RNA–Protein interactions for RNA: ENST00000309546.7

LIME1-201, Transcript of Lck interacting transmembrane adaptor 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIME1, Length 1,178 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIME1-201ENST00000309546 EDC3Q96F86 508 aaKnown RBP23.69■■□□□ 1.38
LIME1-201ENST00000309546 ZBTB21Q9ULJ3 1066 aa23.69■■□□□ 1.38
LIME1-201ENST00000309546 DDX60LQ5H9U9 1706 aaKnown RBP23.69■■□□□ 1.38
LIME1-201ENST00000309546 PABPC4Q13310 644 aaKnown RBP eCLIP23.68■■□□□ 1.38
LIME1-201ENST00000309546 RIOK1Q9BRS2 568 aaKnown RBP23.68■■□□□ 1.38
LIME1-201ENST00000309546 BOLA2Q9H3K6 86 aa23.68■■□□□ 1.38
LIME1-201ENST00000309546 TMOD4Q9NZQ9 345 aa23.68■■□□□ 1.38
LIME1-201ENST00000309546 ZNF532Q9HCE3 1301 aa23.67■■□□□ 1.38
LIME1-201ENST00000309546 TNPO2O14787 897 aaKnown RBP23.67■■□□□ 1.38
LIME1-201ENST00000309546 GRK4P32298 578 aa23.67■■□□□ 1.38
LIME1-201ENST00000309546 SH3D19Q5HYK7 790 aa23.67■■□□□ 1.38
LIME1-201ENST00000309546 WDR18Q9BV38 432 aa23.67■■□□□ 1.38
LIME1-201ENST00000309546 GABRQQ9UN88 632 aa23.67■■□□□ 1.38
LIME1-201ENST00000309546 BACE1P56817 501 aa23.66■■□□□ 1.38
LIME1-201ENST00000309546 PRPF38BQ5VTL8 546 aaKnown RBP23.66■■□□□ 1.38
LIME1-201ENST00000309546 TTC6Q86TZ1 520 aa23.66■■□□□ 1.38
LIME1-201ENST00000309546 LRRCC1Q9C099 1032 aa23.66■■□□□ 1.38
LIME1-201ENST00000309546 PAG1Q9NWQ8 432 aa23.66■■□□□ 1.38
LIME1-201ENST00000309546 BIN2Q9UBW5 565 aaPredicted RBP23.66■■□□□ 1.38
LIME1-201ENST00000309546 SERPINB13Q9UIV8 391 aa23.66■■□□□ 1.38
LIME1-201ENST00000309546 MYH7P12883 1935 aa23.66■■□□□ 1.38
LIME1-201ENST00000309546 GH2P01242 217 aa23.65■■□□□ 1.38
LIME1-201ENST00000309546 MTFR1Q15390 333 aa23.65■■□□□ 1.38
LIME1-201ENST00000309546 CRNKL1Q9BZJ0 848 aaKnown RBP23.65■■□□□ 1.38
LIME1-201ENST00000309546 ASCC2Q9H1I8 757 aaPredicted RBP23.65■■□□□ 1.38
LIME1-201ENST00000309546 EHD4Q9H223 541 aa23.65■■□□□ 1.38
LIME1-201ENST00000309546 GINM1Q9NU53 330 aa23.65■■□□□ 1.38
LIME1-201ENST00000309546 BRCA2P51587 3418 aa23.65■■□□□ 1.38
LIME1-201ENST00000309546 USP17L10C9JJH3 530 aa23.64■■□□□ 1.37
LIME1-201ENST00000309546 SMARCA5O60264 1052 aaPredicted RBP23.64■■□□□ 1.37
LIME1-201ENST00000309546 POLR3DP05423 398 aaPredicted RBP23.64■■□□□ 1.37
LIME1-201ENST00000309546 IRX3P78415 501 aaPredicted RBP23.64■■□□□ 1.37
LIME1-201ENST00000309546 FAM110CQ1W6H9 321 aa23.64■■□□□ 1.37
LIME1-201ENST00000309546 DOCK3Q8IZD9 2030 aa23.64■■□□□ 1.37
LIME1-201ENST00000309546 C19orf81C9J6K1 198 aa23.63■■□□□ 1.37
LIME1-201ENST00000309546 ATP5JP18859 108 aa23.63■■□□□ 1.37
LIME1-201ENST00000309546 GCLCP48506 637 aaPredicted RBP23.63■■□□□ 1.37
LIME1-201ENST00000309546 FLT3LGP49771 235 aa23.63■■□□□ 1.37
LIME1-201ENST00000309546 LCORLQ8N3X6 602 aa23.63■■□□□ 1.37
LIME1-201ENST00000309546 MCM9Q9NXL9 1143 aa23.63■■□□□ 1.37
LIME1-201ENST00000309546 TAOK2Q9UL54 1235 aa23.63■■□□□ 1.37
LIME1-201ENST00000309546 TCRBV5S4A2TA0A5A2 114 aa23.62■■□□□ 1.37
LIME1-201ENST00000309546 TATDN1Q6P1N9 297 aa23.62■■□□□ 1.37
LIME1-201ENST00000309546 SLAIN1Q8ND83 568 aa23.62■■□□□ 1.37
LIME1-201ENST00000309546 SDR42E1Q8WUS8 393 aa23.62■■□□□ 1.37
LIME1-201ENST00000309546 COA7Q96BR5 231 aa23.62■■□□□ 1.37
LIME1-201ENST00000309546 FEZ1Q99689 392 aa23.62■■□□□ 1.37
LIME1-201ENST00000309546 HAUS7Q99871 368 aa23.62■■□□□ 1.37
LIME1-201ENST00000309546 ADCY3O60266 1144 aa23.61■■□□□ 1.37
LIME1-201ENST00000309546 PLCD1P51178 756 aa23.61■■□□□ 1.37
LIME1-201ENST00000309546 UBXN2AP68543 259 aa23.61■■□□□ 1.37
LIME1-201ENST00000309546 RAB3GAP1Q15042 981 aa23.61■■□□□ 1.37
LIME1-201ENST00000309546 ZYXQ15942 572 aaKnown RBP23.61■■□□□ 1.37
LIME1-201ENST00000309546 SLFNL1Q499Z3 407 aa23.61■■□□□ 1.37
LIME1-201ENST00000309546 CERKLQ49MI3 558 aaPredicted RBP23.61■■□□□ 1.37
LIME1-201ENST00000309546 DDX24Q9GZR7 859 aaKnown RBP eCLIP23.61■■□□□ 1.374e-7■■■■■ 27.4
LIME1-201ENST00000309546 ARMT1Q9H993 441 aa23.61■■□□□ 1.37
LIME1-201ENST00000309546 MYH8P13535 1937 aa23.61■■□□□ 1.37
LIME1-201ENST00000309546 ADD2P35612 726 aa23.6■■□□□ 1.37
LIME1-201ENST00000309546 ABCB5Q2M3G0 1257 aa23.6■■□□□ 1.37
LIME1-201ENST00000309546 BAZ2AQ9UIF9 1905 aaKnown RBP23.6■■□□□ 1.37
LIME1-201ENST00000309546 CCL5P13501 91 aa23.59■■□□□ 1.37
LIME1-201ENST00000309546 ELNP15502 786 aa23.59■■□□□ 1.37
LIME1-201ENST00000309546 EVX2Q03828 476 aa23.59■■□□□ 1.37
LIME1-201ENST00000309546 USP17L2Q6R6M4 530 aa23.59■■□□□ 1.37
LIME1-201ENST00000309546 MKI67P46013 3256 aaKnown RBP23.59■■□□□ 1.37
LIME1-201ENST00000309546 MBD4O95243 580 aa23.58■■□□□ 1.37
LIME1-201ENST00000309546 HOXA7P31268 230 aaPredicted RBP23.58■■□□□ 1.37
LIME1-201ENST00000309546 SHMT1P34896 483 aa23.58■■□□□ 1.37
LIME1-201ENST00000309546 P2RX7Q99572 595 aaKnown RBP23.58■■□□□ 1.37
LIME1-201ENST00000309546 RNF208Q9H0X6 261 aa23.58■■□□□ 1.37
LIME1-201ENST00000309546 CABP5Q9NP86 173 aa23.58■■□□□ 1.37
LIME1-201ENST00000309546 DCP1AQ9NPI6 582 aaPredicted RBP23.58■■□□□ 1.37
LIME1-201ENST00000309546 EMILIN3Q9NT22 766 aa23.58■■□□□ 1.37
LIME1-201ENST00000309546 CYP2D6P10635 497 aa23.57■■□□□ 1.36
LIME1-201ENST00000309546 HERVK_113P62684 666 aa23.57■■□□□ 1.36
LIME1-201ENST00000309546 IRF5Q13568 498 aa23.57■■□□□ 1.36
LIME1-201ENST00000309546 MPHOSPH10O00566 681 aaKnown RBP23.56■■□□□ 1.36
LIME1-201ENST00000309546 PRKAB2O43741 272 aa23.56■■□□□ 1.36
LIME1-201ENST00000309546 PEX10O60683 326 aa23.56■■□□□ 1.36
LIME1-201ENST00000309546 CHGBP05060 677 aa23.56■■□□□ 1.36
LIME1-201ENST00000309546 SHISA4Q96DD7 197 aa23.56■■□□□ 1.36
LIME1-201ENST00000309546 UNC93B1Q9H1C4 597 aa23.56■■□□□ 1.36
LIME1-201ENST00000309546 MORF4L1Q9UBU8 362 aa23.56■■□□□ 1.36
LIME1-201ENST00000309546 INHAP05111 366 aa23.55■■□□□ 1.36
LIME1-201ENST00000309546 GABPAQ06546 454 aa23.55■■□□□ 1.36
LIME1-201ENST00000309546 NKX2-3Q8TAU0 364 aa23.55■■□□□ 1.36
LIME1-201ENST00000309546 ACER1Q8TDN7 264 aa23.55■■□□□ 1.36
LIME1-201ENST00000309546 PXYLP1Q8TE99 480 aa23.55■■□□□ 1.36
LIME1-201ENST00000309546 DCTPP1Q9H773 170 aa23.55■■□□□ 1.36
LIME1-201ENST00000309546 TXNRD2Q9NNW7 524 aa23.55■■□□□ 1.36
LIME1-201ENST00000309546 ECHDC1Q9NTX5 307 aa23.55■■□□□ 1.36
LIME1-201ENST00000309546 USP14P54578 494 aa23.54■■□□□ 1.36
LIME1-201ENST00000309546 SEPT2Q15019 361 aa23.54■■□□□ 1.36
LIME1-201ENST00000309546 UBE3CQ15386 1083 aa23.54■■□□□ 1.36
LIME1-201ENST00000309546 TSHZ3Q63HK5 1081 aa23.54■■□□□ 1.36
LIME1-201ENST00000309546 ZSCAN25Q6NSZ9 544 aa23.54■■□□□ 1.36
LIME1-201ENST00000309546 SLC44A5Q8NCS7 719 aa23.54■■□□□ 1.36
LIME1-201ENST00000309546 GPATCH3Q96I76 525 aa23.54■■□□□ 1.36
LIME1-201ENST00000309546 PAGR1Q9BTK6 254 aa23.54■■□□□ 1.36
Retrieved 100 of 20,778 RNA–protein pairs in 37.3 ms