RNA–Protein interactions for RNA: YJL154C

VPS35, Transcript of Endosomal subunit of membrane-associated retromer complex, yeastyeast

Gene VPS35, Length 2,835 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
VPS35YJL154C ZPS1Q12512 249 aa2.44□□□□□ -2.02
VPS35YJL154C YER175W-AQ8TGU4 54 aa2.44□□□□□ -2.02
VPS35YJL154C TPK2P06245 380 aa2.44□□□□□ -2.02
VPS35YJL154C PET122P10355 254 aa2.44□□□□□ -2.02
VPS35YJL154C YPK1P12688 680 aaKnown RBP2.44□□□□□ -2.02
VPS35YJL154C SWI4P25302 1093 aaKnown RBP2.44□□□□□ -2.02
VPS35YJL154C PRE2P30656 287 aaKnown RBP2.44□□□□□ -2.02
VPS35YJL154C ESF2P53743 316 aaKnown RBP2.44□□□□□ -2.02
VPS35YJL154C BUD21Q08492 214 aaPredicted RBP2.44□□□□□ -2.02
VPS35YJL154C RPN13O13563 156 aa2.43□□□□□ -2.02
VPS35YJL154C PDE1P22434 369 aa2.43□□□□□ -2.02
VPS35YJL154C YCL049CP25577 312 aa2.43□□□□□ -2.02
VPS35YJL154C CNE1P27825 502 aa2.43□□□□□ -2.02
VPS35YJL154C PRP45P28004 379 aaPredicted RBP2.43□□□□□ -2.02
VPS35YJL154C BEM3P32873 1128 aa2.43□□□□□ -2.02
VPS35YJL154C MTH1P35198 433 aa2.43□□□□□ -2.02
VPS35YJL154C EXO84P38261 753 aa2.43□□□□□ -2.02
VPS35YJL154C MUP3P38734 546 aa2.43□□□□□ -2.02
VPS35YJL154C NAB3P38996 802 aaKnown RBP RIP-Chip data2.43□□□□□ -2.02not detected
VPS35YJL154C COS12P53053 380 aa2.43□□□□□ -2.02
VPS35YJL154C YML131WQ03102 365 aa2.43□□□□□ -2.02
VPS35YJL154C WHI2P12611 486 aa2.43□□□□□ -2.02
VPS35YJL154C ARP2P32381 391 aaKnown RBP2.43□□□□□ -2.02
VPS35YJL154C SDH8P38345 138 aa2.43□□□□□ -2.02
VPS35YJL154C NPR3P38742 1146 aa2.43□□□□□ -2.02
VPS35YJL154C FUN12P39730 1002 aaKnown RBP2.43□□□□□ -2.02
VPS35YJL154C TMN2Q04562 672 aa2.43□□□□□ -2.02
VPS35YJL154C CSR1Q06705 408 aaKnown RBP2.43□□□□□ -2.02
VPS35YJL154C GFD2P25370 566 aaKnown RBP2.42□□□□□ -2.02
VPS35YJL154C RER1P25560 188 aa2.42□□□□□ -2.02
VPS35YJL154C TDP1P38319 544 aa2.42□□□□□ -2.02
VPS35YJL154C LAS21P40367 830 aa2.42□□□□□ -2.02
VPS35YJL154C YIL161WP40449 235 aaKnown RBP2.42□□□□□ -2.02
VPS35YJL154C UBX6P47049 396 aa2.42□□□□□ -2.02
VPS35YJL154C COG2P53271 262 aa2.42□□□□□ -2.02
VPS35YJL154C SNF12P53628 566 aa2.42□□□□□ -2.02
VPS35YJL154C APM1Q00776 475 aaPredicted RBP2.42□□□□□ -2.02
VPS35YJL154C ICL2Q12031 575 aa2.42□□□□□ -2.02
VPS35YJL154C STE4P18851 423 aa2.42□□□□□ -2.02
VPS35YJL154C MAM1P40065 302 aa2.42□□□□□ -2.02
VPS35YJL154C YIL166CP40445 542 aa2.42□□□□□ -2.02
VPS35YJL154C CCT7P42943 550 aaKnown RBP2.42□□□□□ -2.02
VPS35YJL154C COQ6P53318 479 aa2.42□□□□□ -2.02
VPS35YJL154C CPR8P53728 308 aa2.42□□□□□ -2.02
VPS35YJL154C EIS1Q05050 843 aaKnown RBP2.42□□□□□ -2.02
VPS35YJL154C YDL121CQ07541 149 aa2.42□□□□□ -2.02
VPS35YJL154C IRC10Q08118 586 aa2.42□□□□□ -2.02
VPS35YJL154C SLK19Q08581 821 aaKnown RBP2.42□□□□□ -2.02
VPS35YJL154C COX17Q12287 69 aa2.42□□□□□ -2.02
VPS35YJL154C TAF3Q12297 353 aa2.42□□□□□ -2.02
VPS35YJL154C SIN3P22579 1536 aa2.42□□□□□ -2.02
VPS35YJL154C YCR061WP25639 631 aa2.41□□□□□ -2.02
VPS35YJL154C ARB1P40024 610 aaKnown RBP2.41□□□□□ -2.02
VPS35YJL154C RPT2P40327 437 aaKnown RBP2.41□□□□□ -2.02
VPS35YJL154C OPT1P40897 799 aa2.41□□□□□ -2.02
VPS35YJL154C ASN1P49089 572 aaKnown RBP2.41□□□□□ -2.02
VPS35YJL154C IMA1P53051 589 aa2.41□□□□□ -2.02
VPS35YJL154C VPS73P53142 486 aaKnown RBP2.41□□□□□ -2.02
VPS35YJL154C AIM6Q07716 390 aa2.41□□□□□ -2.02
VPS35YJL154C NEW1Q08972 1196 aaKnown RBP2.41□□□□□ -2.02
VPS35YJL154C AHA1Q12449 350 aaKnown RBP2.41□□□□□ -2.02
VPS35YJL154C RVB2Q12464 471 aaKnown RBP2.41□□□□□ -2.02
VPS35YJL154C YLR302CO13544 120 aa2.41□□□□□ -2.02
VPS35YJL154C CPA2P03965 1118 aaKnown RBP2.41□□□□□ -2.02
VPS35YJL154C HEM1P09950 548 aaPredicted RBP2.41□□□□□ -2.02
VPS35YJL154C RNR3P21672 869 aaKnown RBP2.41□□□□□ -2.02
VPS35YJL154C UBC1P21734 215 aaKnown RBP2.41□□□□□ -2.02
VPS35YJL154C SAT4P25333 603 aaKnown RBP2.41□□□□□ -2.02
VPS35YJL154C RPF2P36160 344 aaKnown RBP2.41□□□□□ -2.02
VPS35YJL154C YBR138CP38277 524 aa2.41□□□□□ -2.02
VPS35YJL154C WAR1Q03631 944 aa2.41□□□□□ -2.02
VPS35YJL154C OPY2Q06810 360 aa2.41□□□□□ -2.02
VPS35YJL154C ERG27Q12452 347 aaKnown RBP2.41□□□□□ -2.02
VPS35YJL154C DRS2P39524 1355 aa2.41□□□□□ -2.02
VPS35YJL154C ATP2P00830 511 aaKnown RBP2.41□□□□□ -2.02
VPS35YJL154C LEU2P04173 364 aaPredicted RBP2.41□□□□□ -2.02
VPS35YJL154C AAC1P04710 309 aa2.41□□□□□ -2.02
VPS35YJL154C MTF2P10849 440 aa2.41□□□□□ -2.02
VPS35YJL154C NCP1P16603 691 aaKnown RBP2.41□□□□□ -2.02
VPS35YJL154C CDC5P32562 705 aa2.41□□□□□ -2.02
VPS35YJL154C FRD1P32614 470 aaKnown RBP2.41□□□□□ -2.02
VPS35YJL154C YMC2P38087 329 aa2.41□□□□□ -2.02
VPS35YJL154C VID27P40157 782 aa2.41□□□□□ -2.02
VPS35YJL154C RIC1P40395 1056 aa2.41□□□□□ -2.02
VPS35YJL154C ARC35P53731 342 aaKnown RBP2.41□□□□□ -2.02
VPS35YJL154C FMP30Q02883 468 aa2.41□□□□□ -2.02
VPS35YJL154C MTG1Q03151 367 aaPredicted RBP2.41□□□□□ -2.02
VPS35YJL154C SSP2Q08646 371 aa2.41□□□□□ -2.02
VPS35YJL154C NBP2Q12163 236 aa2.41□□□□□ -2.02
VPS35YJL154C NKP1Q12493 238 aa2.41□□□□□ -2.02
VPS35YJL154C PNO1Q99216 274 aaKnown RBP2.41□□□□□ -2.02
VPS35YJL154C IST3P40565 148 aaPredicted RBP2.4□□□□□ -2.03
VPS35YJL154C YRB30P53107 440 aaPredicted RBP2.4□□□□□ -2.03
VPS35YJL154C UBP16Q02863 499 aa2.4□□□□□ -2.03
VPS35YJL154C USA1Q03714 838 aa2.4□□□□□ -2.03
VPS35YJL154C YML053CQ04978 212 aa2.4□□□□□ -2.03
VPS35YJL154C BI2P03873 423 aa2.4□□□□□ -2.03
VPS35YJL154C ADE5,7P07244 802 aaKnown RBP2.4□□□□□ -2.03
VPS35YJL154C ILV2P07342 687 aaKnown RBP2.4□□□□□ -2.03
VPS35YJL154C SPO16P17122 198 aa2.4□□□□□ -2.03
Retrieved 100 of 5,963 RNA–protein pairs in 354 ms