RNA–Protein interactions for RNA: ENST00000471834.1

SYNE1-220, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best)

Gene SYNE1, Length 7,229 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-220ENST00000471834 PLAGL2Q9UPG8 496 aa6.1□□□□□ -1.43
SYNE1-220ENST00000471834 SPATA31A3Q5VYP0 1347 aa6.09□□□□□ -1.43
SYNE1-220ENST00000471834 A0A1W2PQJ5 194 aa6.09□□□□□ -1.43
SYNE1-220ENST00000471834 TRAPPC10P48553 1259 aa6.09□□□□□ -1.43
SYNE1-220ENST00000471834 TOB1P50616 345 aaPredicted RBP6.09□□□□□ -1.43
SYNE1-220ENST00000471834 FOXO4P98177 505 aa6.09□□□□□ -1.43
SYNE1-220ENST00000471834 CTDSPL2Q05D32 466 aa6.09□□□□□ -1.43
SYNE1-220ENST00000471834 GPS2Q13227 327 aa6.09□□□□□ -1.43
SYNE1-220ENST00000471834 PROSER3Q2NL68 480 aa6.09□□□□□ -1.43
SYNE1-220ENST00000471834 WWC2Q6AWC2 1192 aa6.09□□□□□ -1.43
SYNE1-220ENST00000471834 TMEM87BQ96K49 555 aa6.09□□□□□ -1.43
SYNE1-220ENST00000471834 ERGIC2Q96RQ1 377 aa6.09□□□□□ -1.43
SYNE1-220ENST00000471834 BTNL10A8MVZ5 291 aa6.09□□□□□ -1.43
SYNE1-220ENST00000471834 M0R2N6 131 aa6.09□□□□□ -1.43
SYNE1-220ENST00000471834 VSNL1P62760 191 aa6.09□□□□□ -1.43
SYNE1-220ENST00000471834 TCEAL1Q15170 157 aa6.09□□□□□ -1.43
SYNE1-220ENST00000471834 MCTP2Q6DN12 878 aa6.09□□□□□ -1.43
SYNE1-220ENST00000471834 AOPEPQ8N6M6 819 aa6.09□□□□□ -1.43
SYNE1-220ENST00000471834 CDC27P30260 824 aa6.09□□□□□ -1.43
SYNE1-220ENST00000471834 APOA5Q6Q788 366 aa6.09□□□□□ -1.43
SYNE1-220ENST00000471834 CRELD2Q6UXH1 353 aaPredicted RBP6.09□□□□□ -1.43
SYNE1-220ENST00000471834 CCNI2Q6ZMN8 369 aaPredicted RBP6.09□□□□□ -1.43
SYNE1-220ENST00000471834 IGDCC4Q8TDY8 1250 aa6.09□□□□□ -1.43
SYNE1-220ENST00000471834 ZCCHC17Q9NP64 241 aaKnown RBP6.09□□□□□ -1.43
SYNE1-220ENST00000471834 TTC7AQ9ULT0 858 aaPredicted RBP6.09□□□□□ -1.43
SYNE1-220ENST00000471834 SLC3A2P08195 630 aaKnown RBP6.09□□□□□ -1.43
SYNE1-220ENST00000471834 ST5P78524 1137 aa6.09□□□□□ -1.43
SYNE1-220ENST00000471834 TRDNQ13061 729 aa6.09□□□□□ -1.43
SYNE1-220ENST00000471834 KCNB1Q14721 858 aa6.09□□□□□ -1.43
SYNE1-220ENST00000471834 CASP8Q14790 479 aa6.09□□□□□ -1.43
SYNE1-220ENST00000471834 SEC23AQ15436 765 aa6.09□□□□□ -1.43
SYNE1-220ENST00000471834 TTLL5Q6EMB2 1281 aa6.09□□□□□ -1.43
SYNE1-220ENST00000471834 JMYQ8N9B5 988 aa6.09□□□□□ -1.43
SYNE1-220ENST00000471834 ANKS1AQ92625 1134 aa6.09□□□□□ -1.43
SYNE1-220ENST00000471834 TEX13AQ9BXU3 409 aaPredicted RBP6.09□□□□□ -1.43
SYNE1-220ENST00000471834 CHPF2Q9P2E5 772 aa6.09□□□□□ -1.43
SYNE1-220ENST00000471834 ZNF804BA4D1E1 1349 aa6.09□□□□□ -1.43
SYNE1-220ENST00000471834 TMCO5BA8MYB1 307 aa6.09□□□□□ -1.44
SYNE1-220ENST00000471834 EYA2O00167 538 aa6.09□□□□□ -1.44
SYNE1-220ENST00000471834 PLSCR1O15162 318 aa6.09□□□□□ -1.44
SYNE1-220ENST00000471834 BMP15O95972 392 aa6.09□□□□□ -1.44
SYNE1-220ENST00000471834 PPM1EQ8WY54 764 aa6.09□□□□□ -1.44
SYNE1-220ENST00000471834 INPP4AQ96PE3 977 aaPredicted RBP6.09□□□□□ -1.44
SYNE1-220ENST00000471834 BIN2Q9UBW5 565 aaPredicted RBP6.09□□□□□ -1.44
SYNE1-220ENST00000471834 SRPRBQ9Y5M8 271 aaKnown RBP6.09□□□□□ -1.44
SYNE1-220ENST00000471834 PPP1R37O75864 691 aa6.08□□□□□ -1.44
SYNE1-220ENST00000471834 GYPCP04921 128 aa6.08□□□□□ -1.44
SYNE1-220ENST00000471834 TRIM29Q14134 588 aa6.08□□□□□ -1.44
SYNE1-220ENST00000471834 TSR1Q2NL82 804 aaKnown RBP6.08□□□□□ -1.44
SYNE1-220ENST00000471834 RCSD1Q6JBY9 416 aa6.08□□□□□ -1.44
SYNE1-220ENST00000471834 WDR59Q6PJI9 974 aa6.08□□□□□ -1.44
SYNE1-220ENST00000471834 TXNDC2Q86VQ3 553 aa6.08□□□□□ -1.44
SYNE1-220ENST00000471834 TMEM174Q8WUU8 243 aa6.08□□□□□ -1.44
SYNE1-220ENST00000471834 GOLGA1Q92805 767 aa6.08□□□□□ -1.44
SYNE1-220ENST00000471834 IFT43Q96FT9 208 aa6.08□□□□□ -1.44
SYNE1-220ENST00000471834 IFNKQ9P0W0 207 aa6.08□□□□□ -1.44
SYNE1-220ENST00000471834 C4AP0C0L4 1744 aa6.08□□□□□ -1.44
SYNE1-220ENST00000471834 C4BP0C0L5 1744 aa6.08□□□□□ -1.44
SYNE1-220ENST00000471834 FER1L4A9Z1Z3 1794 aa6.08□□□□□ -1.44
SYNE1-220ENST00000471834 SCN11AQ9UI33 1791 aa6.08□□□□□ -1.44
SYNE1-220ENST00000471834 GLE1Q53GS7 698 aaKnown RBP6.08□□□□□ -1.44
SYNE1-220ENST00000471834 VPS37DQ86XT2 251 aa6.08□□□□□ -1.44
SYNE1-220ENST00000471834 FSIP1Q8NA03 581 aa6.08□□□□□ -1.44
SYNE1-220ENST00000471834 MTRQ99707 1265 aa6.08□□□□□ -1.44
SYNE1-220ENST00000471834 FAM184BQ9ULE4 1060 aa6.08□□□□□ -1.44
SYNE1-220ENST00000471834 VPS37CA5D8V6 355 aaPredicted RBP6.08□□□□□ -1.44
SYNE1-220ENST00000471834 IRAK1P51617 712 aa6.08□□□□□ -1.44
SYNE1-220ENST00000471834 PIAS4Q8N2W9 510 aaPredicted RBP6.08□□□□□ -1.44
SYNE1-220ENST00000471834 EIF3CLB5ME19 914 aaKnown RBP6.08□□□□□ -1.44
SYNE1-220ENST00000471834 PPP1R3GB7ZBB8 358 aa6.08□□□□□ -1.44
SYNE1-220ENST00000471834 RNF225M0QZC1 329 aaPredicted RBP6.08□□□□□ -1.44
SYNE1-220ENST00000471834 HDXQ7Z353 690 aa6.08□□□□□ -1.44
SYNE1-220ENST00000471834 C4orf32Q8N8J7 132 aa6.08□□□□□ -1.44
SYNE1-220ENST00000471834 EIF3CQ99613 913 aaKnown RBP6.08□□□□□ -1.44
SYNE1-220ENST00000471834 CARD6Q9BX69 1037 aa6.08□□□□□ -1.44
SYNE1-220ENST00000471834 TCRBV5S4A2TA0A5A2 114 aa6.08□□□□□ -1.44
SYNE1-220ENST00000471834 LRRIQ3A6PVS8 624 aaPredicted RBP6.08□□□□□ -1.44
SYNE1-220ENST00000471834 RNF113AO15541 343 aaKnown RBP6.08□□□□□ -1.44
SYNE1-220ENST00000471834 PLCD1P51178 756 aa6.08□□□□□ -1.44
SYNE1-220ENST00000471834 CNGA4Q8IV77 575 aa6.08□□□□□ -1.44
SYNE1-220ENST00000471834 TTC5Q8N0Z6 440 aa6.08□□□□□ -1.44
SYNE1-220ENST00000471834 FTOQ9C0B1 505 aaKnown RBP eCLIP6.08□□□□□ -1.44
SYNE1-220ENST00000471834 TFIP11Q9UBB9 837 aaKnown RBP6.08□□□□□ -1.44
SYNE1-220ENST00000471834 MEGF6O75095 1541 aa6.08□□□□□ -1.44
SYNE1-220ENST00000471834 A0A1B0GUL7 405 aa6.08□□□□□ -1.44
SYNE1-220ENST00000471834 GPTP24298 496 aa6.08□□□□□ -1.44
SYNE1-220ENST00000471834 ANXA13P27216 316 aa6.08□□□□□ -1.44
SYNE1-220ENST00000471834 MAPK8IP2Q13387 824 aaPredicted RBP6.08□□□□□ -1.44
SYNE1-220ENST00000471834 DBNDD2Q9BQY9 259 aa6.08□□□□□ -1.44
SYNE1-220ENST00000471834 H0YGN5 161 aa6.07□□□□□ -1.44
SYNE1-220ENST00000471834 PREPLQ4J6C6 727 aaPredicted RBP6.07□□□□□ -1.44
SYNE1-220ENST00000471834 NFS1Q9Y697 457 aa6.07□□□□□ -1.44
SYNE1-220ENST00000471834 TNS3Q68CZ2 1445 aa6.07□□□□□ -1.44
SYNE1-220ENST00000471834 RANBP6O60518 1105 aaKnown RBP6.07□□□□□ -1.44
SYNE1-220ENST00000471834 MYCNP04198 464 aaPredicted RBP6.07□□□□□ -1.44
SYNE1-220ENST00000471834 NAP1L1P55209 391 aaKnown RBP6.07□□□□□ -1.44
SYNE1-220ENST00000471834 FMR1Q06787 632 aaKnown RBP eCLIP6.07□□□□□ -1.44
SYNE1-220ENST00000471834 DPYDQ12882 1025 aa6.07□□□□□ -1.44
SYNE1-220ENST00000471834 GRIK3Q13003 919 aa6.07□□□□□ -1.44
SYNE1-220ENST00000471834 ORC2Q13416 577 aaPredicted RBP6.07□□□□□ -1.44
Retrieved 100 of 20,778 RNA–protein pairs in 70.1 ms