RNA–Protein interactions for RNA: ENST00000636977.1

CLN3-253, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 2,969 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-253ENST00000636977 hCG_1642624A0A1W2PR95 340 aa17.14■□□□□ 0.33
CLN3-253ENST00000636977 ZNF827Q17R98 1081 aa17.14■□□□□ 0.33
CLN3-253ENST00000636977 INTS5Q6P9B9 1019 aaKnown RBP17.14■□□□□ 0.33
CLN3-253ENST00000636977 KRBA2Q6ZNG9 492 aa17.14■□□□□ 0.33
CLN3-253ENST00000636977 SHISA4Q96DD7 197 aa17.14■□□□□ 0.33
CLN3-253ENST00000636977 PCDHB6Q9Y5E3 794 aa17.14■□□□□ 0.33
CLN3-253ENST00000636977 EXOC5O00471 708 aa17.14■□□□□ 0.33
CLN3-253ENST00000636977 UBASH3AP57075 661 aa17.14■□□□□ 0.33
CLN3-253ENST00000636977 SYT10Q6XYQ8 523 aa17.14■□□□□ 0.33
CLN3-253ENST00000636977 USP49Q70CQ1 688 aa17.14■□□□□ 0.33
CLN3-253ENST00000636977 JMYQ8N9B5 988 aa17.14■□□□□ 0.33
CLN3-253ENST00000636977 FAM205CA6NFA0 338 aa17.13■□□□□ 0.33
CLN3-253ENST00000636977 IKBKBO14920 756 aa17.13■□□□□ 0.33
CLN3-253ENST00000636977 SERPINC1P01008 464 aa17.13■□□□□ 0.33
CLN3-253ENST00000636977 MMP1P03956 469 aa17.13■□□□□ 0.33
CLN3-253ENST00000636977 IFNAR1P17181 557 aa17.13■□□□□ 0.33
CLN3-253ENST00000636977 EIF5P55010 431 aaKnown RBP17.13■□□□□ 0.33
CLN3-253ENST00000636977 CERS3Q8IU89 383 aa17.13■□□□□ 0.33
CLN3-253ENST00000636977 EIF4ENIF1Q9NRA8 985 aaKnown RBP17.13■□□□□ 0.33
CLN3-253ENST00000636977 DISP2A7MBM2 1401 aa17.13■□□□□ 0.33
CLN3-253ENST00000636977 FAM237AA0A1B0GTK4 181 aa17.13■□□□□ 0.33
CLN3-253ENST00000636977 CUTAO60888 179 aa17.13■□□□□ 0.33
CLN3-253ENST00000636977 MYL5Q02045 173 aa17.13■□□□□ 0.33
CLN3-253ENST00000636977 RTN1Q16799 776 aa17.13■□□□□ 0.33
CLN3-253ENST00000636977 PDILTQ8N807 584 aa17.13■□□□□ 0.33
CLN3-253ENST00000636977 TPM4P67936 248 aa17.13■□□□□ 0.33
CLN3-253ENST00000636977 MDM2Q00987 491 aaPredicted RBP17.13■□□□□ 0.33
CLN3-253ENST00000636977 WTAPQ15007 396 aa17.13■□□□□ 0.33
CLN3-253ENST00000636977 ELF2Q15723 593 aa17.13■□□□□ 0.33
CLN3-253ENST00000636977 CFAP100Q494V2 611 aa17.13■□□□□ 0.33
CLN3-253ENST00000636977 INTS13Q9NVM9 706 aa17.13■□□□□ 0.33
CLN3-253ENST00000636977 LRP2BPQ9P2M1 347 aa17.13■□□□□ 0.33
CLN3-253ENST00000636977 CYP2D7A0A087X1C5 515 aa17.12■□□□□ 0.33
CLN3-253ENST00000636977 MINDY4BA8MYZ0 360 aa17.12■□□□□ 0.33
CLN3-253ENST00000636977 KRI1Q8N9T8 703 aaKnown RBP17.12■□□□□ 0.33
CLN3-253ENST00000636977 CCDC150Q8NCX0 1101 aa17.12■□□□□ 0.33
CLN3-253ENST00000636977 KIF18AQ8NI77 898 aa17.12■□□□□ 0.33
CLN3-253ENST00000636977 LRP5O75197 1615 aa17.12■□□□□ 0.33
CLN3-253ENST00000636977 CRKLP46109 303 aaKnown RBP17.12■□□□□ 0.33
CLN3-253ENST00000636977 UTP14AQ9BVJ6 771 aaKnown RBP17.12■□□□□ 0.33
CLN3-253ENST00000636977 DNAJC5Q9H3Z4 198 aa17.12■□□□□ 0.33
CLN3-253ENST00000636977 KCND1Q9NSA2 647 aa17.12■□□□□ 0.33
CLN3-253ENST00000636977 ABCF2Q9UG63 623 aa17.12■□□□□ 0.33
CLN3-253ENST00000636977 FBXO2Q9UK22 296 aaPredicted RBP17.12■□□□□ 0.33
CLN3-253ENST00000636977 CHD4Q14839 1912 aa17.12■□□□□ 0.33
CLN3-253ENST00000636977 POLR2DO15514 142 aaKnown RBP17.11■□□□□ 0.33
CLN3-253ENST00000636977 FMR1Q06787 632 aaKnown RBP eCLIP17.11■□□□□ 0.33
CLN3-253ENST00000636977 SYCP1Q15431 976 aa17.11■□□□□ 0.33
CLN3-253ENST00000636977 TRMT44Q8IYL2 757 aaKnown RBP17.11■□□□□ 0.33
CLN3-253ENST00000636977 CRACR2BQ8N4Y2 399 aaPredicted RBP17.11■□□□□ 0.33
CLN3-253ENST00000636977 STAG1Q8WVM7 1258 aa17.11■□□□□ 0.33
CLN3-253ENST00000636977 KRT23Q9C075 422 aa17.11■□□□□ 0.33
CLN3-253ENST00000636977 SERTAD1Q9UHV2 236 aa17.11■□□□□ 0.33
CLN3-253ENST00000636977 EVX2Q03828 476 aa17.11■□□□□ 0.33
CLN3-253ENST00000636977 CHRNDQ07001 517 aa17.11■□□□□ 0.33
CLN3-253ENST00000636977 KMT5BQ4FZB7 885 aa17.11■□□□□ 0.33
CLN3-253ENST00000636977 STK36Q9NRP7 1315 aa17.11■□□□□ 0.33
CLN3-253ENST00000636977 FANCGO15287 622 aa17.1■□□□□ 0.33
CLN3-253ENST00000636977 CYP7A1P22680 504 aa17.1■□□□□ 0.33
CLN3-253ENST00000636977 GYG1P46976 350 aa17.1■□□□□ 0.33
CLN3-253ENST00000636977 CNNM2Q9H8M5 875 aa17.1■□□□□ 0.33
CLN3-253ENST00000636977 ATP6V1AP38606 617 aa17.1■□□□□ 0.33
CLN3-253ENST00000636977 ITPK1Q13572 414 aa17.1■□□□□ 0.33
CLN3-253ENST00000636977 EARS2Q5JPH6 523 aaKnown RBP17.1■□□□□ 0.33
CLN3-253ENST00000636977 CABP5Q9NP86 173 aa17.1■□□□□ 0.33
CLN3-253ENST00000636977 MAN1B1Q9UKM7 699 aa17.1■□□□□ 0.33
CLN3-253ENST00000636977 PRDM1O75626 825 aa17.1■□□□□ 0.33
CLN3-253ENST00000636977 CAMTA2O94983 1202 aa17.1■□□□□ 0.33
CLN3-253ENST00000636977 PPARAQ07869 468 aa17.1■□□□□ 0.33
CLN3-253ENST00000636977 C3orf67Q6ZVT6 689 aa17.1■□□□□ 0.33
CLN3-253ENST00000636977 SMIM5Q71RC9 77 aa17.1■□□□□ 0.33
CLN3-253ENST00000636977 ZNF654Q8IZM8 581 aa17.1■□□□□ 0.33
CLN3-253ENST00000636977 FANCBQ8NB91 859 aa17.1■□□□□ 0.33
CLN3-253ENST00000636977 MED15Q96RN5 788 aa17.1■□□□□ 0.33
CLN3-253ENST00000636977 NIP7Q9Y221 180 aaKnown RBP eCLIP17.1■□□□□ 0.33
CLN3-253ENST00000636977 STRCQ7RTU9 1775 aa17.09■□□□□ 0.33
CLN3-253ENST00000636977 DOCK2Q92608 1830 aa17.09■□□□□ 0.33
CLN3-253ENST00000636977 CCDC87Q9NVE4 849 aa17.09■□□□□ 0.33
CLN3-253ENST00000636977 NHSL1Q5SYE7 1610 aa17.09■□□□□ 0.33
CLN3-253ENST00000636977 WNT7AO00755 349 aa17.09■□□□□ 0.33
CLN3-253ENST00000636977 PTPREP23469 700 aa17.09■□□□□ 0.33
CLN3-253ENST00000636977 NOM1Q5C9Z4 860 aaKnown RBP17.09■□□□□ 0.33
CLN3-253ENST00000636977 OLFM4Q6UX06 510 aa17.09■□□□□ 0.33
CLN3-253ENST00000636977 TRIM22Q8IYM9 498 aa17.09■□□□□ 0.33
CLN3-253ENST00000636977 NACAP1Q9BZK3 213 aa17.09■□□□□ 0.33
CLN3-253ENST00000636977 ARAP2Q8WZ64 1704 aa17.09■□□□□ 0.33
CLN3-253ENST00000636977 CASP1P29466 404 aa17.08■□□□□ 0.33
CLN3-253ENST00000636977 DYNLL1P63167 89 aaKnown RBP17.08■□□□□ 0.33
CLN3-253ENST00000636977 FBXO38Q6PIJ6 1188 aa17.08■□□□□ 0.33
CLN3-253ENST00000636977 RGS22Q8NE09 1264 aa17.08■□□□□ 0.33
CLN3-253ENST00000636977 VPS54Q9P1Q0 977 aa17.08■□□□□ 0.33
CLN3-253ENST00000636977 PNPLA7Q6ZV29 1317 aa17.08■□□□□ 0.33
CLN3-253ENST00000636977 NTSR2O95665 410 aa17.08■□□□□ 0.32
CLN3-253ENST00000636977 IGHMBP2P38935 993 aaKnown RBP17.08■□□□□ 0.32
CLN3-253ENST00000636977 POSTNQ15063 836 aa17.08■□□□□ 0.32
CLN3-253ENST00000636977 SAFBQ15424 915 aaKnown RBP eCLIP17.08■□□□□ 0.32
CLN3-253ENST00000636977 VSTM4Q8IW00 320 aa17.08■□□□□ 0.32
CLN3-253ENST00000636977 PSDA5PKW4 1024 aaPredicted RBP17.07■□□□□ 0.32
CLN3-253ENST00000636977 CCDC152Q4G0S7 254 aa17.07■□□□□ 0.32
CLN3-253ENST00000636977 CSRNP2Q9H175 543 aa17.07■□□□□ 0.32
Retrieved 100 of 20,778 RNA–protein pairs in 80 ms