RNA–Protein interactions for RNA: ENST00000462613.1

SF3B1-206, Transcript of splicing factor 3b subunit 1, humanhuman

TSL 3

Gene SF3B1, Length 141 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B1-206ENST00000462613 MFSD6Q6ZSS7 791 aa7.57□□□□□ -1.2
SF3B1-206ENST00000462613 PPP1R3FQ6ZSY5 799 aaPredicted RBP7.57□□□□□ -1.2
SF3B1-206ENST00000462613 TMEM179Q6ZVK1 233 aa7.57□□□□□ -1.2
SF3B1-206ENST00000462613 C16orf86Q6ZW13 317 aa7.57□□□□□ -1.2
SF3B1-206ENST00000462613 ZNF589Q86UQ0 364 aaPredicted RBP7.57□□□□□ -1.2
SF3B1-206ENST00000462613 SKAP1Q86WV1 359 aa7.57□□□□□ -1.2
SF3B1-206ENST00000462613 ZKSCAN4Q969J2 545 aaPredicted RBP7.57□□□□□ -1.2
SF3B1-206ENST00000462613 OPTNQ96CV9 577 aa7.57□□□□□ -1.2
SF3B1-206ENST00000462613 OTUD5Q96G74 571 aa7.57□□□□□ -1.2
SF3B1-206ENST00000462613 WNK4Q96J92 1243 aa7.57□□□□□ -1.2
SF3B1-206ENST00000462613 FEZ1Q99689 392 aa7.57□□□□□ -1.2
SF3B1-206ENST00000462613 ESYT1Q9BSJ8 1104 aa7.57□□□□□ -1.2
SF3B1-206ENST00000462613 SH2D4AQ9H788 454 aa7.57□□□□□ -1.2
SF3B1-206ENST00000462613 ZNF112Q9UJU3 913 aa7.57□□□□□ -1.2
SF3B1-206ENST00000462613 FZD1Q9UP38 647 aa7.57□□□□□ -1.2
SF3B1-206ENST00000462613 ROBO3Q96MS0 1386 aa7.57□□□□□ -1.2
SF3B1-206ENST00000462613 THSD7BQ9C0I4 1608 aa7.56□□□□□ -1.2
SF3B1-206ENST00000462613 TSPY2A6NKD2 308 aa7.56□□□□□ -1.2
SF3B1-206ENST00000462613 USP17L5A8MUK1 530 aa7.56□□□□□ -1.2
SF3B1-206ENST00000462613 PHF20L1A8MW92 1017 aa7.56□□□□□ -1.2
SF3B1-206ENST00000462613 GDF11O95390 407 aa7.56□□□□□ -1.2
SF3B1-206ENST00000462613 TSPY3P0CV98 308 aa7.56□□□□□ -1.2
SF3B1-206ENST00000462613 TSPY8P0CW00 308 aa7.56□□□□□ -1.2
SF3B1-206ENST00000462613 MCCP23508 829 aa7.56□□□□□ -1.2
SF3B1-206ENST00000462613 CDK8P49336 464 aa7.56□□□□□ -1.2
SF3B1-206ENST00000462613 VEGFBP49765 207 aa7.56□□□□□ -1.2
SF3B1-206ENST00000462613 HTRA3P83110 453 aa7.56□□□□□ -1.2
SF3B1-206ENST00000462613 MAP2K1Q02750 393 aaPredicted RBP7.56□□□□□ -1.2
SF3B1-206ENST00000462613 PPIL2Q13356 520 aa7.56□□□□□ -1.2
SF3B1-206ENST00000462613 SNAPC2Q13487 334 aa7.56□□□□□ -1.2
SF3B1-206ENST00000462613 RAB3GAP1Q15042 981 aa7.56□□□□□ -1.2
SF3B1-206ENST00000462613 VPS53Q5VIR6 699 aa7.56□□□□□ -1.2
SF3B1-206ENST00000462613 SPRYD7Q5W111 196 aa7.56□□□□□ -1.2
SF3B1-206ENST00000462613 TATDN1Q6P1N9 297 aa7.56□□□□□ -1.2
SF3B1-206ENST00000462613 RALYLQ86SE5 291 aaKnown RBP7.56□□□□□ -1.2
SF3B1-206ENST00000462613 RASAL3Q86YV0 1011 aa7.56□□□□□ -1.2
SF3B1-206ENST00000462613 CLMNQ96JQ2 1002 aa7.56□□□□□ -1.2
SF3B1-206ENST00000462613 CNNM2Q9H8M5 875 aa7.56□□□□□ -1.2
SF3B1-206ENST00000462613 ARHGEF10LQ9HCE6 1279 aa7.56□□□□□ -1.2
SF3B1-206ENST00000462613 EPB41L4AQ9HCS5 686 aaPredicted RBP7.56□□□□□ -1.2
SF3B1-206ENST00000462613 ANAPC4Q9UJX5 808 aa7.56□□□□□ -1.2
SF3B1-206ENST00000462613 SNCAIPQ9Y6H5 919 aa7.56□□□□□ -1.2
SF3B1-206ENST00000462613 ZHX2Q9Y6X8 837 aa7.56□□□□□ -1.2
SF3B1-206ENST00000462613 MYH6P13533 1939 aa7.56□□□□□ -1.2
SF3B1-206ENST00000462613 GREB1LQ9C091 1923 aaPredicted RBP7.56□□□□□ -1.2
SF3B1-206ENST00000462613 CYP2D7A0A087X1C5 515 aa7.55□□□□□ -1.2
SF3B1-206ENST00000462613 C19orf81C9J6K1 198 aa7.55□□□□□ -1.2
SF3B1-206ENST00000462613 CXCL11O14625 94 aa7.55□□□□□ -1.2
SF3B1-206ENST00000462613 CA12O43570 354 aa7.55□□□□□ -1.2
SF3B1-206ENST00000462613 RANBP6O60518 1105 aaKnown RBP7.55□□□□□ -1.2
SF3B1-206ENST00000462613 ALDH1A1P00352 501 aa7.55□□□□□ -1.2
SF3B1-206ENST00000462613 GH2P01242 217 aa7.55□□□□□ -1.2
SF3B1-206ENST00000462613 CYP2D6P10635 497 aa7.55□□□□□ -1.2
SF3B1-206ENST00000462613 CETPP11597 493 aa7.55□□□□□ -1.2
SF3B1-206ENST00000462613 ZKSCAN1P17029 563 aaPredicted RBP7.55□□□□□ -1.2
SF3B1-206ENST00000462613 PTPRAP18433 802 aa7.55□□□□□ -1.2
SF3B1-206ENST00000462613 SHMT1P34896 483 aa7.55□□□□□ -1.2
SF3B1-206ENST00000462613 USP14P54578 494 aa7.55□□□□□ -1.2
SF3B1-206ENST00000462613 HAND2P61296 217 aa7.55□□□□□ -1.2
SF3B1-206ENST00000462613 GABPAQ06546 454 aa7.55□□□□□ -1.2
SF3B1-206ENST00000462613 MKRN3Q13064 507 aaKnown RBP7.55□□□□□ -1.2
SF3B1-206ENST00000462613 PABPC4Q13310 644 aaKnown RBP eCLIP7.55□□□□□ -1.2
SF3B1-206ENST00000462613 CCDC178Q5BJE1 867 aa7.55□□□□□ -1.2
SF3B1-206ENST00000462613 RRP12Q5JTH9 1297 aaKnown RBP7.55□□□□□ -1.2
SF3B1-206ENST00000462613 AKNAD1Q5T1N1 836 aa7.55□□□□□ -1.2
SF3B1-206ENST00000462613 FASTKD5Q7L8L6 764 aaKnown RBP7.55□□□□□ -1.2
SF3B1-206ENST00000462613 IQCA1Q86XH1 822 aa7.55□□□□□ -1.2
SF3B1-206ENST00000462613 STK11IPQ8N1F8 1099 aa7.55□□□□□ -1.2
SF3B1-206ENST00000462613 ZNF280CQ8ND82 737 aa7.55□□□□□ -1.2
SF3B1-206ENST00000462613 ESR2Q92731 530 aa7.55□□□□□ -1.2
SF3B1-206ENST00000462613 DYNLL2Q96FJ2 89 aa7.55□□□□□ -1.2
SF3B1-206ENST00000462613 KRT23Q9C075 422 aa7.55□□□□□ -1.2
SF3B1-206ENST00000462613 KANSL2Q9H9L4 492 aa7.55□□□□□ -1.2
SF3B1-206ENST00000462613 TMOD4Q9NZQ9 345 aa7.55□□□□□ -1.2
SF3B1-206ENST00000462613 ZBTB21Q9ULJ3 1066 aa7.55□□□□□ -1.2
SF3B1-206ENST00000462613 LOC285556D6RIA3 1793 aa7.55□□□□□ -1.2
SF3B1-206ENST00000462613 CCL15-CCL14A0A0B4J2E2 113 aa7.54□□□□□ -1.2
SF3B1-206ENST00000462613 TRIM75PA6NK02 468 aa7.54□□□□□ -1.2
SF3B1-206ENST00000462613 USP17L10C9JJH3 530 aa7.54□□□□□ -1.2
SF3B1-206ENST00000462613 IRF6O14896 467 aa7.54□□□□□ -1.2
SF3B1-206ENST00000462613 EPB41L2O43491 1005 aaKnown RBP7.54□□□□□ -1.2
SF3B1-206ENST00000462613 ATP2B2Q01814 1243 aa7.54□□□□□ -1.2
SF3B1-206ENST00000462613 ICA1Q05084 483 aa7.54□□□□□ -1.2
SF3B1-206ENST00000462613 CTDSPL2Q05D32 466 aa7.54□□□□□ -1.2
SF3B1-206ENST00000462613 SART3Q15020 963 aaKnown RBP7.54□□□□□ -1.2
SF3B1-206ENST00000462613 CCL15Q16663 113 aa7.54□□□□□ -1.2
SF3B1-206ENST00000462613 SLC44A5Q8NCS7 719 aa7.54□□□□□ -1.2
SF3B1-206ENST00000462613 STAG1Q8WVM7 1258 aa7.54□□□□□ -1.2
SF3B1-206ENST00000462613 MAP4K1Q92918 833 aa7.54□□□□□ -1.2
SF3B1-206ENST00000462613 WDR18Q9BV38 432 aa7.54□□□□□ -1.2
SF3B1-206ENST00000462613 DNAJC18Q9H819 358 aa7.54□□□□□ -1.2
SF3B1-206ENST00000462613 GOPCQ9HD26 462 aa7.54□□□□□ -1.2
SF3B1-206ENST00000462613 PNMA3Q9UL41 463 aa7.54□□□□□ -1.2
SF3B1-206ENST00000462613 RBM8AQ9Y5S9 174 aaKnown RBP7.54□□□□□ -1.2
SF3B1-206ENST00000462613 ERICH2A1L162 156 aa7.53□□□□□ -1.2
SF3B1-206ENST00000462613 FAM155AB1AL88 458 aaPredicted RBP7.53□□□□□ -1.2
SF3B1-206ENST00000462613 ORC4O43929 436 aa7.53□□□□□ -1.2
SF3B1-206ENST00000462613 AOC2O75106 756 aa7.53□□□□□ -1.2
SF3B1-206ENST00000462613 PRDM1O75626 825 aa7.53□□□□□ -1.2
SF3B1-206ENST00000462613 AKR1B1P15121 316 aa7.53□□□□□ -1.2
Retrieved 100 of 20,778 RNA–protein pairs in 16.5 ms