RNA–Protein interactions for RNA: ENST00000405805.5

HMGB1-206, Transcript of high mobility group box 1, humanhuman

APPRIS P1 TSL 2 BASIC

Gene HMGB1, Length 4,199 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-206ENST00000405805 CTIFO43310 598 aaKnown RBP13.48□□□□□ -0.25
HMGB1-206ENST00000405805 CDC25BP30305 580 aa13.48□□□□□ -0.25
HMGB1-206ENST00000405805 DZIP3Q86Y13 1208 aaKnown RBP13.48□□□□□ -0.25
HMGB1-206ENST00000405805 SMARCC2Q8TAQ2 1214 aa13.48□□□□□ -0.25
HMGB1-206ENST00000405805 PXDNQ92626 1479 aa13.48□□□□□ -0.25
HMGB1-206ENST00000405805 A0A1W2PQ27 194 aa13.48□□□□□ -0.25
HMGB1-206ENST00000405805 A0A1W2PQ64 194 aa13.48□□□□□ -0.25
HMGB1-206ENST00000405805 A0A1W2PQD8 194 aa13.48□□□□□ -0.25
HMGB1-206ENST00000405805 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP13.48□□□□□ -0.256e-7■■□□□ 13.1
HMGB1-206ENST00000405805 MACROD2A1Z1Q3 448 aa13.48□□□□□ -0.25
HMGB1-206ENST00000405805 GOLGA6L9A6NEM1 432 aa13.48□□□□□ -0.25
HMGB1-206ENST00000405805 TSPY2A6NKD2 308 aa13.48□□□□□ -0.25
HMGB1-206ENST00000405805 CUTAO60888 179 aa13.48□□□□□ -0.25
HMGB1-206ENST00000405805 PDE6AP16499 860 aa13.48□□□□□ -0.25
HMGB1-206ENST00000405805 UBA7P41226 1012 aa13.48□□□□□ -0.25
HMGB1-206ENST00000405805 MTIF2P46199 727 aaKnown RBP13.48□□□□□ -0.25
HMGB1-206ENST00000405805 RBM6P78332 1123 aaKnown RBP13.48□□□□□ -0.25
HMGB1-206ENST00000405805 SARM1Q6SZW1 724 aa13.48□□□□□ -0.25
HMGB1-206ENST00000405805 TOGARAM2Q6ZUX3 1019 aa13.48□□□□□ -0.25
HMGB1-206ENST00000405805 CCDC148Q8NFR7 591 aa13.48□□□□□ -0.25
HMGB1-206ENST00000405805 POLR3EQ9NVU0 708 aa13.48□□□□□ -0.25
HMGB1-206ENST00000405805 ANKRD26Q9UPS8 1709 aa13.48□□□□□ -0.25
HMGB1-206ENST00000405805 ENC1O14682 589 aa13.47□□□□□ -0.25
HMGB1-206ENST00000405805 CCDC172P0C7W6 258 aa13.47□□□□□ -0.25
HMGB1-206ENST00000405805 CDC27P30260 824 aa13.47□□□□□ -0.25
HMGB1-206ENST00000405805 STIM1Q13586 685 aa13.47□□□□□ -0.25
HMGB1-206ENST00000405805 AP1ARQ63HQ0 302 aa13.47□□□□□ -0.25
HMGB1-206ENST00000405805 RBM28Q9NW13 759 aaKnown RBP13.47□□□□□ -0.25
HMGB1-206ENST00000405805 REREQ9P2R6 1566 aa13.47□□□□□ -0.25
HMGB1-206ENST00000405805 C1orf167Q5SNV9 1468 aa13.47□□□□□ -0.25
HMGB1-206ENST00000405805 SPATA31A3Q5VYP0 1347 aa13.47□□□□□ -0.25
HMGB1-206ENST00000405805 KRT9P35527 623 aa13.47□□□□□ -0.25
HMGB1-206ENST00000405805 MRPS25P82663 173 aaKnown RBP13.47□□□□□ -0.25
HMGB1-206ENST00000405805 CCDC178Q5BJE1 867 aa13.47□□□□□ -0.25
HMGB1-206ENST00000405805 PIK3AP1Q6ZUJ8 805 aa13.47□□□□□ -0.25
HMGB1-206ENST00000405805 NOSTRINQ8IVI9 506 aa13.47□□□□□ -0.25
HMGB1-206ENST00000405805 CDK5RAP3Q96JB5 506 aa13.47□□□□□ -0.25
HMGB1-206ENST00000405805 WDR24Q96S15 920 aa13.47□□□□□ -0.25
HMGB1-206ENST00000405805 NCAPGQ9BPX3 1015 aa13.47□□□□□ -0.25
HMGB1-206ENST00000405805 PCDHB6Q9Y5E3 794 aa13.47□□□□□ -0.25
HMGB1-206ENST00000405805 UBR1Q8IWV7 1749 aa13.47□□□□□ -0.25
HMGB1-206ENST00000405805 CYB5R4Q7L1T6 521 aa13.47□□□□□ -0.25
HMGB1-206ENST00000405805 GNL3LQ9NVN8 582 aaKnown RBP13.47□□□□□ -0.25
HMGB1-206ENST00000405805 USP42Q9H9J4 1324 aaKnown RBP13.46□□□□□ -0.25
HMGB1-206ENST00000405805 CCDC194A0A1B0GVG4 234 aa13.46□□□□□ -0.25
HMGB1-206ENST00000405805 ECM2O94769 699 aaPredicted RBP13.46□□□□□ -0.25
HMGB1-206ENST00000405805 TCIRG1Q13488 830 aa13.46□□□□□ -0.25
HMGB1-206ENST00000405805 TBC1D10CQ8IV04 446 aa13.46□□□□□ -0.25
HMGB1-206ENST00000405805 EPSTI1Q96J88 318 aa13.46□□□□□ -0.25
HMGB1-206ENST00000405805 TEX13AQ9BXU3 409 aaPredicted RBP13.46□□□□□ -0.25
HMGB1-206ENST00000405805 ZSWIM5Q9P217 1185 aa13.46□□□□□ -0.25
HMGB1-206ENST00000405805 BCAMP50895 628 aa13.46□□□□□ -0.25
HMGB1-206ENST00000405805 RNASE9P60153 205 aaKnown RBP13.46□□□□□ -0.25
HMGB1-206ENST00000405805 CDC5LQ99459 802 aaKnown RBP13.46□□□□□ -0.25
HMGB1-206ENST00000405805 MKNK2Q9HBH9 465 aa13.46□□□□□ -0.25
HMGB1-206ENST00000405805 MED23Q9ULK4 1368 aa13.46□□□□□ -0.25
HMGB1-206ENST00000405805 OTUD6BQ8N6M0 293 aa13.46□□□□□ -0.25
HMGB1-206ENST00000405805 ACRBPQ8NEB7 543 aa13.46□□□□□ -0.25
HMGB1-206ENST00000405805 PARD6BQ9BYG5 372 aa13.46□□□□□ -0.25
HMGB1-206ENST00000405805 KRT23Q9C075 422 aa13.46□□□□□ -0.25
HMGB1-206ENST00000405805 PDE11AQ9HCR9 933 aa13.46□□□□□ -0.25
HMGB1-206ENST00000405805 FEZ2Q9UHY8 353 aaPredicted RBP13.46□□□□□ -0.25
HMGB1-206ENST00000405805 WDR17Q8IZU2 1322 aa13.46□□□□□ -0.26
HMGB1-206ENST00000405805 CYP2D7A0A087X1C5 515 aa13.46□□□□□ -0.26
HMGB1-206ENST00000405805 PSDA5PKW4 1024 aaPredicted RBP13.46□□□□□ -0.26
HMGB1-206ENST00000405805 EZRP15311 586 aaKnown RBP13.46□□□□□ -0.26
HMGB1-206ENST00000405805 ARID5AQ03989 594 aa13.46□□□□□ -0.26
HMGB1-206ENST00000405805 TDRD12Q587J7 1177 aaKnown RBP13.46□□□□□ -0.26
HMGB1-206ENST00000405805 SHC4Q6S5L8 630 aa13.46□□□□□ -0.26
HMGB1-206ENST00000405805 USP49Q70CQ1 688 aa13.46□□□□□ -0.26
HMGB1-206ENST00000405805 ESR2Q92731 530 aa13.46□□□□□ -0.26
HMGB1-206ENST00000405805 CSRNP2Q9H175 543 aa13.46□□□□□ -0.26
HMGB1-206ENST00000405805 RNF41Q9H4P4 317 aaPredicted RBP13.46□□□□□ -0.26
HMGB1-206ENST00000405805 A0A1B0GUA9 196 aa13.45□□□□□ -0.26
HMGB1-206ENST00000405805 ERVV-2B6SEH9 535 aa13.45□□□□□ -0.26
HMGB1-206ENST00000405805 MYO1BO43795 1136 aa13.45□□□□□ -0.26
HMGB1-206ENST00000405805 PRR29P0C7W0 189 aa13.45□□□□□ -0.26
HMGB1-206ENST00000405805 CASP14P31944 242 aa13.45□□□□□ -0.26
HMGB1-206ENST00000405805 STAT6P42226 847 aa13.45□□□□□ -0.26
HMGB1-206ENST00000405805 EXOSC10Q01780 885 aaKnown RBP13.45□□□□□ -0.26
HMGB1-206ENST00000405805 ATG9AQ7Z3C6 839 aa13.45□□□□□ -0.26
HMGB1-206ENST00000405805 DLG5Q8TDM6 1919 aa13.45□□□□□ -0.26
HMGB1-206ENST00000405805 ERLIN2O94905 339 aa13.45□□□□□ -0.26
HMGB1-206ENST00000405805 GUCY1A2P33402 732 aa13.45□□□□□ -0.26
HMGB1-206ENST00000405805 GRIN1Q05586 938 aa13.45□□□□□ -0.26
HMGB1-206ENST00000405805 ODF2Q5BJF6 829 aa13.45□□□□□ -0.26
HMGB1-206ENST00000405805 FAM47AQ5JRC9 791 aa13.45□□□□□ -0.26
HMGB1-206ENST00000405805 AMOTL1Q8IY63 956 aa13.45□□□□□ -0.26
HMGB1-206ENST00000405805 IFNL3Q8IZI9 196 aa13.45□□□□□ -0.26
HMGB1-206ENST00000405805 ENGASEQ8NFI3 743 aa13.45□□□□□ -0.26
HMGB1-206ENST00000405805 PIH1D3Q9NQM4 214 aaKnown RBP13.45□□□□□ -0.26
HMGB1-206ENST00000405805 MCAMP43121 646 aa13.45□□□□□ -0.26
HMGB1-206ENST00000405805 KCNQ4P56696 695 aa13.45□□□□□ -0.26
HMGB1-206ENST00000405805 RILPL1Q5EBL4 403 aa13.45□□□□□ -0.26
HMGB1-206ENST00000405805 SH3TC1Q8TE82 1336 aa13.44□□□□□ -0.26
HMGB1-206ENST00000405805 SYNRGQ9UMZ2 1314 aa13.44□□□□□ -0.26
HMGB1-206ENST00000405805 TEX33O43247 280 aa13.44□□□□□ -0.26
HMGB1-206ENST00000405805 EPS15P42566 896 aa13.44□□□□□ -0.26
HMGB1-206ENST00000405805 KANK3Q6NY19 840 aa13.44□□□□□ -0.26
HMGB1-206ENST00000405805 GNL3Q9BVP2 549 aaKnown RBP eCLIP13.44□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 406.5 ms