RNA–Protein interactions for RNA: YHR027C

RPN1, Transcript of Non-ATPase base subunit of the 19S RP of the 26S proteasome, yeast

Gene RPN1, Length 2,982 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
RPN1	YHR027C	GAL1	P04385	528 aa		3.19	□□□□□ -1.9
RPN1	YHR027C	ILV2	P07342	687 aa	Known RBP	3.19	□□□□□ -1.9
RPN1	YHR027C	TUB1	P09733	447 aa	Known RBP	3.19	□□□□□ -1.9
RPN1	YHR027C	CLN2	P20438	545 aa		3.19	□□□□□ -1.9
RPN1	YHR027C	PRP5	P21372	849 aa	Predicted RBP	3.19	□□□□□ -1.9
RPN1	YHR027C	POL4	P25615	582 aa		3.19	□□□□□ -1.9
RPN1	YHR027C	RAD27	P26793	382 aa		3.19	□□□□□ -1.9
RPN1	YHR027C	PMT2	P31382	759 aa		3.19	□□□□□ -1.9
RPN1	YHR027C	CCR4	P31384	837 aa	Known RBP	3.19	□□□□□ -1.9
RPN1	YHR027C	MRS6	P32864	603 aa	Known RBP	3.19	□□□□□ -1.9
RPN1	YHR027C	NUP133	P36161	1157 aa		3.19	□□□□□ -1.9
RPN1	YHR027C	GRS1	P38088	690 aa	Known RBP	3.19	□□□□□ -1.9
RPN1	YHR027C	KTR4	P38131	464 aa		3.19	□□□□□ -1.9
RPN1	YHR027C	APM3	P38153	483 aa		3.19	□□□□□ -1.9
RPN1	YHR027C	YBR138C	P38277	524 aa		3.19	□□□□□ -1.9
RPN1	YHR027C	TSC10	P38342	320 aa		3.19	□□□□□ -1.9
RPN1	YHR027C	IMD2	P38697	523 aa	Known RBP	3.19	□□□□□ -1.9
RPN1	YHR027C	YHL050C	P38721	697 aa		3.19	□□□□□ -1.9
RPN1	YHR027C	APE4	P38821	490 aa		3.19	□□□□□ -1.9
RPN1	YHR027C	YJR061W	P40355	935 aa		3.19	□□□□□ -1.9
RPN1	YHR027C	CGR1	P53188	120 aa		3.19	□□□□□ -1.9
RPN1	YHR027C	PIB2	P53191	635 aa		3.19	□□□□□ -1.9
RPN1	YHR027C	FMP48	P53233	369 aa		3.19	□□□□□ -1.9
RPN1	YHR027C	SOL4	P53315	255 aa		3.19	□□□□□ -1.9
RPN1	YHR027C	CAF40	P53829	373 aa		3.19	□□□□□ -1.9
RPN1	YHR027C	PET117	Q02771	107 aa		3.19	□□□□□ -1.9
RPN1	YHR027C	NOG1	Q02892	647 aa	Known RBP	3.19	□□□□□ -1.9
RPN1	YHR027C	YDR249C	Q03787	373 aa		3.19	□□□□□ -1.9
RPN1	YHR027C	SWA2	Q06677	668 aa		3.19	□□□□□ -1.9
RPN1	YHR027C	IRC3	Q06683	689 aa		3.19	□□□□□ -1.9
RPN1	YHR027C	SSF2	Q12153	453 aa	Predicted RBP	3.19	□□□□□ -1.9
RPN1	YHR027C	YEL077C	Q3E7X8	1277 aa		3.19	□□□□□ -1.9
RPN1	YHR027C	TUF1	P02992	437 aa	Known RBP	3.18	□□□□□ -1.9
RPN1	YHR027C	COR1	P07256	457 aa		3.18	□□□□□ -1.9
RPN1	YHR027C	HO	P09932	586 aa		3.18	□□□□□ -1.9
RPN1	YHR027C	PEP5	P12868	1029 aa		3.18	□□□□□ -1.9
RPN1	YHR027C	RAD4	P14736	754 aa		3.18	□□□□□ -1.9
RPN1	YHR027C	DIT2	P21595	489 aa		3.18	□□□□□ -1.9
RPN1	YHR027C	MRPL8	P22353	238 aa		3.18	□□□□□ -1.9
RPN1	YHR027C	CMK1	P27466	446 aa	Known RBP	3.18	□□□□□ -1.9
RPN1	YHR027C	KTR2	P33550	425 aa		3.18	□□□□□ -1.9
RPN1	YHR027C	MRPL7	P36519	292 aa		3.18	□□□□□ -1.9
RPN1	YHR027C	GLY1	P37303	387 aa	Known RBP	3.18	□□□□□ -1.9
RPN1	YHR027C	GRX7	P38068	203 aa		3.18	□□□□□ -1.9
RPN1	YHR027C	PDX3	P38075	228 aa	Known RBP	3.18	□□□□□ -1.9
RPN1	YHR027C	AKL1	P38080	1108 aa	Known RBP	3.18	□□□□□ -1.9
RPN1	YHR027C	LNP1	P38878	278 aa		3.18	□□□□□ -1.9
RPN1	YHR027C	SSP120	P39931	234 aa	Known RBP	3.18	□□□□□ -1.9
RPN1	YHR027C	GID8	P40208	455 aa		3.18	□□□□□ -1.9
RPN1	YHR027C	EPS1	P40557	701 aa		3.18	□□□□□ -1.9
RPN1	YHR027C	LSM8	P47093	109 aa	Known RBP	3.18	□□□□□ -1.9
RPN1	YHR027C	YGR153W	P48238	217 aa		3.18	□□□□□ -1.9
RPN1	YHR027C	DIE2	P50076	525 aa		3.18	□□□□□ -1.9
RPN1	YHR027C	CPR6	P53691	371 aa	Known RBP	3.18	□□□□□ -1.9
RPN1	YHR027C	YMR279C	Q03263	540 aa		3.18	□□□□□ -1.9
RPN1	YHR027C	CWC21	Q03375	135 aa	Known RBP	3.18	□□□□□ -1.9
RPN1	YHR027C	CRR1	Q05790	422 aa		3.18	□□□□□ -1.9
RPN1	YHR027C	SKI7	Q08491	747 aa	Predicted RBP	3.18	□□□□□ -1.9
RPN1	YHR027C	CWC2	Q12046	339 aa	Predicted RBP	3.18	□□□□□ -1.9
RPN1	YHR027C	ATG31	Q12421	196 aa		3.18	□□□□□ -1.9
RPN1	YHR027C	ERG12	P07277	443 aa		3.18	□□□□□ -1.9
RPN1	YHR027C	NCP1	P16603	691 aa	Known RBP	3.18	□□□□□ -1.9
RPN1	YHR027C	EXO70	P19658	623 aa		3.18	□□□□□ -1.9
RPN1	YHR027C	AEP2	P22136	580 aa		3.18	□□□□□ -1.9
RPN1	YHR027C	RRT12	P25381	491 aa		3.18	□□□□□ -1.9
RPN1	YHR027C	RSC6	P25632	483 aa		3.18	□□□□□ -1.9
RPN1	YHR027C	KIP2	P28743	706 aa		3.18	□□□□□ -1.9
RPN1	YHR027C	KRE6	P32486	720 aa		3.18	□□□□□ -1.9
RPN1	YHR027C	CDC13	P32797	924 aa	Known RBP	3.18	□□□□□ -1.9
RPN1	YHR027C	ANR2	P36090	516 aa	Predicted RBP	3.18	□□□□□ -1.9
RPN1	YHR027C	COS111	P38308	924 aa		3.18	□□□□□ -1.9
RPN1	YHR027C	YBR285W	P38354	144 aa		3.18	□□□□□ -1.9
RPN1	YHR027C	RRP8	P38961	392 aa	Known RBP	3.18	□□□□□ -1.9
RPN1	YHR027C	MNN9	P39107	395 aa	Known RBP	3.18	□□□□□ -1.9
RPN1	YHR027C	MTW1	P39731	289 aa		3.18	□□□□□ -1.9
RPN1	YHR027C	LSM1	P47017	172 aa	Known RBP	3.18	□□□□□ -1.9
RPN1	YHR027C	RSM26	P47141	266 aa		3.18	□□□□□ -1.9
RPN1	YHR027C	SSY1	Q03770	852 aa		3.18	□□□□□ -1.9
RPN1	YHR027C	BNA7	Q04066	261 aa		3.18	□□□□□ -1.9
RPN1	YHR027C	TIF35	Q04067	274 aa	Known RBP	3.18	□□□□□ -1.9
RPN1	YHR027C	MHR1	Q06630	226 aa		3.18	□□□□□ -1.9
RPN1	YHR027C	LOT6	Q07923	191 aa		3.18	□□□□□ -1.9
RPN1	YHR027C	CBP6	P07253	162 aa	Predicted RBP	3.18	□□□□□ -1.9
RPN1	YHR027C	NFT1	P0CE68	1218 aa		3.18	□□□□□ -1.9
RPN1	YHR027C	VPS33	P20795	691 aa		3.18	□□□□□ -1.9
RPN1	YHR027C	CBP3	P21560	335 aa		3.18	□□□□□ -1.9
RPN1	YHR027C	RNR3	P21672	869 aa	Known RBP	3.18	□□□□□ -1.9
RPN1	YHR027C	DBF20	P32328	564 aa		3.18	□□□□□ -1.9
RPN1	YHR027C	TFB1	P32776	642 aa		3.18	□□□□□ -1.9
RPN1	YHR027C	YPT52	P36018	234 aa	Known RBP	3.18	□□□□□ -1.9
RPN1	YHR027C	RIM4	P38741	713 aa		3.18	□□□□□ -1.9
RPN1	YHR027C	YHR219W	P38900	624 aa		3.18	□□□□□ -1.9
RPN1	YHR027C	CCT3	P39077	534 aa	Known RBP	3.18	□□□□□ -1.9
RPN1	YHR027C	CEM1	P39525	442 aa		3.18	□□□□□ -1.9
RPN1	YHR027C	SEN34	P39707	275 aa		3.18	□□□□□ -1.9
RPN1	YHR027C	HPM1	P40481	377 aa		3.18	□□□□□ -1.9
RPN1	YHR027C	MAD3	P47074	515 aa		3.18	□□□□□ -1.9
RPN1	YHR027C	VTC4	P47075	721 aa		3.18	□□□□□ -1.9
RPN1	YHR027C	NIT3	P49954	291 aa		3.18	□□□□□ -1.9
RPN1	YHR027C	RIM8	P53179	542 aa		3.18	□□□□□ -1.9

Retrieved 100 of 5,963 RNA–protein pairs in 15.6 ms