RNA–Protein interactions for RNA: ENST00000596938.1

CCDC9-203, Transcript of coiled-coil domain containing 9, humanhuman

TSL 3

Gene CCDC9, Length 457 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC9-203ENST00000596938 SLC9C2Q5TAH2 1124 aa12.78□□□□□ -0.36
CCDC9-203ENST00000596938 GPAT2Q6NUI2 795 aa12.78□□□□□ -0.36
CCDC9-203ENST00000596938 C17orf99Q6UX52 265 aa12.78□□□□□ -0.36
CCDC9-203ENST00000596938 CD99L2Q8TCZ2 262 aa12.78□□□□□ -0.36
CCDC9-203ENST00000596938 TBC1D2Q9BYX2 928 aa12.78□□□□□ -0.36
CCDC9-203ENST00000596938 EFCC1Q9HA90 598 aa12.78□□□□□ -0.36
CCDC9-203ENST00000596938 PALD1Q9ULE6 856 aa12.78□□□□□ -0.36
CCDC9-203ENST00000596938 FAM196BA6NMK8 535 aa12.77□□□□□ -0.37
CCDC9-203ENST00000596938 GOLIM4O00461 696 aa12.77□□□□□ -0.37
CCDC9-203ENST00000596938 RRP1P56182 461 aaKnown RBP12.77□□□□□ -0.37
CCDC9-203ENST00000596938 RRP1BQ14684 758 aaKnown RBP12.77□□□□□ -0.37
CCDC9-203ENST00000596938 MIGA1Q8NAN2 632 aa12.77□□□□□ -0.37
CCDC9-203ENST00000596938 DNAJC2Q99543 621 aaKnown RBP12.77□□□□□ -0.37
CCDC9-203ENST00000596938 HAUS7Q99871 368 aa12.77□□□□□ -0.37
CCDC9-203ENST00000596938 RIOK1Q9BRS2 568 aaKnown RBP12.77□□□□□ -0.37
CCDC9-203ENST00000596938 GINM1Q9NU53 330 aa12.77□□□□□ -0.37
CCDC9-203ENST00000596938 PTPN22Q9Y2R2 807 aa12.77□□□□□ -0.37
CCDC9-203ENST00000596938 SLC45A1Q9Y2W3 748 aa12.77□□□□□ -0.37
CCDC9-203ENST00000596938 OTOFQ9HC10 1997 aa12.77□□□□□ -0.37
CCDC9-203ENST00000596938 LAMB1P07942 1786 aa12.76□□□□□ -0.37
CCDC9-203ENST00000596938 TCRBV5S4A2TA0A5A2 114 aa12.76□□□□□ -0.37
CCDC9-203ENST00000596938 HLA-DOAP06340 250 aa12.76□□□□□ -0.37
CCDC9-203ENST00000596938 PDE6AP16499 860 aa12.76□□□□□ -0.37
CCDC9-203ENST00000596938 CAP1Q01518 475 aa12.76□□□□□ -0.37
CCDC9-203ENST00000596938 BOLA2Q9H3K6 86 aa12.76□□□□□ -0.37
CCDC9-203ENST00000596938 PAG1Q9NWQ8 432 aa12.76□□□□□ -0.37
CCDC9-203ENST00000596938 PCDHB15Q9Y5E8 787 aa12.76□□□□□ -0.37
CCDC9-203ENST00000596938 HTTP42858 3142 aa12.75□□□□□ -0.37
CCDC9-203ENST00000596938 MAGEB6P1A0A0J9YX57 407 aa12.75□□□□□ -0.37
CCDC9-203ENST00000596938 TRIM75PA6NK02 468 aa12.75□□□□□ -0.37
CCDC9-203ENST00000596938 USP17L5A8MUK1 530 aa12.75□□□□□ -0.37
CCDC9-203ENST00000596938 SMARCA5O60264 1052 aaPredicted RBP12.75□□□□□ -0.37
CCDC9-203ENST00000596938 GNRH1P01148 92 aa12.75□□□□□ -0.37
CCDC9-203ENST00000596938 ASNSP08243 561 aa12.75□□□□□ -0.37
CCDC9-203ENST00000596938 USP5P45974 858 aa12.75□□□□□ -0.37
CCDC9-203ENST00000596938 LACTBP83111 547 aaPredicted RBP12.75□□□□□ -0.37
CCDC9-203ENST00000596938 SPP2Q13103 211 aa12.75□□□□□ -0.37
CCDC9-203ENST00000596938 KIF22Q14807 665 aa12.75□□□□□ -0.37
CCDC9-203ENST00000596938 TTC6Q86TZ1 520 aa12.75□□□□□ -0.37
CCDC9-203ENST00000596938 CRACR2BQ8N4Y2 399 aaPredicted RBP12.75□□□□□ -0.37
CCDC9-203ENST00000596938 ZNF280CQ8ND82 737 aa12.75□□□□□ -0.37
CCDC9-203ENST00000596938 PARK7Q99497 189 aaKnown RBP12.75□□□□□ -0.37
CCDC9-203ENST00000596938 WDR18Q9BV38 432 aa12.75□□□□□ -0.37
CCDC9-203ENST00000596938 BCL11AQ9H165 835 aa12.75□□□□□ -0.37
CCDC9-203ENST00000596938 EHD4Q9H223 541 aa12.75□□□□□ -0.37
CCDC9-203ENST00000596938 DNAJC18Q9H819 358 aa12.75□□□□□ -0.37
CCDC9-203ENST00000596938 ECHDC1Q9NTX5 307 aa12.75□□□□□ -0.37
CCDC9-203ENST00000596938 SAP30BPQ9UHR5 308 aaKnown RBP12.75□□□□□ -0.37
CCDC9-203ENST00000596938 ADGRA2Q96PE1 1338 aa12.74□□□□□ -0.37
CCDC9-203ENST00000596938 ZNF532Q9HCE3 1301 aa12.74□□□□□ -0.37
CCDC9-203ENST00000596938 MLLT1Q03111 559 aaPredicted RBP12.74□□□□□ -0.37
CCDC9-203ENST00000596938 SH3D19Q5HYK7 790 aa12.74□□□□□ -0.37
CCDC9-203ENST00000596938 TATDN1Q6P1N9 297 aa12.74□□□□□ -0.37
CCDC9-203ENST00000596938 GADL1Q6ZQY3 521 aa12.74□□□□□ -0.37
CCDC9-203ENST00000596938 PROCA1Q8NCQ7 364 aaPredicted RBP12.74□□□□□ -0.37
CCDC9-203ENST00000596938 EDC3Q96F86 508 aaKnown RBP12.74□□□□□ -0.37
CCDC9-203ENST00000596938 TRIM34Q9BYJ4 488 aa12.74□□□□□ -0.37
CCDC9-203ENST00000596938 CRNKL1Q9BZJ0 848 aaKnown RBP12.74□□□□□ -0.37
CCDC9-203ENST00000596938 DDX24Q9GZR7 859 aaKnown RBP eCLIP12.74□□□□□ -0.37
CCDC9-203ENST00000596938 AS3MTQ9HBK9 375 aa12.74□□□□□ -0.37
CCDC9-203ENST00000596938 CPA4Q9UI42 421 aa12.74□□□□□ -0.37
CCDC9-203ENST00000596938 AGTPBP1Q9UPW5 1226 aa12.74□□□□□ -0.37
CCDC9-203ENST00000596938 CYP2C8P10632 490 aa12.73□□□□□ -0.37
CCDC9-203ENST00000596938 BCRP11274 1271 aa12.73□□□□□ -0.37
CCDC9-203ENST00000596938 ADD2P35612 726 aa12.73□□□□□ -0.37
CCDC9-203ENST00000596938 PRMT2P55345 433 aa12.73□□□□□ -0.37
CCDC9-203ENST00000596938 JAG1P78504 1218 aa12.73□□□□□ -0.37
CCDC9-203ENST00000596938 UBE3CQ15386 1083 aa12.73□□□□□ -0.37
CCDC9-203ENST00000596938 CCDC84Q86UT8 332 aaPredicted RBP12.73□□□□□ -0.37
CCDC9-203ENST00000596938 YTHDC1Q96MU7 727 aaKnown RBP12.73□□□□□ -0.37
CCDC9-203ENST00000596938 FRMD4AQ9P2Q2 1039 aaPredicted RBP12.73□□□□□ -0.37
CCDC9-203ENST00000596938 SERPINB13Q9UIV8 391 aa12.73□□□□□ -0.37
CCDC9-203ENST00000596938 C19orf81C9J6K1 198 aa12.72□□□□□ -0.37
CCDC9-203ENST00000596938 HOXD10P28358 340 aa12.72□□□□□ -0.37
CCDC9-203ENST00000596938 AAMPQ13685 434 aa12.72□□□□□ -0.37
CCDC9-203ENST00000596938 ZSCAN25Q6NSZ9 544 aa12.72□□□□□ -0.37
CCDC9-203ENST00000596938 ARMC5Q96C12 935 aa12.72□□□□□ -0.37
CCDC9-203ENST00000596938 GPATCH3Q96I76 525 aa12.72□□□□□ -0.37
CCDC9-203ENST00000596938 TAOK2Q9UL54 1235 aa12.72□□□□□ -0.37
CCDC9-203ENST00000596938 POLR3DP05423 398 aaPredicted RBP12.71□□□□□ -0.37
CCDC9-203ENST00000596938 PSMC4P43686 418 aa12.71□□□□□ -0.37
CCDC9-203ENST00000596938 PLCD1P51178 756 aa12.71□□□□□ -0.37
CCDC9-203ENST00000596938 SOX10P56693 466 aa12.71□□□□□ -0.37
CCDC9-203ENST00000596938 BACE1P56817 501 aa12.71□□□□□ -0.37
CCDC9-203ENST00000596938 PABPC4Q13310 644 aaKnown RBP eCLIP12.71□□□□□ -0.37
CCDC9-203ENST00000596938 CRBNQ96SW2 442 aa12.71□□□□□ -0.37
CCDC9-203ENST00000596938 ARHGAP39Q9C0H5 1083 aa12.71□□□□□ -0.37
CCDC9-203ENST00000596938 DCP1AQ9NPI6 582 aaPredicted RBP12.71□□□□□ -0.37
CCDC9-203ENST00000596938 ATP8A2Q9NTI2 1148 aa12.71□□□□□ -0.37
CCDC9-203ENST00000596938 PNMA3Q9UL41 463 aa12.71□□□□□ -0.37
CCDC9-203ENST00000596938 ZBTB21Q9ULJ3 1066 aa12.71□□□□□ -0.37
CCDC9-203ENST00000596938 CENPFP49454 3210 aa12.71□□□□□ -0.38
CCDC9-203ENST00000596938 AK9Q5TCS8 1911 aa12.7□□□□□ -0.38
CCDC9-203ENST00000596938 USP17L10C9JJH3 530 aa12.7□□□□□ -0.38
CCDC9-203ENST00000596938 CTGFP29279 349 aa12.7□□□□□ -0.38
CCDC9-203ENST00000596938 HMGCS2P54868 508 aa12.7□□□□□ -0.38
CCDC9-203ENST00000596938 GABPAQ06546 454 aa12.7□□□□□ -0.38
CCDC9-203ENST00000596938 TREML2Q5T2D2 321 aa12.7□□□□□ -0.38
CCDC9-203ENST00000596938 NBPF11Q86T75 865 aa12.7□□□□□ -0.38
CCDC9-203ENST00000596938 LCORLQ8N3X6 602 aa12.7□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 63.6 ms