RNA–Protein interactions for RNA: ENST00000489979.1

VARS-227, Transcript of valyl-tRNA synthetase, humanhuman

TSL 3

Gene VARS, Length 658 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VARS-227ENST00000489979 DHX36Q9H2U1 1008 aaKnown RBP17.2■□□□□ 0.34
VARS-227ENST00000489979 MTMR10Q9NXD2 777 aa17.2■□□□□ 0.34
VARS-227ENST00000489979 AATFQ9NY61 560 aaKnown RBP eCLIP17.2■□□□□ 0.34
VARS-227ENST00000489979 LRP2BPQ9P2M1 347 aa17.2■□□□□ 0.34
VARS-227ENST00000489979 STXBP5LQ9Y2K9 1186 aa17.2■□□□□ 0.34
VARS-227ENST00000489979 CDK5RAP2Q96SN8 1893 aa17.19■□□□□ 0.34
VARS-227ENST00000489979 GNAI3P08754 354 aa17.19■□□□□ 0.34
VARS-227ENST00000489979 CT47B1P0C2W7 299 aaPredicted RBP17.19■□□□□ 0.34
VARS-227ENST00000489979 PDE3AQ14432 1141 aa17.19■□□□□ 0.34
VARS-227ENST00000489979 SHROOM1Q2M3G4 852 aaPredicted RBP17.19■□□□□ 0.34
VARS-227ENST00000489979 Q3C1V9 767 aa17.19■□□□□ 0.34
VARS-227ENST00000489979 TRMT44Q8IYL2 757 aaKnown RBP17.19■□□□□ 0.34
VARS-227ENST00000489979 DNAJC18Q9H819 358 aa17.19■□□□□ 0.34
VARS-227ENST00000489979 RBPJLQ9UBG7 517 aa17.19■□□□□ 0.34
VARS-227ENST00000489979 C19orf81C9J6K1 198 aa17.18■□□□□ 0.34
VARS-227ENST00000489979 USP17L10C9JJH3 530 aa17.18■□□□□ 0.34
VARS-227ENST00000489979 GDF11O95390 407 aa17.18■□□□□ 0.34
VARS-227ENST00000489979 COL6A1P12109 1028 aa17.18■□□□□ 0.34
VARS-227ENST00000489979 CCND3P30281 292 aaPredicted RBP17.18■□□□□ 0.34
VARS-227ENST00000489979 MAPK4P31152 587 aa17.18■□□□□ 0.34
VARS-227ENST00000489979 ERVK-9P63128 1117 aa17.18■□□□□ 0.34
VARS-227ENST00000489979 ERVK-24P63145 666 aa17.18■□□□□ 0.34
VARS-227ENST00000489979 CCL14Q16627 93 aa17.18■□□□□ 0.34
VARS-227ENST00000489979 LHX8Q68G74 356 aa17.18■□□□□ 0.34
VARS-227ENST00000489979 NAA16Q6N069 864 aaPredicted RBP17.18■□□□□ 0.34
VARS-227ENST00000489979 MAPKAPK5Q8IW41 473 aa17.18■□□□□ 0.34
VARS-227ENST00000489979 CCAR1Q8IX12 1150 aaKnown RBP17.18■□□□□ 0.34
VARS-227ENST00000489979 TGFBRAP1Q8WUH2 860 aa17.18■□□□□ 0.34
VARS-227ENST00000489979 USP6NLQ92738 828 aa17.18■□□□□ 0.34
VARS-227ENST00000489979 PORCNQ9H237 461 aa17.18■□□□□ 0.34
VARS-227ENST00000489979 BAG3O95817 575 aa17.17■□□□□ 0.34
VARS-227ENST00000489979 UQCRFS1P1P0C7P4 283 aa17.17■□□□□ 0.34
VARS-227ENST00000489979 PLCG2P16885 1265 aa17.17■□□□□ 0.34
VARS-227ENST00000489979 RGS2P41220 211 aa17.17■□□□□ 0.34
VARS-227ENST00000489979 LRRC26Q2I0M4 334 aa17.17■□□□□ 0.34
VARS-227ENST00000489979 MORN1Q5T089 497 aa17.17■□□□□ 0.34
VARS-227ENST00000489979 GPR142Q7Z601 462 aa17.17■□□□□ 0.34
VARS-227ENST00000489979 METTL16Q86W50 562 aaKnown RBP17.17■□□□□ 0.34
VARS-227ENST00000489979 CRACR2BQ8N4Y2 399 aaPredicted RBP17.17■□□□□ 0.34
VARS-227ENST00000489979 PAGR1Q9BTK6 254 aa17.17■□□□□ 0.34
VARS-227ENST00000489979 TRIM34Q9BYJ4 488 aa17.17■□□□□ 0.34
VARS-227ENST00000489979 SNRKQ9NRH2 765 aa17.17■□□□□ 0.34
VARS-227ENST00000489979 FLT1P17948 1338 aa17.17■□□□□ 0.34
VARS-227ENST00000489979 FOCADQ5VW36 1801 aa17.17■□□□□ 0.34
VARS-227ENST00000489979 UNC80Q8N2C7 3258 aa17.16■□□□□ 0.34
VARS-227ENST00000489979 MAST2Q6P0Q8 1798 aa17.16■□□□□ 0.34
VARS-227ENST00000489979 PPP4CP60510 307 aa17.16■□□□□ 0.34
VARS-227ENST00000489979 MDM2Q00987 491 aaPredicted RBP17.16■□□□□ 0.34
VARS-227ENST00000489979 G3BP1Q13283 466 aaKnown RBP eCLIP17.16■□□□□ 0.342e-7■■■□□ 18.1
VARS-227ENST00000489979 POTEEQ6S8J3 1075 aa17.16■□□□□ 0.34
VARS-227ENST00000489979 PLEKHH3Q7Z736 793 aa17.16■□□□□ 0.34
VARS-227ENST00000489979 FOXP4Q8IVH2 680 aaPredicted RBP17.16■□□□□ 0.34
VARS-227ENST00000489979 GINM1Q9NU53 330 aa17.16■□□□□ 0.34
VARS-227ENST00000489979 PALD1Q9ULE6 856 aa17.16■□□□□ 0.34
VARS-227ENST00000489979 ZBTB21Q9ULJ3 1066 aa17.16■□□□□ 0.34
VARS-227ENST00000489979 FRMPD3Q5JV73 1810 aa17.15■□□□□ 0.34
VARS-227ENST00000489979 RARSP54136 660 aaKnown RBP17.15■□□□□ 0.34
VARS-227ENST00000489979 ADGRA1Q86SQ6 560 aa17.15■□□□□ 0.34
VARS-227ENST00000489979 GTF3C2Q8WUA4 911 aaPredicted RBP17.15■□□□□ 0.34
VARS-227ENST00000489979 ARHGAP45Q92619 1136 aa17.15■□□□□ 0.34
VARS-227ENST00000489979 APBA2Q99767 749 aa17.15■□□□□ 0.34
VARS-227ENST00000489979 EMILIN3Q9NT22 766 aa17.15■□□□□ 0.34
VARS-227ENST00000489979 MYO5AQ9Y4I1 1855 aaKnown RBP17.15■□□□□ 0.34
VARS-227ENST00000489979 PNMA6EA0A0J9YXQ4 647 aa17.14■□□□□ 0.33
VARS-227ENST00000489979 USP17L2Q6R6M4 530 aa17.14■□□□□ 0.33
VARS-227ENST00000489979 CWC22Q9HCG8 908 aaKnown RBP17.14■□□□□ 0.33
VARS-227ENST00000489979 SAP30BPQ9UHR5 308 aaKnown RBP17.14■□□□□ 0.33
VARS-227ENST00000489979 DNAH12Q6ZR08 3092 aa17.13■□□□□ 0.33
VARS-227ENST00000489979 GNAI2P04899 355 aa17.13■□□□□ 0.33
VARS-227ENST00000489979 TTC39AQ5SRH9 613 aa17.13■□□□□ 0.33
VARS-227ENST00000489979 CNMDO75829 334 aa17.12■□□□□ 0.33
VARS-227ENST00000489979 CYP2E1P05181 493 aaPredicted RBP17.12■□□□□ 0.33
VARS-227ENST00000489979 HLA-DOAP06340 250 aa17.12■□□□□ 0.33
VARS-227ENST00000489979 MAP2K5Q13163 448 aa17.12■□□□□ 0.33
VARS-227ENST00000489979 EDC3Q96F86 508 aaKnown RBP17.12■□□□□ 0.33
VARS-227ENST00000489979 RABGAP1Q9Y3P9 1069 aa17.12■□□□□ 0.33
VARS-227ENST00000489979 NDUFB9Q9Y6M9 179 aa17.12■□□□□ 0.33
VARS-227ENST00000489979 MYH1P12882 1939 aa17.11■□□□□ 0.33
VARS-227ENST00000489979 LAMA2P24043 3122 aaKnown RBP17.11■□□□□ 0.33
VARS-227ENST00000489979 GH2P01242 217 aa17.11■□□□□ 0.33
VARS-227ENST00000489979 DYNLL1P63167 89 aaKnown RBP17.11■□□□□ 0.33
VARS-227ENST00000489979 ZYXQ15942 572 aaKnown RBP17.11■□□□□ 0.33
VARS-227ENST00000489979 CCDC158Q5M9N0 1113 aa17.11■□□□□ 0.33
VARS-227ENST00000489979 ATF7IPQ6VMQ6 1270 aa17.11■□□□□ 0.33
VARS-227ENST00000489979 DBNDD2Q9BQY9 259 aa17.11■□□□□ 0.33
VARS-227ENST00000489979 SENP6Q9GZR1 1112 aaPredicted RBP17.11■□□□□ 0.33
VARS-227ENST00000489979 FLRT1Q9NZU1 646 aa17.11■□□□□ 0.33
VARS-227ENST00000489979 USP17L15C9J2P7 530 aa17.1■□□□□ 0.33
VARS-227ENST00000489979 USP17L13C9JLJ4 530 aa17.1■□□□□ 0.33
VARS-227ENST00000489979 USP17L11C9JVI0 530 aa17.1■□□□□ 0.33
VARS-227ENST00000489979 USP17L18D6R9N7 530 aa17.1■□□□□ 0.33
VARS-227ENST00000489979 USP17L22D6RA61 530 aa17.1■□□□□ 0.33
VARS-227ENST00000489979 USP17L17D6RBQ6 530 aa17.1■□□□□ 0.33
VARS-227ENST00000489979 USP17L19D6RCP7 530 aa17.1■□□□□ 0.33
VARS-227ENST00000489979 USP17L20D6RJB6 530 aa17.1■□□□□ 0.33
VARS-227ENST00000489979 POTEB2H3BUK9 544 aa17.1■□□□□ 0.33
VARS-227ENST00000489979 GLRX3O76003 335 aaKnown RBP17.1■□□□□ 0.33
VARS-227ENST00000489979 CCNA1P78396 465 aa17.1■□□□□ 0.33
VARS-227ENST00000489979 USP17L24Q0WX57 530 aa17.1■□□□□ 0.33
VARS-227ENST00000489979 TNNI3KQ59H18 835 aa17.1■□□□□ 0.33
Retrieved 100 of 20,778 RNA–protein pairs in 84.3 ms