RNA–Protein interactions for RNA: ENST00000489142.5

VTI1A-206, Transcript of vesicle transport through interaction with t-SNAREs 1A, humanhuman

TSL 2

Gene VTI1A, Length 727 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VTI1A-206ENST00000489142 CERS3Q8IU89 383 aa16.97■□□□□ 0.31
VTI1A-206ENST00000489142 SMCR8Q8TEV9 937 aaPredicted RBP16.97■□□□□ 0.31
VTI1A-206ENST00000489142 SH3TC2Q8TF17 1288 aa16.97■□□□□ 0.31
VTI1A-206ENST00000489142 CRNKL1Q9BZJ0 848 aaKnown RBP16.97■□□□□ 0.31
VTI1A-206ENST00000489142 ZBTB21Q9ULJ3 1066 aa16.97■□□□□ 0.31
VTI1A-206ENST00000489142 BRCA2P51587 3418 aa16.96■□□□□ 0.31
VTI1A-206ENST00000489142 PRKAB2O43741 272 aa16.96■□□□□ 0.31
VTI1A-206ENST00000489142 MBD4O95243 580 aa16.96■□□□□ 0.31
VTI1A-206ENST00000489142 GH2P01242 217 aa16.96■□□□□ 0.31
VTI1A-206ENST00000489142 POLR3DP05423 398 aaPredicted RBP16.96■□□□□ 0.31
VTI1A-206ENST00000489142 ASNSP08243 561 aa16.96■□□□□ 0.31
VTI1A-206ENST00000489142 CYP2D6P10635 497 aa16.96■□□□□ 0.31
VTI1A-206ENST00000489142 ADD2P35612 726 aa16.96■□□□□ 0.31
VTI1A-206ENST00000489142 ANKRD13CQ8N6S4 541 aa16.96■□□□□ 0.31
VTI1A-206ENST00000489142 PROCA1Q8NCQ7 364 aaPredicted RBP16.96■□□□□ 0.31
VTI1A-206ENST00000489142 ARMC5Q96C12 935 aa16.96■□□□□ 0.31
VTI1A-206ENST00000489142 AS3MTQ9HBK9 375 aa16.96■□□□□ 0.31
VTI1A-206ENST00000489142 SERPINB13Q9UIV8 391 aa16.96■□□□□ 0.31
VTI1A-206ENST00000489142 OSBPP22059 807 aa16.95■□□□□ 0.3
VTI1A-206ENST00000489142 TMED8Q6PL24 325 aaPredicted RBP16.95■□□□□ 0.3
VTI1A-206ENST00000489142 TBC1D2Q9BYX2 928 aa16.95■□□□□ 0.3
VTI1A-206ENST00000489142 DDX24Q9GZR7 859 aaKnown RBP eCLIP16.95■□□□□ 0.3
VTI1A-206ENST00000489142 ECHDC1Q9NTX5 307 aa16.95■□□□□ 0.3
VTI1A-206ENST00000489142 MCM9Q9NXL9 1143 aa16.95■□□□□ 0.3
VTI1A-206ENST00000489142 SLC45A1Q9Y2W3 748 aa16.95■□□□□ 0.3
VTI1A-206ENST00000489142 MYPNQ86TC9 1320 aa16.95■□□□□ 0.3
VTI1A-206ENST00000489142 SHMT1P34896 483 aa16.94■□□□□ 0.3
VTI1A-206ENST00000489142 BACE1P56817 501 aa16.94■□□□□ 0.3
VTI1A-206ENST00000489142 ZYXQ15942 572 aaKnown RBP16.94■□□□□ 0.3
VTI1A-206ENST00000489142 TTC6Q86TZ1 520 aa16.94■□□□□ 0.3
VTI1A-206ENST00000489142 OTUD7AQ8TE49 926 aaPredicted RBP16.94■□□□□ 0.3
VTI1A-206ENST00000489142 ZNF333Q96JL9 665 aa16.94■□□□□ 0.3
VTI1A-206ENST00000489142 WDR18Q9BV38 432 aa16.94■□□□□ 0.3
VTI1A-206ENST00000489142 EHD4Q9H223 541 aa16.94■□□□□ 0.3
VTI1A-206ENST00000489142 DCP1AQ9NPI6 582 aaPredicted RBP16.94■□□□□ 0.3
VTI1A-206ENST00000489142 SRRDQ9UH36 339 aa16.94■□□□□ 0.3
VTI1A-206ENST00000489142 DOCK3Q8IZD9 2030 aa16.94■□□□□ 0.3
VTI1A-206ENST00000489142 KIAA0100Q14667 2235 aaKnown RBP16.93■□□□□ 0.3
VTI1A-206ENST00000489142 SMIM22K7EJ46 135 aa16.93■□□□□ 0.3
VTI1A-206ENST00000489142 PEX10O60683 326 aa16.93■□□□□ 0.3
VTI1A-206ENST00000489142 FCGRTP55899 365 aa16.93■□□□□ 0.3
VTI1A-206ENST00000489142 PRKCZQ05513 592 aa16.93■□□□□ 0.3
VTI1A-206ENST00000489142 RAB3GAP1Q15042 981 aa16.93■□□□□ 0.3
VTI1A-206ENST00000489142 CERKLQ49MI3 558 aaPredicted RBP16.93■□□□□ 0.3
VTI1A-206ENST00000489142 SH3D19Q5HYK7 790 aa16.93■□□□□ 0.3
VTI1A-206ENST00000489142 TATDN1Q6P1N9 297 aa16.93■□□□□ 0.3
VTI1A-206ENST00000489142 SLC44A5Q8NCS7 719 aa16.93■□□□□ 0.3
VTI1A-206ENST00000489142 ASCC2Q9H1I8 757 aaPredicted RBP16.93■□□□□ 0.3
VTI1A-206ENST00000489142 TMOD4Q9NZQ9 345 aa16.93■□□□□ 0.3
VTI1A-206ENST00000489142 PNMA3Q9UL41 463 aa16.93■□□□□ 0.3
VTI1A-206ENST00000489142 GABRQQ9UN88 632 aa16.93■□□□□ 0.3
VTI1A-206ENST00000489142 CYP2D7A0A087X1C5 515 aa16.92■□□□□ 0.3
VTI1A-206ENST00000489142 GNRH1P01148 92 aa16.92■□□□□ 0.3
VTI1A-206ENST00000489142 ABCB5Q2M3G0 1257 aa16.92■□□□□ 0.3
VTI1A-206ENST00000489142 RAET1EQ8TD07 263 aa16.92■□□□□ 0.3
VTI1A-206ENST00000489142 DYNLL2Q96FJ2 89 aa16.92■□□□□ 0.3
VTI1A-206ENST00000489142 PUS7LQ9H0K6 701 aaKnown RBP16.92■□□□□ 0.3
VTI1A-206ENST00000489142 USP17L10C9JJH3 530 aa16.91■□□□□ 0.3
VTI1A-206ENST00000489142 EN2P19622 333 aaPredicted RBP16.91■□□□□ 0.3
VTI1A-206ENST00000489142 NBPF11Q86T75 865 aa16.91■□□□□ 0.3
VTI1A-206ENST00000489142 GPATCH3Q96I76 525 aa16.91■□□□□ 0.3
VTI1A-206ENST00000489142 FEZ1Q99689 392 aa16.91■□□□□ 0.3
VTI1A-206ENST00000489142 MPHOSPH10O00566 681 aaKnown RBP16.9■□□□□ 0.3
VTI1A-206ENST00000489142 TNPO2O14787 897 aaKnown RBP16.9■□□□□ 0.3
VTI1A-206ENST00000489142 HOXD10P28358 340 aa16.9■□□□□ 0.3
VTI1A-206ENST00000489142 GUCY1A2P33402 732 aa16.9■□□□□ 0.3
VTI1A-206ENST00000489142 IRX3P78415 501 aaPredicted RBP16.9■□□□□ 0.3
VTI1A-206ENST00000489142 GABPAQ06546 454 aa16.9■□□□□ 0.3
VTI1A-206ENST00000489142 PABPC4Q13310 644 aaKnown RBP eCLIP16.9■□□□□ 0.34e-7■■■□□ 17.1
VTI1A-206ENST00000489142 UBE3CQ15386 1083 aa16.9■□□□□ 0.3
VTI1A-206ENST00000489142 ACER1Q8TDN7 264 aa16.9■□□□□ 0.3
VTI1A-206ENST00000489142 EMILIN3Q9NT22 766 aa16.9■□□□□ 0.3
VTI1A-206ENST00000489142 GINM1Q9NU53 330 aa16.9■□□□□ 0.3
VTI1A-206ENST00000489142 SLC4A4Q9Y6R1 1079 aa16.9■□□□□ 0.3
VTI1A-206ENST00000489142 MKI67P46013 3256 aaKnown RBP16.9■□□□□ 0.3
VTI1A-206ENST00000489142 PDE4DIPQ5VU43 2346 aa16.89■□□□□ 0.29
VTI1A-206ENST00000489142 C19orf81C9J6K1 198 aa16.89■□□□□ 0.29
VTI1A-206ENST00000489142 PRMT2P55345 433 aa16.89■□□□□ 0.29
VTI1A-206ENST00000489142 SEPT2Q15019 361 aa16.89■□□□□ 0.29
VTI1A-206ENST00000489142 MTFR1Q15390 333 aa16.89■□□□□ 0.29
VTI1A-206ENST00000489142 FAM110CQ1W6H9 321 aa16.89■□□□□ 0.29
VTI1A-206ENST00000489142 P2RX7Q99572 595 aaKnown RBP16.89■□□□□ 0.29
VTI1A-206ENST00000489142 TMEM106CQ9BVX2 250 aa16.89■□□□□ 0.29
VTI1A-206ENST00000489142 TAOK2Q9UL54 1235 aa16.89■□□□□ 0.29
VTI1A-206ENST00000489142 GRK4P32298 578 aa16.88■□□□□ 0.29
VTI1A-206ENST00000489142 FLT3LGP49771 235 aa16.88■□□□□ 0.29
VTI1A-206ENST00000489142 ZSCAN25Q6NSZ9 544 aa16.88■□□□□ 0.29
VTI1A-206ENST00000489142 USP17L2Q6R6M4 530 aa16.88■□□□□ 0.29
VTI1A-206ENST00000489142 CLEC10AQ8IUN9 316 aa16.88■□□□□ 0.29
VTI1A-206ENST00000489142 KBTBD3Q8NAB2 608 aa16.88■□□□□ 0.29
VTI1A-206ENST00000489142 CABP5Q9NP86 173 aa16.88■□□□□ 0.29
VTI1A-206ENST00000489142 ATP8A2Q9NTI2 1148 aa16.88■□□□□ 0.29
VTI1A-206ENST00000489142 PLXNB2O15031 1838 aa16.88■□□□□ 0.29
VTI1A-206ENST00000489142 USP17L12C9JPN9 530 aa16.87■□□□□ 0.29
VTI1A-206ENST00000489142 USP17L21D6R901 530 aa16.87■□□□□ 0.29
VTI1A-206ENST00000489142 ELNP15502 786 aa16.87■□□□□ 0.29
VTI1A-206ENST00000489142 GCLCP48506 637 aaPredicted RBP16.87■□□□□ 0.29
VTI1A-206ENST00000489142 HERVK_113P62684 666 aa16.87■□□□□ 0.29
VTI1A-206ENST00000489142 PI4K2BQ8TCG2 481 aa16.87■□□□□ 0.29
VTI1A-206ENST00000489142 OSBP2Q969R2 916 aa16.87■□□□□ 0.29
Retrieved 100 of 20,778 RNA–protein pairs in 33.9 ms