RNA–Protein interactions for RNA: ENST00000439475.1

MCF2L-216, Transcript of MCF.2 cell line derived transforming sequence like, humanhuman

TSL 5

Gene MCF2L, Length 453 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MCF2L-216ENST00000439475 PDE1AP54750 535 aa12.57□□□□□ -0.4
MCF2L-216ENST00000439475 FBXO46Q6PJ61 603 aaPredicted RBP12.57□□□□□ -0.4
MCF2L-216ENST00000439475 PROCA1Q8NCQ7 364 aaPredicted RBP12.57□□□□□ -0.4
MCF2L-216ENST00000439475 EVI5LQ96CN4 794 aa12.57□□□□□ -0.4
MCF2L-216ENST00000439475 LNPKQ9C0E8 428 aa12.57□□□□□ -0.4
MCF2L-216ENST00000439475 PUS7LQ9H0K6 701 aaKnown RBP12.57□□□□□ -0.4
MCF2L-216ENST00000439475 EFCC1Q9HA90 598 aa12.57□□□□□ -0.4
MCF2L-216ENST00000439475 STAP2Q9UGK3 403 aa12.57□□□□□ -0.4
MCF2L-216ENST00000439475 USP17L10C9JJH3 530 aa12.56□□□□□ -0.4
MCF2L-216ENST00000439475 PRKAB2O43741 272 aa12.56□□□□□ -0.4
MCF2L-216ENST00000439475 IGHDP01880 384 aa12.56□□□□□ -0.4
MCF2L-216ENST00000439475 OSBPP22059 807 aa12.56□□□□□ -0.4
MCF2L-216ENST00000439475 ABCB5Q2M3G0 1257 aa12.56□□□□□ -0.4
MCF2L-216ENST00000439475 SLFNL1Q499Z3 407 aa12.56□□□□□ -0.4
MCF2L-216ENST00000439475 SH3D19Q5HYK7 790 aa12.56□□□□□ -0.4
MCF2L-216ENST00000439475 GIMAP6Q6P9H5 292 aa12.56□□□□□ -0.4
MCF2L-216ENST00000439475 CHD1LQ86WJ1 897 aa12.56□□□□□ -0.4
MCF2L-216ENST00000439475 TICAM2Q86XR7 235 aa12.56□□□□□ -0.4
MCF2L-216ENST00000439475 CD99L2Q8TCZ2 262 aa12.56□□□□□ -0.4
MCF2L-216ENST00000439475 OTUD7AQ8TE49 926 aaPredicted RBP12.56□□□□□ -0.4
MCF2L-216ENST00000439475 STRBPQ96SI9 672 aaKnown RBP12.56□□□□□ -0.4
MCF2L-216ENST00000439475 DNAJC18Q9H819 358 aa12.56□□□□□ -0.4
MCF2L-216ENST00000439475 ZBTB21Q9ULJ3 1066 aa12.56□□□□□ -0.4
MCF2L-216ENST00000439475 AGTPBP1Q9UPW5 1226 aa12.56□□□□□ -0.4
MCF2L-216ENST00000439475 USP17L12C9JPN9 530 aa12.55□□□□□ -0.4
MCF2L-216ENST00000439475 USP17L21D6R901 530 aa12.55□□□□□ -0.4
MCF2L-216ENST00000439475 GNRH1P01148 92 aa12.55□□□□□ -0.4
MCF2L-216ENST00000439475 GH2P01242 217 aa12.55□□□□□ -0.4
MCF2L-216ENST00000439475 APPP05067 770 aa12.55□□□□□ -0.4
MCF2L-216ENST00000439475 HOXD10P28358 340 aa12.55□□□□□ -0.4
MCF2L-216ENST00000439475 BACE1P56817 501 aa12.55□□□□□ -0.4
MCF2L-216ENST00000439475 MOGSQ13724 837 aa12.55□□□□□ -0.4
MCF2L-216ENST00000439475 RRP1BQ14684 758 aaKnown RBP12.55□□□□□ -0.4
MCF2L-216ENST00000439475 GPAT2Q6NUI2 795 aa12.55□□□□□ -0.4
MCF2L-216ENST00000439475 C17orf99Q6UX52 265 aa12.55□□□□□ -0.4
MCF2L-216ENST00000439475 CCDC84Q86UT8 332 aaPredicted RBP12.55□□□□□ -0.4
MCF2L-216ENST00000439475 SMCR8Q8TEV9 937 aaPredicted RBP12.55□□□□□ -0.4
MCF2L-216ENST00000439475 OSBP2Q969R2 916 aa12.55□□□□□ -0.4
MCF2L-216ENST00000439475 CCDC17Q96LX7 622 aa12.55□□□□□ -0.4
MCF2L-216ENST00000439475 NACAP1Q9BZK3 213 aa12.55□□□□□ -0.4
MCF2L-216ENST00000439475 ARPP21Q9UBL0 812 aaPredicted RBP12.55□□□□□ -0.4
MCF2L-216ENST00000439475 SALL3Q9BXA9 1300 aa12.55□□□□□ -0.4
MCF2L-216ENST00000439475 ATAD5Q96QE3 1844 aa12.55□□□□□ -0.4
MCF2L-216ENST00000439475 TRIM6-TRIM34B2RNG4 842 aa12.54□□□□□ -0.4
MCF2L-216ENST00000439475 PATL2C9JE40 543 aaKnown RBP12.54□□□□□ -0.4
MCF2L-216ENST00000439475 MPHOSPH10O00566 681 aaKnown RBP12.54□□□□□ -0.4
MCF2L-216ENST00000439475 GPAA1O43292 621 aa12.54□□□□□ -0.4
MCF2L-216ENST00000439475 USP14P54578 494 aa12.54□□□□□ -0.4
MCF2L-216ENST00000439475 HMGCS2P54868 508 aa12.54□□□□□ -0.4
MCF2L-216ENST00000439475 PRMT2P55345 433 aa12.54□□□□□ -0.4
MCF2L-216ENST00000439475 NUCB1Q02818 461 aa12.54□□□□□ -0.4
MCF2L-216ENST00000439475 GABPAQ06546 454 aa12.54□□□□□ -0.4
MCF2L-216ENST00000439475 RAB3GAP1Q15042 981 aa12.54□□□□□ -0.4
MCF2L-216ENST00000439475 C12orf60Q5U649 245 aa12.54□□□□□ -0.4
MCF2L-216ENST00000439475 USP17L2Q6R6M4 530 aa12.54□□□□□ -0.4
MCF2L-216ENST00000439475 OTOP1Q7RTM1 612 aa12.54□□□□□ -0.4
MCF2L-216ENST00000439475 FEZ1Q99689 392 aa12.54□□□□□ -0.4
MCF2L-216ENST00000439475 CPA4Q9UI42 421 aa12.54□□□□□ -0.4
MCF2L-216ENST00000439475 SIPA1L1O43166 1804 aa12.53□□□□□ -0.4
MCF2L-216ENST00000439475 NAV1Q8NEY1 1877 aa12.53□□□□□ -0.4
MCF2L-216ENST00000439475 CHGBP05060 677 aa12.53□□□□□ -0.4
MCF2L-216ENST00000439475 CYP2C8P10632 490 aa12.53□□□□□ -0.4
MCF2L-216ENST00000439475 SHMT1P34896 483 aa12.53□□□□□ -0.4
MCF2L-216ENST00000439475 TDO2P48775 406 aa12.53□□□□□ -0.4
MCF2L-216ENST00000439475 IRX6P78412 446 aaPredicted RBP12.53□□□□□ -0.4
MCF2L-216ENST00000439475 MTMR2Q13614 643 aa12.53□□□□□ -0.4
MCF2L-216ENST00000439475 SBK1Q52WX2 424 aa12.53□□□□□ -0.4
MCF2L-216ENST00000439475 ZNF287Q9HBT7 754 aa12.53□□□□□ -0.4
MCF2L-216ENST00000439475 FRMD4AQ9P2Q2 1039 aaPredicted RBP12.53□□□□□ -0.4
MCF2L-216ENST00000439475 PCNTO95613 3336 aa12.53□□□□□ -0.4
MCF2L-216ENST00000439475 PHIPQ8WWQ0 1821 aa12.53□□□□□ -0.4
MCF2L-216ENST00000439475 MINDY4BA8MYZ0 360 aa12.52□□□□□ -0.41
MCF2L-216ENST00000439475 FMNL1O95466 1100 aaPredicted RBP12.52□□□□□ -0.41
MCF2L-216ENST00000439475 SLC3A2P08195 630 aaKnown RBP12.52□□□□□ -0.41
MCF2L-216ENST00000439475 CYP2D6P10635 497 aa12.52□□□□□ -0.41
MCF2L-216ENST00000439475 GCLCP48506 637 aaPredicted RBP12.52□□□□□ -0.41
MCF2L-216ENST00000439475 CDK8P49336 464 aa12.52□□□□□ -0.41
MCF2L-216ENST00000439475 IRX3P78415 501 aaPredicted RBP12.52□□□□□ -0.41
MCF2L-216ENST00000439475 LACTBP83111 547 aaPredicted RBP12.52□□□□□ -0.41
MCF2L-216ENST00000439475 ZMYM1Q5SVZ6 1142 aa12.52□□□□□ -0.41
MCF2L-216ENST00000439475 CTR9Q6PD62 1173 aa12.52□□□□□ -0.41
MCF2L-216ENST00000439475 TMEM179Q6ZVK1 233 aa12.52□□□□□ -0.41
MCF2L-216ENST00000439475 RILPL2Q969X0 211 aa12.52□□□□□ -0.41
MCF2L-216ENST00000439475 OSBPL3Q9H4L5 887 aa12.52□□□□□ -0.41
MCF2L-216ENST00000439475 MKNK2Q9HBH9 465 aa12.52□□□□□ -0.41
MCF2L-216ENST00000439475 HPS5Q9UPZ3 1129 aa12.52□□□□□ -0.41
MCF2L-216ENST00000439475 PTPN22Q9Y2R2 807 aa12.52□□□□□ -0.41
MCF2L-216ENST00000439475 PTPRFP10586 1907 aa12.51□□□□□ -0.41
MCF2L-216ENST00000439475 BAZ2AQ9UIF9 1905 aaKnown RBP12.51□□□□□ -0.41
MCF2L-216ENST00000439475 GSG1L2A8MUP6 293 aa12.51□□□□□ -0.41
MCF2L-216ENST00000439475 HOXA7P31268 230 aaPredicted RBP12.51□□□□□ -0.41
MCF2L-216ENST00000439475 PSMC4P43686 418 aa12.51□□□□□ -0.41
MCF2L-216ENST00000439475 FCGRTP55899 365 aa12.51□□□□□ -0.41
MCF2L-216ENST00000439475 JAG1P78504 1218 aa12.51□□□□□ -0.41
MCF2L-216ENST00000439475 TREML2Q5T2D2 321 aa12.51□□□□□ -0.41
MCF2L-216ENST00000439475 C16orf86Q6ZW13 317 aa12.51□□□□□ -0.41
MCF2L-216ENST00000439475 NBPF11Q86T75 865 aa12.51□□□□□ -0.41
MCF2L-216ENST00000439475 IFNL3Q8IZI9 196 aa12.51□□□□□ -0.41
MCF2L-216ENST00000439475 ZNF444Q8N0Y2 327 aaPredicted RBP12.51□□□□□ -0.41
MCF2L-216ENST00000439475 GTF3C2Q8WUA4 911 aaPredicted RBP12.51□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 118.8 ms