RNA–Protein interactions for RNA: ENST00000597136.1

TRIM28-207, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 1,552 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-207ENST00000597136 CYP2D7A0A087X1C5 515 aa17.96■□□□□ 0.47
TRIM28-207ENST00000597136 PHF20L1A8MW92 1017 aa17.96■□□□□ 0.47
TRIM28-207ENST00000597136 DCAF15Q66K64 600 aa17.96■□□□□ 0.47
TRIM28-207ENST00000597136 DDX55Q8NHQ9 600 aaKnown RBP eCLIP17.96■□□□□ 0.473e-21■□□□□ 11.2
TRIM28-207ENST00000597136 HHIPL1Q96JK4 782 aa17.96■□□□□ 0.47
TRIM28-207ENST00000597136 CAPNS2Q96L46 248 aa17.96■□□□□ 0.47
TRIM28-207ENST00000597136 ZNF341Q9BYN7 854 aa17.96■□□□□ 0.47
TRIM28-207ENST00000597136 MCM9Q9NXL9 1143 aa17.96■□□□□ 0.47
TRIM28-207ENST00000597136 PI4KBQ9UBF8 816 aa17.96■□□□□ 0.47
TRIM28-207ENST00000597136 ZNF112Q9UJU3 913 aa17.96■□□□□ 0.47
TRIM28-207ENST00000597136 WDR33Q9C0J8 1336 aaKnown RBP17.96■□□□□ 0.46
TRIM28-207ENST00000597136 FAM155AB1AL88 458 aaPredicted RBP17.96■□□□□ 0.46
TRIM28-207ENST00000597136 AOC2O75106 756 aa17.96■□□□□ 0.46
TRIM28-207ENST00000597136 MAP3K9P80192 1104 aa17.96■□□□□ 0.46
TRIM28-207ENST00000597136 RRP1BQ14684 758 aaKnown RBP17.96■□□□□ 0.46
TRIM28-207ENST00000597136 CWC27Q6UX04 472 aaKnown RBP17.96■□□□□ 0.46
TRIM28-207ENST00000597136 HOOK2Q96ED9 719 aa17.96■□□□□ 0.46
TRIM28-207ENST00000597136 WRNIP1Q96S55 665 aa17.96■□□□□ 0.46
TRIM28-207ENST00000597136 DHX36Q9H2U1 1008 aaKnown RBP17.96■□□□□ 0.46
TRIM28-207ENST00000597136 FOXP2O15409 715 aa17.95■□□□□ 0.46
TRIM28-207ENST00000597136 VPS53Q5VIR6 699 aa17.95■□□□□ 0.46
TRIM28-207ENST00000597136 ZNF589Q86UQ0 364 aaPredicted RBP17.95■□□□□ 0.46
TRIM28-207ENST00000597136 ANKRD13AQ8IZ07 590 aa17.95■□□□□ 0.46
TRIM28-207ENST00000597136 CNKSR2Q8WXI2 1034 aa17.95■□□□□ 0.46
TRIM28-207ENST00000597136 BACH2Q9BYV9 841 aa17.95■□□□□ 0.46
TRIM28-207ENST00000597136 DNAJC18Q9H819 358 aa17.95■□□□□ 0.46
TRIM28-207ENST00000597136 ELP3Q9H9T3 547 aa17.95■□□□□ 0.46
TRIM28-207ENST00000597136 XPO5Q9HAV4 1204 aaKnown RBP eCLIP17.95■□□□□ 0.46
TRIM28-207ENST00000597136 HELLSQ9NRZ9 838 aa17.95■□□□□ 0.46
TRIM28-207ENST00000597136 ATP8A2Q9NTI2 1148 aa17.95■□□□□ 0.46
TRIM28-207ENST00000597136 USP17L12C9JPN9 530 aa17.94■□□□□ 0.46
TRIM28-207ENST00000597136 USP17L21D6R901 530 aa17.94■□□□□ 0.46
TRIM28-207ENST00000597136 TBC1D12O60347 775 aa17.94■□□□□ 0.46
TRIM28-207ENST00000597136 POLR3DP05423 398 aaPredicted RBP17.94■□□□□ 0.46
TRIM28-207ENST00000597136 MKRN3Q13064 507 aaKnown RBP17.94■□□□□ 0.46
TRIM28-207ENST00000597136 VGLL4Q14135 290 aa17.94■□□□□ 0.46
TRIM28-207ENST00000597136 MCMDC2Q4G0Z9 681 aa17.94■□□□□ 0.46
TRIM28-207ENST00000597136 RASAL3Q86YV0 1011 aa17.94■□□□□ 0.46
TRIM28-207ENST00000597136 RUFY2Q8WXA3 655 aa17.94■□□□□ 0.46
TRIM28-207ENST00000597136 SLC10A4Q96EP9 437 aa17.94■□□□□ 0.46
TRIM28-207ENST00000597136 ESYT1Q9BSJ8 1104 aa17.94■□□□□ 0.46
TRIM28-207ENST00000597136 IL25Q9H293 177 aa17.94■□□□□ 0.46
TRIM28-207ENST00000597136 EPB41L4AQ9HCS5 686 aaPredicted RBP17.94■□□□□ 0.46
TRIM28-207ENST00000597136 PATL2C9JE40 543 aaKnown RBP17.93■□□□□ 0.46
TRIM28-207ENST00000597136 CTR9Q6PD62 1173 aa17.93■□□□□ 0.46
TRIM28-207ENST00000597136 FOXP4Q8IVH2 680 aaPredicted RBP17.93■□□□□ 0.46
TRIM28-207ENST00000597136 FRMD4AQ9P2Q2 1039 aaPredicted RBP17.93■□□□□ 0.46
TRIM28-207ENST00000597136 SNCAIPQ9Y6H5 919 aa17.93■□□□□ 0.46
TRIM28-207ENST00000597136 SGSM2O43147 1006 aa17.92■□□□□ 0.46
TRIM28-207ENST00000597136 APPP05067 770 aa17.92■□□□□ 0.46
TRIM28-207ENST00000597136 SLC10A3P09131 477 aa17.92■□□□□ 0.46
TRIM28-207ENST00000597136 GJA5P36382 358 aa17.92■□□□□ 0.46
TRIM28-207ENST00000597136 SHROOM1Q2M3G4 852 aaPredicted RBP17.92■□□□□ 0.46
TRIM28-207ENST00000597136 METTL16Q86W50 562 aaKnown RBP17.92■□□□□ 0.46
TRIM28-207ENST00000597136 IFNL3Q8IZI9 196 aa17.92■□□□□ 0.46
TRIM28-207ENST00000597136 THSD7BQ9C0I4 1608 aa17.92■□□□□ 0.46
TRIM28-207ENST00000597136 SEC24BO95487 1268 aa17.91■□□□□ 0.46
TRIM28-207ENST00000597136 HLA-DOAP06340 250 aa17.91■□□□□ 0.46
TRIM28-207ENST00000597136 JAG1P78504 1218 aa17.91■□□□□ 0.46
TRIM28-207ENST00000597136 TTC6Q86TZ1 520 aa17.91■□□□□ 0.46
TRIM28-207ENST00000597136 CCDC102AQ96A19 550 aa17.91■□□□□ 0.46
TRIM28-207ENST00000597136 DYNLL2Q96FJ2 89 aa17.91■□□□□ 0.46
TRIM28-207ENST00000597136 HERC5Q9UII4 1024 aaKnown RBP17.91■□□□□ 0.46
TRIM28-207ENST00000597136 MYH4Q9Y623 1939 aa17.91■□□□□ 0.46
TRIM28-207ENST00000597136 RAD50Q92878 1312 aa17.91■□□□□ 0.46
TRIM28-207ENST00000597136 GNAT2P19087 354 aa17.91■□□□□ 0.46
TRIM28-207ENST00000597136 ECE1P42892 770 aa17.91■□□□□ 0.46
TRIM28-207ENST00000597136 C12orf60Q5U649 245 aa17.91■□□□□ 0.46
TRIM28-207ENST00000597136 CRACR2BQ8N4Y2 399 aaPredicted RBP17.91■□□□□ 0.46
TRIM28-207ENST00000597136 SERPINB13Q9UIV8 391 aa17.91■□□□□ 0.46
TRIM28-207ENST00000597136 CSADQ9Y600 493 aa17.91■□□□□ 0.46
TRIM28-207ENST00000597136 LAMA4Q16363 1823 aa17.91■□□□□ 0.46
TRIM28-207ENST00000597136 GABPAQ06546 454 aa17.9■□□□□ 0.46
TRIM28-207ENST00000597136 SPRYD7Q5W111 196 aa17.9■□□□□ 0.46
TRIM28-207ENST00000597136 CCDC84Q86UT8 332 aaPredicted RBP17.9■□□□□ 0.46
TRIM28-207ENST00000597136 STK11IPQ8N1F8 1099 aa17.9■□□□□ 0.46
TRIM28-207ENST00000597136 SLC44A5Q8NCS7 719 aa17.9■□□□□ 0.46
TRIM28-207ENST00000597136 WNK4Q96J92 1243 aa17.9■□□□□ 0.46
TRIM28-207ENST00000597136 CCDC171Q6TFL3 1326 aa17.89■□□□□ 0.45
TRIM28-207ENST00000597136 UNCXA6NJT0 531 aa17.89■□□□□ 0.45
TRIM28-207ENST00000597136 MINDY4BA8MYZ0 360 aa17.89■□□□□ 0.45
TRIM28-207ENST00000597136 KIF23Q02241 960 aaPredicted RBP17.89■□□□□ 0.45
TRIM28-207ENST00000597136 GIMAP6Q6P9H5 292 aa17.89■□□□□ 0.45
TRIM28-207ENST00000597136 OPTNQ96CV9 577 aa17.89■□□□□ 0.45
TRIM28-207ENST00000597136 EHD4Q9H223 541 aa17.89■□□□□ 0.45
TRIM28-207ENST00000597136 CASP8AP2Q9UKL3 1982 aa17.88■□□□□ 0.45
TRIM28-207ENST00000597136 CTNND1O60716 968 aaKnown RBP17.88■□□□□ 0.45
TRIM28-207ENST00000597136 HSPD1P10809 573 aaKnown RBP17.88■□□□□ 0.45
TRIM28-207ENST00000597136 SHMT1P34896 483 aa17.88■□□□□ 0.45
TRIM28-207ENST00000597136 CAP2P40123 477 aa17.88■□□□□ 0.45
TRIM28-207ENST00000597136 TDO2P48775 406 aa17.88■□□□□ 0.45
TRIM28-207ENST00000597136 SBK1Q52WX2 424 aa17.88■□□□□ 0.45
TRIM28-207ENST00000597136 TATDN1Q6P1N9 297 aa17.88■□□□□ 0.45
TRIM28-207ENST00000597136 OTUD5Q96G74 571 aa17.88■□□□□ 0.45
TRIM28-207ENST00000597136 DDRGK1Q96HY6 314 aa17.88■□□□□ 0.45
TRIM28-207ENST00000597136 GREB1LQ9C091 1923 aaPredicted RBP17.88■□□□□ 0.45
TRIM28-207ENST00000597136 EIF5BO60841 1220 aaKnown RBP17.87■□□□□ 0.45
TRIM28-207ENST00000597136 GDF11O95390 407 aa17.87■□□□□ 0.45
TRIM28-207ENST00000597136 NOL9Q5SY16 702 aaKnown RBP17.87■□□□□ 0.45
TRIM28-207ENST00000597136 SCYL3Q8IZE3 742 aa17.87■□□□□ 0.45
Retrieved 100 of 20,778 RNA–protein pairs in 70.7 ms