RNA–Protein interactions for RNA: ENST00000537551.5

CHFR-215, Transcript of checkpoint with forkhead and ring finger domains, human

TSL 2

Gene CHFR, Length 596 nt, Biotype processed transcript, Subcellular localisation Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CHFR-215	ENST00000537551	JAG1	P78504	1218 aa		27.9	■■■□□ 2.06
CHFR-215	ENST00000537551	MOGS	Q13724	837 aa		27.9	■■■□□ 2.06
CHFR-215	ENST00000537551	ZBTB21	Q9ULJ3	1066 aa		27.9	■■■□□ 2.06
CHFR-215	ENST00000537551	TRIM6-TRIM34	B2RNG4	842 aa		27.89	■■■□□ 2.06
CHFR-215	ENST00000537551	USP17L12	C9JPN9	530 aa		27.89	■■■□□ 2.06
CHFR-215	ENST00000537551	USP17L21	D6R901	530 aa		27.89	■■■□□ 2.06
CHFR-215	ENST00000537551	GPAA1	O43292	621 aa		27.89	■■■□□ 2.06
CHFR-215	ENST00000537551	CTU1	Q7Z7A3	348 aa	Known RBP	27.89	■■■□□ 2.06
CHFR-215	ENST00000537551	PLEKHM2	Q8IWE5	1019 aa		27.89	■■■□□ 2.06
CHFR-215	ENST00000537551	MCOLN1	Q9GZU1	580 aa		27.89	■■■□□ 2.06
CHFR-215	ENST00000537551		M0R2C6	588 aa		27.88	■■■□□ 2.05
CHFR-215	ENST00000537551	GH2	P01242	217 aa		27.88	■■■□□ 2.05
CHFR-215	ENST00000537551	EVX2	Q03828	476 aa		27.88	■■■□□ 2.05
CHFR-215	ENST00000537551	SHROOM1	Q2M3G4	852 aa	Predicted RBP	27.88	■■■□□ 2.05
CHFR-215	ENST00000537551	IFFO2	Q5TF58	517 aa		27.88	■■■□□ 2.05
CHFR-215	ENST00000537551	CABP5	Q9NP86	173 aa		27.88	■■■□□ 2.05
CHFR-215	ENST00000537551	ATAD5	Q96QE3	1844 aa		27.88	■■■□□ 2.05
CHFR-215	ENST00000537551	GNAT2	P19087	354 aa		27.87	■■■□□ 2.05
CHFR-215	ENST00000537551	SHMT1	P34896	483 aa		27.87	■■■□□ 2.05
CHFR-215	ENST00000537551	SP3	Q02447	781 aa		27.87	■■■□□ 2.05
CHFR-215	ENST00000537551	GABPA	Q06546	454 aa		27.87	■■■□□ 2.05
CHFR-215	ENST00000537551	ABCB5	Q2M3G0	1257 aa		27.87	■■■□□ 2.05
CHFR-215	ENST00000537551	GPAT2	Q6NUI2	795 aa		27.87	■■■□□ 2.05
CHFR-215	ENST00000537551	SEC62	Q99442	399 aa	Known RBP	27.87	■■■□□ 2.05
CHFR-215	ENST00000537551	WDR18	Q9BV38	432 aa		27.87	■■■□□ 2.05
CHFR-215	ENST00000537551	CYP2D7	A0A087X1C5	515 aa		27.86	■■■□□ 2.05
CHFR-215	ENST00000537551	TLR2	O60603	784 aa		27.86	■■■□□ 2.05
CHFR-215	ENST00000537551	APP	P05067	770 aa		27.86	■■■□□ 2.05
CHFR-215	ENST00000537551	ZMYM1	Q5SVZ6	1142 aa		27.86	■■■□□ 2.05
CHFR-215	ENST00000537551	C12orf60	Q5U649	245 aa		27.86	■■■□□ 2.05
CHFR-215	ENST00000537551	RILPL2	Q969X0	211 aa		27.86	■■■□□ 2.05
CHFR-215	ENST00000537551	DYNLL2	Q96FJ2	89 aa		27.86	■■■□□ 2.05
CHFR-215	ENST00000537551	SWAP70	Q9UH65	585 aa		27.86	■■■□□ 2.05
CHFR-215	ENST00000537551	PHIP	Q8WWQ0	1821 aa		27.85	■■■□□ 2.05
CHFR-215	ENST00000537551	DDX60L	Q5H9U9	1706 aa	Known RBP	27.85	■■■□□ 2.05
CHFR-215	ENST00000537551	GSG1L2	A8MUP6	293 aa		27.85	■■■□□ 2.05
CHFR-215	ENST00000537551	HMGCS2	P54868	508 aa		27.85	■■■□□ 2.05
CHFR-215	ENST00000537551	RAB3GAP1	Q15042	981 aa		27.85	■■■□□ 2.05
CHFR-215	ENST00000537551	CTR9	Q6PD62	1173 aa		27.85	■■■□□ 2.05
CHFR-215	ENST00000537551	ERO1A	Q96HE7	468 aa		27.85	■■■□□ 2.05
CHFR-215	ENST00000537551	MPHOSPH10	O00566	681 aa	Known RBP	27.84	■■■□□ 2.05
CHFR-215	ENST00000537551	GIMAP6	Q6P9H5	292 aa		27.84	■■■□□ 2.05
CHFR-215	ENST00000537551	SLC44A5	Q8NCS7	719 aa		27.84	■■■□□ 2.05
CHFR-215	ENST00000537551	PARK7	Q99497	189 aa	Known RBP	27.84	■■■□□ 2.05
CHFR-215	ENST00000537551	OSBPL3	Q9H4L5	887 aa		27.84	■■■□□ 2.05
CHFR-215	ENST00000537551	ARPP21	Q9UBL0	812 aa	Predicted RBP	27.84	■■■□□ 2.05
CHFR-215	ENST00000537551	BAZ2A	Q9UIF9	1905 aa	Known RBP	27.84	■■■□□ 2.05
CHFR-215	ENST00000537551	CAPN15	O75808	1086 aa		27.83	■■■□□ 2.05
CHFR-215	ENST00000537551	BACE1	P56817	501 aa		27.83	■■■□□ 2.05
CHFR-215	ENST00000537551	MTMR2	Q13614	643 aa		27.83	■■■□□ 2.05
CHFR-215	ENST00000537551	PROCA1	Q8NCQ7	364 aa	Predicted RBP	27.83	■■■□□ 2.05
CHFR-215	ENST00000537551	CD99L2	Q8TCZ2	262 aa		27.83	■■■□□ 2.05
CHFR-215	ENST00000537551	ABHD8	Q96I13	439 aa		27.83	■■■□□ 2.05
CHFR-215	ENST00000537551	TMOD4	Q9NZQ9	345 aa		27.83	■■■□□ 2.05
CHFR-215	ENST00000537551	TAOK2	Q9UL54	1235 aa		27.83	■■■□□ 2.05
CHFR-215	ENST00000537551	AGTPBP1	Q9UPW5	1226 aa		27.83	■■■□□ 2.05
CHFR-215	ENST00000537551	PATL2	C9JE40	543 aa	Known RBP	27.82	■■■□□ 2.04
CHFR-215	ENST00000537551	USP17L10	C9JJH3	530 aa		27.82	■■■□□ 2.04
CHFR-215	ENST00000537551	CYP2C8	P10632	490 aa		27.82	■■■□□ 2.04
CHFR-215	ENST00000537551	TDO2	P48775	406 aa		27.82	■■■□□ 2.04
CHFR-215	ENST00000537551	CPA4	Q9UI42	421 aa		27.82	■■■□□ 2.04
CHFR-215	ENST00000537551	SLC45A1	Q9Y2W3	748 aa		27.82	■■■□□ 2.04
CHFR-215	ENST00000537551	MINDY4B	A8MYZ0	360 aa		27.81	■■■□□ 2.04
CHFR-215	ENST00000537551	C19orf81	C9J6K1	198 aa		27.81	■■■□□ 2.04
CHFR-215	ENST00000537551	CDK8	P49336	464 aa		27.81	■■■□□ 2.04
CHFR-215	ENST00000537551	SH3D19	Q5HYK7	790 aa		27.81	■■■□□ 2.04
CHFR-215	ENST00000537551	TREML2	Q5T2D2	321 aa		27.81	■■■□□ 2.04
CHFR-215	ENST00000537551	NACAP1	Q9BZK3	213 aa		27.81	■■■□□ 2.04
CHFR-215	ENST00000537551	SMIM22	K7EJ46	135 aa		27.8	■■■□□ 2.04
CHFR-215	ENST00000537551	PABPC4	Q13310	644 aa	Known RBP eCLIP	27.8	■■■□□ 2.04
CHFR-215	ENST00000537551	PKN2	Q16513	984 aa	Known RBP	27.8	■■■□□ 2.04
CHFR-215	ENST00000537551	SBK1	Q52WX2	424 aa		27.8	■■■□□ 2.04
CHFR-215	ENST00000537551	TRIM17	Q9Y577	477 aa		27.8	■■■□□ 2.04
CHFR-215	ENST00000537551	PTPRF	P10586	1907 aa		27.79	■■■□□ 2.04
CHFR-215	ENST00000537551	C17orf99	Q6UX52	265 aa		27.79	■■■□□ 2.04
CHFR-215	ENST00000537551	CCDC129	Q6ZRS4	1044 aa		27.79	■■■□□ 2.04
CHFR-215	ENST00000537551	C16orf86	Q6ZW13	317 aa		27.79	■■■□□ 2.04
CHFR-215	ENST00000537551	IFNL3	Q8IZI9	196 aa		27.79	■■■□□ 2.04
CHFR-215	ENST00000537551	FEZ1	Q99689	392 aa		27.79	■■■□□ 2.04
CHFR-215	ENST00000537551	HELLS	Q9NRZ9	838 aa		27.79	■■■□□ 2.04
CHFR-215	ENST00000537551	KIF22	Q14807	665 aa		27.78	■■■□□ 2.04
CHFR-215	ENST00000537551	SEPT2	Q15019	361 aa		27.78	■■■□□ 2.04
CHFR-215	ENST00000537551	ARHGEF6	Q15052	776 aa		27.78	■■■□□ 2.04
CHFR-215	ENST00000537551	TICAM2	Q86XR7	235 aa		27.78	■■■□□ 2.04
CHFR-215	ENST00000537551	STK11IP	Q8N1F8	1099 aa		27.78	■■■□□ 2.04
CHFR-215	ENST00000537551	SMCR8	Q8TEV9	937 aa	Predicted RBP	27.78	■■■□□ 2.04
CHFR-215	ENST00000537551	EFCC1	Q9HA90	598 aa		27.78	■■■□□ 2.04
CHFR-215	ENST00000537551	EPB41L4A	Q9HCS5	686 aa	Predicted RBP	27.78	■■■□□ 2.04
CHFR-215	ENST00000537551	PNMA3	Q9UL41	463 aa		27.78	■■■□□ 2.04
CHFR-215	ENST00000537551	OSBP	P22059	807 aa		27.77	■■■□□ 2.04
CHFR-215	ENST00000537551	PDE4A	P27815	886 aa		27.77	■■■□□ 2.04
CHFR-215	ENST00000537551	USP17L2	Q6R6M4	530 aa		27.77	■■■□□ 2.04
CHFR-215	ENST00000537551	CCDC17	Q96LX7	622 aa		27.77	■■■□□ 2.04
CHFR-215	ENST00000537551	AKR1B1	P15121	316 aa		27.76	■■■□□ 2.03
CHFR-215	ENST00000537551	GUCY1A2	P33402	732 aa		27.76	■■■□□ 2.03
CHFR-215	ENST00000537551	ZYX	Q15942	572 aa	Known RBP	27.76	■■■□□ 2.03
CHFR-215	ENST00000537551	TMEM179	Q6ZVK1	233 aa		27.76	■■■□□ 2.03
CHFR-215	ENST00000537551	OTOP1	Q7RTM1	612 aa		27.76	■■■□□ 2.03
CHFR-215	ENST00000537551	FAM227B	Q96M60	508 aa		27.76	■■■□□ 2.03
CHFR-215	ENST00000537551	NAPB	Q9H115	298 aa		27.76	■■■□□ 2.03

Retrieved 100 of 20,778 RNA–protein pairs in 71.1 ms