RNA–Protein interactions for RNA: ENST00000481019.5

PTPRF-213, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 3

Gene PTPRF, Length 459 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-213ENST00000481019 GPAT2Q6NUI2 795 aa14.7□□□□□ -0.06
PTPRF-213ENST00000481019 TATDN1Q6P1N9 297 aa14.7□□□□□ -0.06
PTPRF-213ENST00000481019 CTR9Q6PD62 1173 aa14.7□□□□□ -0.06
PTPRF-213ENST00000481019 PRDM10Q9NQV6 1147 aa14.7□□□□□ -0.06
PTPRF-213ENST00000481019 ATP8A2Q9NTI2 1148 aa14.7□□□□□ -0.06
PTPRF-213ENST00000481019 SERPINB13Q9UIV8 391 aa14.7□□□□□ -0.06
PTPRF-213ENST00000481019 TRIM6-TRIM34B2RNG4 842 aa14.69□□□□□ -0.06
PTPRF-213ENST00000481019 GUCY1A2P33402 732 aa14.69□□□□□ -0.06
PTPRF-213ENST00000481019 INHBEP58166 350 aa14.69□□□□□ -0.06
PTPRF-213ENST00000481019 CAP1Q01518 475 aa14.69□□□□□ -0.06
PTPRF-213ENST00000481019 CRHR2Q13324 411 aa14.69□□□□□ -0.06
PTPRF-213ENST00000481019 C12orf60Q5U649 245 aa14.69□□□□□ -0.06
PTPRF-213ENST00000481019 VPS53Q5VIR6 699 aa14.69□□□□□ -0.06
PTPRF-213ENST00000481019 TTC6Q86TZ1 520 aa14.69□□□□□ -0.06
PTPRF-213ENST00000481019 RILPL2Q969X0 211 aa14.69□□□□□ -0.06
PTPRF-213ENST00000481019 TRIM75PA6NK02 468 aa14.68□□□□□ -0.06
PTPRF-213ENST00000481019 GH2P01242 217 aa14.68□□□□□ -0.06
PTPRF-213ENST00000481019 CETPP11597 493 aa14.68□□□□□ -0.06
PTPRF-213ENST00000481019 NMIQ13287 307 aaPredicted RBP14.68□□□□□ -0.06
PTPRF-213ENST00000481019 CFHR5Q9BXR6 569 aa14.68□□□□□ -0.06
PTPRF-213ENST00000481019 TRIM34Q9BYJ4 488 aa14.68□□□□□ -0.06
PTPRF-213ENST00000481019 ZBTB21Q9ULJ3 1066 aa14.68□□□□□ -0.06
PTPRF-213ENST00000481019 A0A0G2JLL6 359 aaPredicted RBP14.67□□□□□ -0.06
PTPRF-213ENST00000481019 CXCL11O14625 94 aa14.67□□□□□ -0.06
PTPRF-213ENST00000481019 SPP2Q13103 211 aa14.67□□□□□ -0.06
PTPRF-213ENST00000481019 PRRT2Q7Z6L0 340 aaPredicted RBP14.67□□□□□ -0.06
PTPRF-213ENST00000481019 ZNF589Q86UQ0 364 aaPredicted RBP14.67□□□□□ -0.06
PTPRF-213ENST00000481019 STK11IPQ8N1F8 1099 aa14.67□□□□□ -0.06
PTPRF-213ENST00000481019 ZNF296Q8WUU4 475 aaPredicted RBP14.67□□□□□ -0.06
PTPRF-213ENST00000481019 LOC285556D6RIA3 1793 aa14.66□□□□□ -0.06
PTPRF-213ENST00000481019 USP17L5A8MUK1 530 aa14.66□□□□□ -0.06
PTPRF-213ENST00000481019 GPR25O00155 361 aa14.66□□□□□ -0.06
PTPRF-213ENST00000481019 SDSP20132 328 aa14.66□□□□□ -0.06
PTPRF-213ENST00000481019 CERKLQ49MI3 558 aaPredicted RBP14.66□□□□□ -0.06
PTPRF-213ENST00000481019 TREML2Q5T2D2 321 aa14.66□□□□□ -0.06
PTPRF-213ENST00000481019 TTC22Q5TAA0 569 aa14.66□□□□□ -0.06
PTPRF-213ENST00000481019 IFNL3Q8IZI9 196 aa14.66□□□□□ -0.06
PTPRF-213ENST00000481019 ZNF280CQ8ND82 737 aa14.66□□□□□ -0.06
PTPRF-213ENST00000481019 TACC3Q9Y6A5 838 aa14.66□□□□□ -0.06
PTPRF-213ENST00000481019 ZSWIM8A7E2V4 1837 aa14.65□□□□□ -0.06
PTPRF-213ENST00000481019 PATL2C9JE40 543 aaKnown RBP14.65□□□□□ -0.06
PTPRF-213ENST00000481019 PDHXO00330 501 aa14.65□□□□□ -0.06
PTPRF-213ENST00000481019 ALDH1A1P00352 501 aa14.65□□□□□ -0.06
PTPRF-213ENST00000481019 AKR1B1P15121 316 aa14.65□□□□□ -0.06
PTPRF-213ENST00000481019 CDK8P49336 464 aa14.65□□□□□ -0.06
PTPRF-213ENST00000481019 HMGCS2P54868 508 aa14.65□□□□□ -0.06
PTPRF-213ENST00000481019 SBK1Q52WX2 424 aa14.65□□□□□ -0.06
PTPRF-213ENST00000481019 GADL1Q6ZQY3 521 aa14.65□□□□□ -0.06
PTPRF-213ENST00000481019 C16orf86Q6ZW13 317 aa14.65□□□□□ -0.06
PTPRF-213ENST00000481019 ANKRD23Q86SG2 305 aa14.65□□□□□ -0.06
PTPRF-213ENST00000481019 CLEC10AQ8IUN9 316 aa14.65□□□□□ -0.06
PTPRF-213ENST00000481019 ACER1Q8TDN7 264 aa14.65□□□□□ -0.06
PTPRF-213ENST00000481019 WDR18Q9BV38 432 aa14.65□□□□□ -0.06
PTPRF-213ENST00000481019 IL25Q9H293 177 aa14.65□□□□□ -0.06
PTPRF-213ENST00000481019 HTTP42858 3142 aa14.64□□□□□ -0.07
PTPRF-213ENST00000481019 MINDY4BA8MYZ0 360 aa14.64□□□□□ -0.07
PTPRF-213ENST00000481019 APPP05067 770 aa14.64□□□□□ -0.07
PTPRF-213ENST00000481019 ASNSP08243 561 aa14.64□□□□□ -0.07
PTPRF-213ENST00000481019 CYP2C8P10632 490 aa14.64□□□□□ -0.07
PTPRF-213ENST00000481019 MTMR2Q13614 643 aa14.64□□□□□ -0.07
PTPRF-213ENST00000481019 SEPT2Q15019 361 aa14.64□□□□□ -0.07
PTPRF-213ENST00000481019 TAF1CQ15572 869 aaPredicted RBP14.64□□□□□ -0.07
PTPRF-213ENST00000481019 ABCB5Q2M3G0 1257 aa14.64□□□□□ -0.07
PTPRF-213ENST00000481019 LRRFIP1Q32MZ4 808 aaKnown RBP14.64□□□□□ -0.07
PTPRF-213ENST00000481019 GIMAP6Q6P9H5 292 aa14.64□□□□□ -0.07
PTPRF-213ENST00000481019 SIAH1Q8IUQ4 282 aa14.64□□□□□ -0.07
PTPRF-213ENST00000481019 HELLSQ9NRZ9 838 aa14.64□□□□□ -0.07
PTPRF-213ENST00000481019 MYH8P13535 1937 aa14.64□□□□□ -0.07
PTPRF-213ENST00000481019 ADGRA2Q96PE1 1338 aa14.64□□□□□ -0.07
PTPRF-213ENST00000481019 GNAT2P19087 354 aa14.63□□□□□ -0.07
PTPRF-213ENST00000481019 TDO2P48775 406 aa14.63□□□□□ -0.07
PTPRF-213ENST00000481019 RAB3GAP1Q15042 981 aa14.63□□□□□ -0.07
PTPRF-213ENST00000481019 MCMDC2Q4G0Z9 681 aa14.63□□□□□ -0.07
PTPRF-213ENST00000481019 OTUD7BQ6GQQ9 843 aa14.63□□□□□ -0.07
PTPRF-213ENST00000481019 GNL3Q9BVP2 549 aaKnown RBP eCLIP14.63□□□□□ -0.07
PTPRF-213ENST00000481019 INCENPQ9NQS7 918 aa14.63□□□□□ -0.07
PTPRF-213ENST00000481019 ARPP21Q9UBL0 812 aaPredicted RBP14.63□□□□□ -0.07
PTPRF-213ENST00000481019 ROBO3Q96MS0 1386 aa14.62□□□□□ -0.07
PTPRF-213ENST00000481019 A0A1W2PRG0 241 aa14.62□□□□□ -0.07
PTPRF-213ENST00000481019 BACE1P56817 501 aa14.62□□□□□ -0.07
PTPRF-213ENST00000481019 SH3D19Q5HYK7 790 aa14.62□□□□□ -0.07
PTPRF-213ENST00000481019 CWC27Q6UX04 472 aaKnown RBP14.62□□□□□ -0.07
PTPRF-213ENST00000481019 ZFYVE28Q9HCC9 887 aa14.62□□□□□ -0.07
PTPRF-213ENST00000481019 EMILIN3Q9NT22 766 aa14.62□□□□□ -0.07
PTPRF-213ENST00000481019 SWAP70Q9UH65 585 aa14.62□□□□□ -0.07
PTPRF-213ENST00000481019 GREB1LQ9C091 1923 aaPredicted RBP14.61□□□□□ -0.07
PTPRF-213ENST00000481019 MPHOSPH10O00566 681 aaKnown RBP14.61□□□□□ -0.07
PTPRF-213ENST00000481019 FKTNO75072 461 aa14.61□□□□□ -0.07
PTPRF-213ENST00000481019 PRDM1O75626 825 aa14.61□□□□□ -0.07
PTPRF-213ENST00000481019 RASA1P20936 1047 aa14.61□□□□□ -0.07
PTPRF-213ENST00000481019 CTGFP29279 349 aa14.61□□□□□ -0.07
PTPRF-213ENST00000481019 ZYXQ15942 572 aaKnown RBP14.61□□□□□ -0.07
PTPRF-213ENST00000481019 NOM1Q5C9Z4 860 aaKnown RBP14.61□□□□□ -0.07
PTPRF-213ENST00000481019 KIAA1755Q5JYT7 1200 aa14.61□□□□□ -0.07
PTPRF-213ENST00000481019 FASTKD5Q7L8L6 764 aaKnown RBP14.61□□□□□ -0.07
PTPRF-213ENST00000481019 TNS4Q8IZW8 715 aa14.61□□□□□ -0.07
PTPRF-213ENST00000481019 NKX2-3Q8TAU0 364 aa14.61□□□□□ -0.07
PTPRF-213ENST00000481019 DDRGK1Q96HY6 314 aa14.61□□□□□ -0.07
PTPRF-213ENST00000481019 ZCCHC17Q9NP64 241 aaKnown RBP14.61□□□□□ -0.07
PTPRF-213ENST00000481019 GINM1Q9NU53 330 aa14.61□□□□□ -0.07
Retrieved 100 of 20,778 RNA–protein pairs in 14.5 ms