RNA–Protein interactions for RNA: ENST00000493379.1

VPS52-219, Transcript of VPS52, GARP complex subunit, humanhuman

TSL 5

Gene VPS52, Length 786 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS52-219ENST00000493379 RAB11FIP3O75154 756 aa8.3□□□□□ -1.08
VPS52-219ENST00000493379 HMMRO75330 724 aa8.3□□□□□ -1.08
VPS52-219ENST00000493379 SURF6O75683 361 aaKnown RBP8.3□□□□□ -1.08
VPS52-219ENST00000493379 IFIT1P09914 478 aaKnown RBP8.3□□□□□ -1.08
VPS52-219ENST00000493379 HIBADHP31937 336 aaKnown RBP8.3□□□□□ -1.08
VPS52-219ENST00000493379 GMPSP49915 693 aaPredicted RBP8.3□□□□□ -1.08
VPS52-219ENST00000493379 ZNF280AP59817 542 aaPredicted RBP8.3□□□□□ -1.08
VPS52-219ENST00000493379 G3BP1Q13283 466 aaKnown RBP eCLIP8.3□□□□□ -1.08
VPS52-219ENST00000493379 PUS10Q3MIT2 529 aaKnown RBP8.3□□□□□ -1.08
VPS52-219ENST00000493379 NOM1Q5C9Z4 860 aaKnown RBP8.3□□□□□ -1.08
VPS52-219ENST00000493379 ZNF804AQ7Z570 1209 aa8.3□□□□□ -1.08
VPS52-219ENST00000493379 RETREG3Q86VR2 466 aa8.3□□□□□ -1.08
VPS52-219ENST00000493379 ZNF512BQ96KM6 892 aaPredicted RBP8.3□□□□□ -1.08
VPS52-219ENST00000493379 CDKN2AIPQ9NXV6 580 aaPredicted RBP8.3□□□□□ -1.08
VPS52-219ENST00000493379 SLC27A5Q9Y2P5 690 aa8.3□□□□□ -1.08
VPS52-219ENST00000493379 NCOR1O75376 2440 aa8.29□□□□□ -1.08
VPS52-219ENST00000493379 RAD17O75943 681 aa8.29□□□□□ -1.08
VPS52-219ENST00000493379 SLC5A1P13866 664 aa8.29□□□□□ -1.08
VPS52-219ENST00000493379 KCNJ4P48050 445 aa8.29□□□□□ -1.08
VPS52-219ENST00000493379 BCAMP50895 628 aa8.29□□□□□ -1.08
VPS52-219ENST00000493379 TIMM10P62072 90 aa8.29□□□□□ -1.08
VPS52-219ENST00000493379 TFCP2Q12800 502 aa8.29□□□□□ -1.08
VPS52-219ENST00000493379 HDAC1Q13547 482 aaPredicted RBP8.29□□□□□ -1.08
VPS52-219ENST00000493379 ATP2B3Q16720 1220 aa8.29□□□□□ -1.08
VPS52-219ENST00000493379 CAVIN4Q5BKX8 364 aa8.29□□□□□ -1.08
VPS52-219ENST00000493379 TTLL5Q6EMB2 1281 aa8.29□□□□□ -1.08
VPS52-219ENST00000493379 ERC1Q8IUD2 1116 aa8.29□□□□□ -1.08
VPS52-219ENST00000493379 CD99L2Q8TCZ2 262 aa8.29□□□□□ -1.08
VPS52-219ENST00000493379 EPS8L1Q8TE68 723 aa8.29□□□□□ -1.08
VPS52-219ENST00000493379 SHISA4Q96DD7 197 aa8.29□□□□□ -1.08
VPS52-219ENST00000493379 ZBED3Q96IU2 234 aaPredicted RBP8.29□□□□□ -1.08
VPS52-219ENST00000493379 SIL1Q9H173 461 aa8.29□□□□□ -1.08
VPS52-219ENST00000493379 SUGT1Q9Y2Z0 365 aa8.29□□□□□ -1.08
VPS52-219ENST00000493379 BDP1A6H8Y1 2624 aa8.29□□□□□ -1.08
VPS52-219ENST00000493379 MYO3BQ8WXR4 1341 aa8.29□□□□□ -1.08
VPS52-219ENST00000493379 A0A1B0GUL7 405 aa8.28□□□□□ -1.08
VPS52-219ENST00000493379 GYG1P46976 350 aa8.28□□□□□ -1.08
VPS52-219ENST00000493379 Q3C1V9 767 aa8.28□□□□□ -1.08
VPS52-219ENST00000493379 DESI1Q6ICB0 168 aa8.28□□□□□ -1.08
VPS52-219ENST00000493379 MOB2Q70IA6 237 aa8.28□□□□□ -1.08
VPS52-219ENST00000493379 KRT26Q7Z3Y9 468 aa8.28□□□□□ -1.08
VPS52-219ENST00000493379 RHPN1Q8TCX5 695 aa8.28□□□□□ -1.08
VPS52-219ENST00000493379 ADAMTS19Q8TE59 1207 aa8.28□□□□□ -1.08
VPS52-219ENST00000493379 FAM163AQ96GL9 167 aaPredicted RBP8.28□□□□□ -1.08
VPS52-219ENST00000493379 CRBNQ96SW2 442 aa8.28□□□□□ -1.08
VPS52-219ENST00000493379 PRR14Q9BWN1 585 aa8.28□□□□□ -1.08
VPS52-219ENST00000493379 CNOT7Q9UIV1 285 aaKnown RBP8.28□□□□□ -1.08
VPS52-219ENST00000493379 SALL1Q9NSC2 1324 aa8.28□□□□□ -1.08
VPS52-219ENST00000493379 ARID4AP29374 1257 aaPredicted RBP8.27□□□□□ -1.09
VPS52-219ENST00000493379 GTF2IP78347 998 aa8.27□□□□□ -1.09
VPS52-219ENST00000493379 HDLBPQ00341 1268 aaKnown RBP8.27□□□□□ -1.09
VPS52-219ENST00000493379 TNNI3KQ59H18 835 aa8.27□□□□□ -1.09
VPS52-219ENST00000493379 CCDC102BQ68D86 513 aa8.27□□□□□ -1.09
VPS52-219ENST00000493379 CERS5Q8N5B7 392 aa8.27□□□□□ -1.09
VPS52-219ENST00000493379 EAF2Q96CJ1 260 aaPredicted RBP8.27□□□□□ -1.09
VPS52-219ENST00000493379 KIF1BPQ96EK5 621 aa8.27□□□□□ -1.09
VPS52-219ENST00000493379 XAGE2Q96GT9 111 aa8.27□□□□□ -1.09
VPS52-219ENST00000493379 FPGT-TNNI3KV9GXZ4 949 aa8.27□□□□□ -1.09
VPS52-219ENST00000493379 SCN9AQ15858 1988 aa8.26□□□□□ -1.09
VPS52-219ENST00000493379 A0A1B0GUL6 1792 aa8.26□□□□□ -1.09
VPS52-219ENST00000493379 H7C1D1 291 aa8.26□□□□□ -1.09
VPS52-219ENST00000493379 EGFRP00533 1210 aa8.26□□□□□ -1.09
VPS52-219ENST00000493379 TM4SF4P48230 202 aa8.26□□□□□ -1.09
VPS52-219ENST00000493379 VAC14Q08AM6 782 aa8.26□□□□□ -1.09
VPS52-219ENST00000493379 NR6A1Q15406 480 aa8.26□□□□□ -1.09
VPS52-219ENST00000493379 MAFAQ8NHW3 353 aaPredicted RBP8.26□□□□□ -1.09
VPS52-219ENST00000493379 WDR66Q8TBY9 1149 aa8.26□□□□□ -1.09
VPS52-219ENST00000493379 PPIL4Q8WUA2 492 aaKnown RBP eCLIP8.26□□□□□ -1.09
VPS52-219ENST00000493379 TBC1D22AQ8WUA7 517 aa8.26□□□□□ -1.09
VPS52-219ENST00000493379 DENND2AQ9ULE3 1009 aa8.26□□□□□ -1.09
VPS52-219ENST00000493379 EXOC6BQ9Y2D4 811 aa8.26□□□□□ -1.09
VPS52-219ENST00000493379 NR2E3Q9Y5X4 410 aa8.26□□□□□ -1.09
VPS52-219ENST00000493379 PKD1L2Q7Z442 2459 aa8.25□□□□□ -1.09
VPS52-219ENST00000493379 ALPK3Q96L96 1907 aa8.25□□□□□ -1.09
VPS52-219ENST00000493379 SOWAHBA6NEL2 793 aa8.25□□□□□ -1.09
VPS52-219ENST00000493379 UQCRFS1P1P0C7P4 283 aa8.25□□□□□ -1.09
VPS52-219ENST00000493379 ADORA1P30542 326 aa8.25□□□□□ -1.09
VPS52-219ENST00000493379 PHKA1P46020 1223 aa8.25□□□□□ -1.09
VPS52-219ENST00000493379 TMED8Q6PL24 325 aaPredicted RBP8.25□□□□□ -1.09
VPS52-219ENST00000493379 RNF19BQ6ZMZ0 732 aa8.25□□□□□ -1.09
VPS52-219ENST00000493379 SMC5Q8IY18 1101 aa8.25□□□□□ -1.09
VPS52-219ENST00000493379 ANKK1Q8NFD2 765 aa8.25□□□□□ -1.09
VPS52-219ENST00000493379 EXOC6Q8TAG9 804 aa8.25□□□□□ -1.09
VPS52-219ENST00000493379 GNL3LQ9NVN8 582 aaKnown RBP8.25□□□□□ -1.09
VPS52-219ENST00000493379 DBNLQ9UJU6 430 aaKnown RBP8.25□□□□□ -1.09
VPS52-219ENST00000493379 PTCH2Q9Y6C5 1203 aa8.25□□□□□ -1.09
VPS52-219ENST00000493379 ZNF646O15015 1829 aaPredicted RBP8.24□□□□□ -1.09
VPS52-219ENST00000493379 PPP4CP60510 307 aa8.24□□□□□ -1.09
VPS52-219ENST00000493379 RASGRF1Q13972 1273 aa8.24□□□□□ -1.09
VPS52-219ENST00000493379 LRIT3Q3SXY7 679 aa8.24□□□□□ -1.09
VPS52-219ENST00000493379 SLC9C1Q4G0N8 1177 aa8.24□□□□□ -1.09
VPS52-219ENST00000493379 MFSD14BQ5SR56 506 aa8.24□□□□□ -1.09
VPS52-219ENST00000493379 BLOC1S3Q6QNY0 202 aa8.24□□□□□ -1.09
VPS52-219ENST00000493379 HHIPL2Q6UWX4 724 aa8.24□□□□□ -1.09
VPS52-219ENST00000493379 VPS37DQ86XT2 251 aa8.24□□□□□ -1.09
VPS52-219ENST00000493379 CLASRPQ8N2M8 674 aaKnown RBP8.24□□□□□ -1.09
VPS52-219ENST00000493379 SH3TC2Q8TF17 1288 aa8.24□□□□□ -1.09
VPS52-219ENST00000493379 GDF15Q99988 308 aa8.24□□□□□ -1.09
VPS52-219ENST00000493379 DBNDD2Q9BQY9 259 aa8.24□□□□□ -1.09
VPS52-219ENST00000493379 MXD3Q9BW11 206 aa8.24□□□□□ -1.09
Retrieved 100 of 20,778 RNA–protein pairs in 380.7 ms