa17.17■□□□□ 0.34
SMARCA4-206ENST00000538456 GH2P01242 217 aa17.16■□□□□ 0.34
SMARCA4-206ENST00000538456 CYP2E1P05181 493 aaPredicted RBP17.16■□□□□ 0.34
SMARCA4-206ENST00000538456 TRIM27P14373 513 aa17.16■□□□□ 0.34
SMARCA4-206ENST00000538456 DYNLL1P63167 89 aaKnown RBP17.16■□□□□ 0.34
SMARCA4-206ENST00000538456 OS9Q13438 667 aaPredicted RBP17.16■□□□□ 0.34
SMARCA4-206ENST00000538456 TNNI3KQ59H18 835 aa17.16■□□□□ 0.34
SMARCA4-206ENST00000538456 CCDC158Q5M9N0 1113 aa17.16■□□□□ 0.34
SMARCA4-206ENST00000538456 WDR78Q5VTH9 848 aa17.16■□□□□ 0.34
SMARCA4-206ENST00000538456 USP17L2Q6R6M4 530 aa17.16■□□□□ 0.34
SMARCA4-206ENST00000538456 GTF3C2Q8WUA4 911 aaPredicted RBP17.16■□□□□ 0.34
SMARCA4-206ENST00000538456 FRAT1Q92837 279 aaPredicted RBP17.16■□□□□ 0.34
SMARCA4-206ENST00000538456 CLUAP1Q96AJ1 413 aa17.16■□□□□ 0.34
SMARCA4-206ENST00000538456 FPGT-TNNI3KV9GXZ4 949 aa17.16■□□□□ 0.34
SMARCA4-206ENST00000538456 MAP2K5Q13163 448 aa17.15■□□□□ 0.34
SMARCA4-206ENST00000538456 PIH1D3Q9NQM4 214 aaKnown RBP17.15■□□□□ 0.34
SMARCA4-206ENST00000538456 GINM1Q9NU53 330 aa17.15■□□□□ 0.34
SMARCA4-206ENST00000538456 ZAP70P43403 619 aa17.14■□□□□ 0.33
SMARCA4-206ENST00000538456 ATF7IPQ6VMQ6 1270 aa17.14■□□□□ 0.33
SMARCA4-206ENST00000538456 MIGA1Q8NAN2 632 aa17.14■□□□□ 0.33
SMARCA4-206ENST00000538456 SENP6Q9GZR1 1112 aaPredicted RBP17.14■□□□□ 0.33
SMARCA4-206ENST00000538456 FLRT1Q9NZU1 646 aa17.14■□□□□ 0.33
SMARCA4-206ENST00000538456 IPO8O15397 1037 aaKnown RBP17.13■□□□□ 0.33
SMARCA4-206ENST00000538456 CNMDO75829 334 aa17.13■□□□□ 0.33
SMARCA4-206ENST00000538456 CYP7A1P22680 504 aa17.13■□□□□ 0.33
SMARCA4-206ENST00000538456 CCNA1P78396 465 aa17.13■□□□□ 0.33
Retrieved 100 of 20,778 RNA–protein pairs in 71.2 ms