RNA–Protein interactions for RNA: ENST00000426576.5

CCDC88A-205, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 1 (best)

Gene CCDC88A, Length 4,500 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-205ENST00000426576 ZHX2Q9Y6X8 837 aa3.26□□□□□ -1.89
CCDC88A-205ENST00000426576 A2ML1A8K2U0 1454 aa3.26□□□□□ -1.89
CCDC88A-205ENST00000426576 TOPBP1Q92547 1522 aa3.26□□□□□ -1.89
CCDC88A-205ENST00000426576 KHNYNO15037 678 aaKnown RBP3.26□□□□□ -1.89
CCDC88A-205ENST00000426576 ZBED4O75132 1171 aa3.26□□□□□ -1.89
CCDC88A-205ENST00000426576 BAG3O95817 575 aa3.26□□□□□ -1.89
CCDC88A-205ENST00000426576 CLTBP09497 229 aa3.26□□□□□ -1.89
CCDC88A-205ENST00000426576 GNAT1P11488 350 aa3.26□□□□□ -1.89
CCDC88A-205ENST00000426576 NR1H3Q13133 447 aa3.26□□□□□ -1.89
CCDC88A-205ENST00000426576 ASTLQ6HA08 431 aaPredicted RBP3.26□□□□□ -1.89
CCDC88A-205ENST00000426576 TOGARAM2Q6ZUX3 1019 aa3.26□□□□□ -1.89
CCDC88A-205ENST00000426576 CCDC82Q8N4S0 544 aa3.26□□□□□ -1.89
CCDC88A-205ENST00000426576 PDILTQ8N807 584 aa3.26□□□□□ -1.89
CCDC88A-205ENST00000426576 SEPT8Q92599 483 aa3.26□□□□□ -1.89
CCDC88A-205ENST00000426576 LIN37Q96GY3 246 aaPredicted RBP3.26□□□□□ -1.89
CCDC88A-205ENST00000426576 FSD1Q9BTV5 496 aa3.26□□□□□ -1.89
CCDC88A-205ENST00000426576 C11orf84Q9BUA3 381 aaPredicted RBP3.26□□□□□ -1.89
CCDC88A-205ENST00000426576 IFIH1Q9BYX4 1025 aaKnown RBP3.26□□□□□ -1.89
CCDC88A-205ENST00000426576 ADGRL3Q9HAR2 1447 aa3.26□□□□□ -1.89
CCDC88A-205ENST00000426576 ZNF287Q9HBT7 754 aa3.26□□□□□ -1.89
CCDC88A-205ENST00000426576 IRAK4Q9NWZ3 460 aa3.26□□□□□ -1.89
CCDC88A-205ENST00000426576 DAXXQ9UER7 740 aaPredicted RBP3.26□□□□□ -1.89
CCDC88A-205ENST00000426576 USP17L3A6NCW0 530 aa3.25□□□□□ -1.89
CCDC88A-205ENST00000426576 USP17L4A6NCW7 530 aa3.25□□□□□ -1.89
CCDC88A-205ENST00000426576 KLRK1P26718 216 aa3.25□□□□□ -1.89
CCDC88A-205ENST00000426576 DGKQP52824 942 aa3.25□□□□□ -1.89
CCDC88A-205ENST00000426576 PFKPQ01813 784 aa3.25□□□□□ -1.89
CCDC88A-205ENST00000426576 NHLH1Q02575 133 aa3.25□□□□□ -1.89
CCDC88A-205ENST00000426576 MAPK6Q16659 721 aa3.25□□□□□ -1.89
CCDC88A-205ENST00000426576 LMBR1LQ6UX01 489 aa3.25□□□□□ -1.89
CCDC88A-205ENST00000426576 USP17L1Q7RTZ2 530 aa3.25□□□□□ -1.89
CCDC88A-205ENST00000426576 SNIP1Q8TAD8 396 aaKnown RBP3.25□□□□□ -1.89
CCDC88A-205ENST00000426576 BADQ92934 168 aa3.25□□□□□ -1.89
CCDC88A-205ENST00000426576 KIAA1143Q96AT1 154 aaPredicted RBP3.25□□□□□ -1.89
CCDC88A-205ENST00000426576 TRIM6Q9C030 488 aaPredicted RBP3.25□□□□□ -1.89
CCDC88A-205ENST00000426576 PALMDQ9NP74 551 aa3.25□□□□□ -1.89
CCDC88A-205ENST00000426576 ABI2Q9NYB9 513 aaPredicted RBP3.25□□□□□ -1.89
CCDC88A-205ENST00000426576 NOL12Q9UGY1 213 aaKnown RBP eCLIP3.25□□□□□ -1.89
CCDC88A-205ENST00000426576 PCDHB3Q9Y5E6 796 aa3.25□□□□□ -1.89
CCDC88A-205ENST00000426576 LRRC7Q96NW7 1537 aa3.25□□□□□ -1.89
CCDC88A-205ENST00000426576 TTLL8A6PVC2 850 aa3.25□□□□□ -1.89
CCDC88A-205ENST00000426576 MATR3P43243 847 aaKnown RBP eCLIP3.25□□□□□ -1.89
CCDC88A-205ENST00000426576 PSEN2P49810 448 aa3.25□□□□□ -1.89
CCDC88A-205ENST00000426576 GFPT1Q06210 699 aaPredicted RBP3.25□□□□□ -1.89
CCDC88A-205ENST00000426576 XRRA1Q6P2D8 792 aa3.25□□□□□ -1.89
CCDC88A-205ENST00000426576 PDZRN4Q6ZMN7 1036 aaPredicted RBP3.25□□□□□ -1.89
CCDC88A-205ENST00000426576 ERO1BQ86YB8 467 aa3.25□□□□□ -1.89
CCDC88A-205ENST00000426576 ANKRD13CQ8N6S4 541 aa3.25□□□□□ -1.89
CCDC88A-205ENST00000426576 ANKLE1Q8NAG6 615 aa3.25□□□□□ -1.89
CCDC88A-205ENST00000426576 SERBP1Q8NC51 408 aaKnown RBP eCLIP3.25□□□□□ -1.89
CCDC88A-205ENST00000426576 XPNPEP3Q9NQH7 507 aa3.25□□□□□ -1.89
CCDC88A-205ENST00000426576 CD207Q9UJ71 328 aa3.25□□□□□ -1.89
CCDC88A-205ENST00000426576 ATP10BO94823 1461 aa3.25□□□□□ -1.89
CCDC88A-205ENST00000426576 UGGT1Q9NYU2 1555 aa3.25□□□□□ -1.89
CCDC88A-205ENST00000426576 NPATQ14207 1427 aa3.25□□□□□ -1.89
CCDC88A-205ENST00000426576 MAGI2Q86UL8 1455 aa3.25□□□□□ -1.89
CCDC88A-205ENST00000426576 RHOBTB1O94844 696 aa3.25□□□□□ -1.89
CCDC88A-205ENST00000426576 SASH1O94885 1247 aa3.25□□□□□ -1.89
CCDC88A-205ENST00000426576 ABCB4P21439 1286 aa3.25□□□□□ -1.89
CCDC88A-205ENST00000426576 ZNF252P-AS1Q0IIN9 211 aa3.25□□□□□ -1.89
CCDC88A-205ENST00000426576 KYNUQ16719 465 aa3.25□□□□□ -1.89
CCDC88A-205ENST00000426576 USH1GQ495M9 461 aa3.25□□□□□ -1.89
CCDC88A-205ENST00000426576 SLC45A4Q5BKX6 768 aa3.25□□□□□ -1.89
CCDC88A-205ENST00000426576 TRIM22Q8IYM9 498 aa3.25□□□□□ -1.89
CCDC88A-205ENST00000426576 USHBP1Q8N6Y0 703 aa3.25□□□□□ -1.89
CCDC88A-205ENST00000426576 C7orf31Q8N865 590 aa3.25□□□□□ -1.89
CCDC88A-205ENST00000426576 NETO1Q8TDF5 533 aa3.25□□□□□ -1.89
CCDC88A-205ENST00000426576 SLC39A7Q92504 469 aa3.25□□□□□ -1.89
CCDC88A-205ENST00000426576 EDEM2Q9BV94 578 aa3.25□□□□□ -1.89
CCDC88A-205ENST00000426576 ZBTB3Q9H5J0 574 aa3.25□□□□□ -1.89
CCDC88A-205ENST00000426576 NDUFB9Q9Y6M9 179 aa3.25□□□□□ -1.89
CCDC88A-205ENST00000426576 TMEM2Q9UHN6 1383 aa3.25□□□□□ -1.89
CCDC88A-205ENST00000426576 RIMS1Q86UR5 1692 aaKnown RBP3.25□□□□□ -1.89
CCDC88A-205ENST00000426576 TNS2Q63HR2 1409 aa3.25□□□□□ -1.89
CCDC88A-205ENST00000426576 SYCE3A1L190 88 aa3.25□□□□□ -1.89
CCDC88A-205ENST00000426576 MAPK4P31152 587 aa3.25□□□□□ -1.89
CCDC88A-205ENST00000426576 ZNF76P36508 570 aa3.25□□□□□ -1.89
CCDC88A-205ENST00000426576 ADCYAP1R1P41586 468 aa3.25□□□□□ -1.89
CCDC88A-205ENST00000426576 TCP10Q12799 353 aa3.25□□□□□ -1.89
CCDC88A-205ENST00000426576 SPTY2D1Q68D10 685 aaPredicted RBP3.25□□□□□ -1.89
CCDC88A-205ENST00000426576 HEATR4Q86WZ0 1026 aa3.25□□□□□ -1.89
CCDC88A-205ENST00000426576 RGS22Q8NE09 1264 aa3.25□□□□□ -1.89
CCDC88A-205ENST00000426576 GPRC5AQ8NFJ5 357 aa3.25□□□□□ -1.89
CCDC88A-205ENST00000426576 NAF1Q96HR8 494 aaKnown RBP3.25□□□□□ -1.89
CCDC88A-205ENST00000426576 UNC93B1Q9H1C4 597 aa3.25□□□□□ -1.89
CCDC88A-205ENST00000426576 HIPK3Q9H422 1215 aa3.25□□□□□ -1.89
CCDC88A-205ENST00000426576 UBE2ZQ9H832 354 aaPredicted RBP3.25□□□□□ -1.89
CCDC88A-205ENST00000426576 SLAMF7Q9NQ25 335 aa3.25□□□□□ -1.89
CCDC88A-205ENST00000426576 SRP68Q9UHB9 627 aaKnown RBP3.25□□□□□ -1.89
CCDC88A-205ENST00000426576 SDK2Q58EX2 2172 aa3.25□□□□□ -1.89
CCDC88A-205ENST00000426576 RIMS2Q9UQ26 1411 aa3.24□□□□□ -1.89
CCDC88A-205ENST00000426576 DENND3A2RUS2 1198 aa3.24□□□□□ -1.89
CCDC88A-205ENST00000426576 TSPY1Q01534 308 aa3.24□□□□□ -1.89
CCDC88A-205ENST00000426576 TLE2Q04725 743 aa3.24□□□□□ -1.89
CCDC88A-205ENST00000426576 CCDC96Q2M329 555 aa3.24□□□□□ -1.89
CCDC88A-205ENST00000426576 CFAP70Q5T0N1 1121 aa3.24□□□□□ -1.89
CCDC88A-205ENST00000426576 CABP7Q86V35 215 aa3.24□□□□□ -1.89
CCDC88A-205ENST00000426576 SCUBE3Q8IX30 993 aa3.24□□□□□ -1.89
CCDC88A-205ENST00000426576 SIRT2Q8IXJ6 389 aa3.24□□□□□ -1.89
CCDC88A-205ENST00000426576 BANK1Q8NDB2 785 aa3.24□□□□□ -1.89
Retrieved 100 of 20,778 RNA–protein pairs in 37.5 ms