RNA–Protein interactions for RNA: ENST00000409225.2

CHMP3-203, Transcript of charged multivesicular body protein 3, humanhuman

TSL 2 BASIC

Gene CHMP3, Length 1,099 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP3-203ENST00000409225 ERVK-24P63145 666 aa20.61■□□□□ 0.89
CHMP3-203ENST00000409225 JAG1P78504 1218 aa20.61■□□□□ 0.89
CHMP3-203ENST00000409225 TFCP2Q12800 502 aa20.61■□□□□ 0.89
CHMP3-203ENST00000409225 PLEKHH3Q7Z736 793 aa20.61■□□□□ 0.89
CHMP3-203ENST00000409225 APBA2Q99767 749 aa20.61■□□□□ 0.89
CHMP3-203ENST00000409225 LBHD1Q9BQE6 289 aaPredicted RBP20.61■□□□□ 0.89
CHMP3-203ENST00000409225 SHROOM1Q2M3G4 852 aaPredicted RBP20.6■□□□□ 0.89
CHMP3-203ENST00000409225 MORN1Q5T089 497 aa20.6■□□□□ 0.89
CHMP3-203ENST00000409225 SPATA5Q8NB90 893 aa20.6■□□□□ 0.89
CHMP3-203ENST00000409225 SH3RF3Q8TEJ3 882 aaPredicted RBP20.6■□□□□ 0.89
CHMP3-203ENST00000409225 NEUROD6Q96NK8 337 aa20.6■□□□□ 0.89
CHMP3-203ENST00000409225 SENP6Q9GZR1 1112 aaPredicted RBP20.6■□□□□ 0.89
CHMP3-203ENST00000409225 CWC22Q9HCG8 908 aaKnown RBP20.6■□□□□ 0.89
CHMP3-203ENST00000409225 SMC4Q9NTJ3 1288 aa20.6■□□□□ 0.89
CHMP3-203ENST00000409225 PI4KBQ9UBF8 816 aa20.6■□□□□ 0.89
CHMP3-203ENST00000409225 AKAP2Q9Y2D5 859 aa20.6■□□□□ 0.89
CHMP3-203ENST00000409225 C19orf81C9J6K1 198 aa20.59■□□□□ 0.89
CHMP3-203ENST00000409225 ASNSP08243 561 aa20.59■□□□□ 0.89
CHMP3-203ENST00000409225 ZNF697Q5TEC3 545 aa20.59■□□□□ 0.89
CHMP3-203ENST00000409225 SIPA1L1O43166 1804 aa20.58■□□□□ 0.89
CHMP3-203ENST00000409225 USP17L10C9JJH3 530 aa20.58■□□□□ 0.89
CHMP3-203ENST00000409225 GDF11O95390 407 aa20.58■□□□□ 0.89
CHMP3-203ENST00000409225 ATN1P54259 1190 aaPredicted RBP20.58■□□□□ 0.89
CHMP3-203ENST00000409225 ALDH1L2Q3SY69 923 aa20.58■□□□□ 0.89
CHMP3-203ENST00000409225 GORABQ5T7V8 394 aa20.58■□□□□ 0.89
CHMP3-203ENST00000409225 NOL10Q9BSC4 688 aaKnown RBP20.58■□□□□ 0.89
CHMP3-203ENST00000409225 TRIM34Q9BYJ4 488 aa20.58■□□□□ 0.89
CHMP3-203ENST00000409225 HDAC5Q9UQL6 1122 aa20.58■□□□□ 0.89
CHMP3-203ENST00000409225 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP20.58■□□□□ 0.89
CHMP3-203ENST00000409225 E9PSI1 815 aa20.57■□□□□ 0.88
CHMP3-203ENST00000409225 GTF3C2Q8WUA4 911 aaPredicted RBP20.57■□□□□ 0.88
CHMP3-203ENST00000409225 DHX36Q9H2U1 1008 aaKnown RBP20.57■□□□□ 0.88
CHMP3-203ENST00000409225 DNAJC18Q9H819 358 aa20.57■□□□□ 0.88
CHMP3-203ENST00000409225 NDUFB9Q9Y6M9 179 aa20.57■□□□□ 0.88
CHMP3-203ENST00000409225 FRMPD3Q5JV73 1810 aa20.56■□□□□ 0.88
CHMP3-203ENST00000409225 MAP2K5Q13163 448 aa20.56■□□□□ 0.88
CHMP3-203ENST00000409225 MFSD14CQ5VZR4 134 aa20.56■□□□□ 0.88
CHMP3-203ENST00000409225 POTEEQ6S8J3 1075 aa20.56■□□□□ 0.88
CHMP3-203ENST00000409225 MAPKAPK5Q8IW41 473 aa20.56■□□□□ 0.88
CHMP3-203ENST00000409225 CRACR2BQ8N4Y2 399 aaPredicted RBP20.56■□□□□ 0.88
CHMP3-203ENST00000409225 MEIS3Q99687 375 aa20.56■□□□□ 0.88
CHMP3-203ENST00000409225 AATFQ9NY61 560 aaKnown RBP eCLIP20.56■□□□□ 0.88
CHMP3-203ENST00000409225 LRP2BPQ9P2M1 347 aa20.56■□□□□ 0.88
CHMP3-203ENST00000409225 PRKAG2Q9UGJ0 569 aa20.56■□□□□ 0.88
CHMP3-203ENST00000409225 MAST2Q6P0Q8 1798 aa20.56■□□□□ 0.88
CHMP3-203ENST00000409225 WDR78Q5VTH9 848 aa20.55■□□□□ 0.88
CHMP3-203ENST00000409225 TGFBRAP1Q8WUH2 860 aa20.55■□□□□ 0.88
CHMP3-203ENST00000409225 EDC3Q96F86 508 aaKnown RBP20.55■□□□□ 0.88
CHMP3-203ENST00000409225 CDX2Q99626 313 aaPredicted RBP20.55■□□□□ 0.88
CHMP3-203ENST00000409225 EMILIN3Q9NT22 766 aa20.55■□□□□ 0.88
CHMP3-203ENST00000409225 FLRT1Q9NZU1 646 aa20.55■□□□□ 0.88
CHMP3-203ENST00000409225 ZBTB21Q9ULJ3 1066 aa20.55■□□□□ 0.88
CHMP3-203ENST00000409225 SRGAP3O43295 1099 aa20.54■□□□□ 0.88
CHMP3-203ENST00000409225 ARID4AP29374 1257 aaPredicted RBP20.54■□□□□ 0.88
CHMP3-203ENST00000409225 CNGA1P29973 690 aa20.54■□□□□ 0.88
CHMP3-203ENST00000409225 RTP1P59025 263 aa20.54■□□□□ 0.88
CHMP3-203ENST00000409225 DDX20Q9UHI6 824 aaKnown RBP20.54■□□□□ 0.88
CHMP3-203ENST00000409225 NOB1Q9ULX3 412 aaKnown RBP20.54■□□□□ 0.88
CHMP3-203ENST00000409225 LAMA2P24043 3122 aaKnown RBP20.53■□□□□ 0.88
CHMP3-203ENST00000409225 CNMDO75829 334 aa20.53■□□□□ 0.88
CHMP3-203ENST00000409225 MCAMP43121 646 aa20.53■□□□□ 0.88
CHMP3-203ENST00000409225 USP17L2Q6R6M4 530 aa20.53■□□□□ 0.88
CHMP3-203ENST00000409225 FOXP4Q8IVH2 680 aaPredicted RBP20.53■□□□□ 0.88
CHMP3-203ENST00000409225 MAFAQ8NHW3 353 aaPredicted RBP20.53■□□□□ 0.88
CHMP3-203ENST00000409225 PALD1Q9ULE6 856 aa20.53■□□□□ 0.88
CHMP3-203ENST00000409225 ATP11BQ9Y2G3 1177 aa20.53■□□□□ 0.88
CHMP3-203ENST00000409225 FLT1P17948 1338 aa20.53■□□□□ 0.88
CHMP3-203ENST00000409225 VCANP13611 3396 aa20.52■□□□□ 0.88
CHMP3-203ENST00000409225 GLRX3O76003 335 aaKnown RBP20.52■□□□□ 0.88
CHMP3-203ENST00000409225 BAG3O95817 575 aa20.52■□□□□ 0.88
CHMP3-203ENST00000409225 ZYXQ15942 572 aaKnown RBP20.52■□□□□ 0.88
CHMP3-203ENST00000409225 NAA16Q6N069 864 aaPredicted RBP20.52■□□□□ 0.88
CHMP3-203ENST00000409225 GINM1Q9NU53 330 aa20.52■□□□□ 0.88
CHMP3-203ENST00000409225 SAP30BPQ9UHR5 308 aaKnown RBP20.52■□□□□ 0.88
CHMP3-203ENST00000409225 RABGAP1Q9Y3P9 1069 aa20.52■□□□□ 0.88
CHMP3-203ENST00000409225 DNAH12Q6ZR08 3092 aa20.52■□□□□ 0.87
CHMP3-203ENST00000409225 PLCG2P16885 1265 aa20.51■□□□□ 0.87
CHMP3-203ENST00000409225 CCNA1P78396 465 aa20.51■□□□□ 0.87
CHMP3-203ENST00000409225 ATP2B2Q01814 1243 aa20.51■□□□□ 0.87
CHMP3-203ENST00000409225 SLFN5Q08AF3 891 aa20.51■□□□□ 0.87
CHMP3-203ENST00000409225 SHHQ15465 462 aa20.51■□□□□ 0.87
CHMP3-203ENST00000409225 METTL16Q86W50 562 aaKnown RBP20.51■□□□□ 0.87
CHMP3-203ENST00000409225 LPAR1Q92633 364 aa20.51■□□□□ 0.87
CHMP3-203ENST00000409225 API5Q9BZZ5 524 aaKnown RBP20.51■□□□□ 0.87
CHMP3-203ENST00000409225 SEMA6BQ9H3T3 888 aa20.51■□□□□ 0.87
CHMP3-203ENST00000409225 SNRKQ9NRH2 765 aa20.51■□□□□ 0.87
CHMP3-203ENST00000409225 SLC15A5A6NIM6 579 aa20.5■□□□□ 0.87
CHMP3-203ENST00000409225 DNM1LO00429 736 aa20.5■□□□□ 0.87
CHMP3-203ENST00000409225 MSCO60682 206 aa20.5■□□□□ 0.87
CHMP3-203ENST00000409225 CYP2C19P33261 490 aa20.5■□□□□ 0.87
CHMP3-203ENST00000409225 C9orf50Q5SZB4 431 aa20.5■□□□□ 0.87
CHMP3-203ENST00000409225 MYLIPQ8WY64 445 aa20.5■□□□□ 0.87
CHMP3-203ENST00000409225 FEZ1Q99689 392 aa20.5■□□□□ 0.87
CHMP3-203ENST00000409225 PRDM5Q9NQX1 630 aaPredicted RBP20.5■□□□□ 0.87
CHMP3-203ENST00000409225 LTBP2Q14767 1821 aa20.5■□□□□ 0.87
CHMP3-203ENST00000409225 SPTBN5Q9NRC6 3674 aaKnown RBP20.5■□□□□ 0.87
CHMP3-203ENST00000409225 EYSQ5T1H1 3165 aa20.49■□□□□ 0.87
CHMP3-203ENST00000409225 USP17L15C9J2P7 530 aa20.49■□□□□ 0.87
CHMP3-203ENST00000409225 USP17L13C9JLJ4 530 aa20.49■□□□□ 0.87
CHMP3-203ENST00000409225 USP17L11C9JVI0 530 aa20.49■□□□□ 0.87
Retrieved 100 of 20,778 RNA–protein pairs in 87.2 ms