RNA–Protein interactions for RNA: ENST00000574029.5

VPS53-216, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 4 BASIC

Gene VPS53, Length 585 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-216ENST00000574029 PROCA1Q8NCQ7 364 aaPredicted RBP25.93■■□□□ 1.74
VPS53-216ENST00000574029 GPR108Q9NPR9 543 aa25.93■■□□□ 1.74
VPS53-216ENST00000574029 LRP2BPQ9P2M1 347 aa25.93■■□□□ 1.74
VPS53-216ENST00000574029 FLT3LGP49771 235 aa25.92■■□□□ 1.74
VPS53-216ENST00000574029 FXR1P51114 621 aaKnown RBP eCLIP25.92■■□□□ 1.74
VPS53-216ENST00000574029 IRF5Q13568 498 aa25.92■■□□□ 1.74
VPS53-216ENST00000574029 POLA2Q14181 598 aa25.92■■□□□ 1.74
VPS53-216ENST00000574029 TEX11Q8IYF3 940 aa25.92■■□□□ 1.74
VPS53-216ENST00000574029 TMEM57Q8N5G2 664 aa25.92■■□□□ 1.74
VPS53-216ENST00000574029 PXYLP1Q8TE99 480 aa25.92■■□□□ 1.74
VPS53-216ENST00000574029 TBC1D2Q9BYX2 928 aa25.92■■□□□ 1.74
VPS53-216ENST00000574029 SIPA1L1O43166 1804 aa25.91■■□□□ 1.74
VPS53-216ENST00000574029 TNPO2O14787 897 aaKnown RBP25.91■■□□□ 1.74
VPS53-216ENST00000574029 ADCY3O60266 1144 aa25.91■■□□□ 1.74
VPS53-216ENST00000574029 CAP2P40123 477 aa25.91■■□□□ 1.74
VPS53-216ENST00000574029 SPP2Q13103 211 aa25.91■■□□□ 1.74
VPS53-216ENST00000574029 RRP1BQ14684 758 aaKnown RBP25.91■■□□□ 1.74
VPS53-216ENST00000574029 ZKSCAN2Q63HK3 967 aa25.91■■□□□ 1.74
VPS53-216ENST00000574029 ZNF280CQ8ND82 737 aa25.91■■□□□ 1.74
VPS53-216ENST00000574029 HERC5Q9UII4 1024 aaKnown RBP25.91■■□□□ 1.74
VPS53-216ENST00000574029 PNMA3Q9UL41 463 aa25.91■■□□□ 1.74
VPS53-216ENST00000574029 CDK5RAP2Q96SN8 1893 aa25.9■■□□□ 1.74
VPS53-216ENST00000574029 TNNI3KQ59H18 835 aa25.9■■□□□ 1.74
VPS53-216ENST00000574029 ANKRD13CQ8N6S4 541 aa25.9■■□□□ 1.74
VPS53-216ENST00000574029 SH3RF3Q8TEJ3 882 aaPredicted RBP25.9■■□□□ 1.74
VPS53-216ENST00000574029 U2AF1L4Q8WU68 220 aaKnown RBP25.9■■□□□ 1.74
VPS53-216ENST00000574029 UNC93B1Q9H1C4 597 aa25.9■■□□□ 1.74
VPS53-216ENST00000574029 FPGT-TNNI3KV9GXZ4 949 aa25.9■■□□□ 1.74
VPS53-216ENST00000574029 FOCADQ5VW36 1801 aa25.89■■□□□ 1.74
VPS53-216ENST00000574029 FAM110CQ1W6H9 321 aa25.89■■□□□ 1.74
VPS53-216ENST00000574029 SSH3Q8TE77 659 aa25.89■■□□□ 1.74
VPS53-216ENST00000574029 NOL10Q9BSC4 688 aaKnown RBP25.89■■□□□ 1.74
VPS53-216ENST00000574029 USP17L5A8MUK1 530 aa25.88■■□□□ 1.73
VPS53-216ENST00000574029 ELNP15502 786 aa25.88■■□□□ 1.73
VPS53-216ENST00000574029 PPP4CP60510 307 aa25.88■■□□□ 1.73
VPS53-216ENST00000574029 ATP8B2P98198 1209 aa25.88■■□□□ 1.73
VPS53-216ENST00000574029 TTC39AQ5SRH9 613 aa25.88■■□□□ 1.73
VPS53-216ENST00000574029 NAA16Q6N069 864 aaPredicted RBP25.88■■□□□ 1.73
VPS53-216ENST00000574029 DPF3Q92784 378 aa25.88■■□□□ 1.73
VPS53-216ENST00000574029 DBNDD2Q9BQY9 259 aa25.88■■□□□ 1.73
VPS53-216ENST00000574029 DHX36Q9H2U1 1008 aaKnown RBP25.88■■□□□ 1.73
VPS53-216ENST00000574029 SNRKQ9NRH2 765 aa25.88■■□□□ 1.73
VPS53-216ENST00000574029 AATFQ9NY61 560 aaKnown RBP eCLIP25.88■■□□□ 1.73
VPS53-216ENST00000574029 PI4KBQ9UBF8 816 aa25.88■■□□□ 1.73
VPS53-216ENST00000574029 SGPL1O95470 568 aa25.87■■□□□ 1.73
VPS53-216ENST00000574029 BAG3O95817 575 aa25.87■■□□□ 1.73
VPS53-216ENST00000574029 INHAP05111 366 aa25.87■■□□□ 1.73
VPS53-216ENST00000574029 SH3D19Q5HYK7 790 aa25.87■■□□□ 1.73
VPS53-216ENST00000574029 CCDC158Q5M9N0 1113 aa25.87■■□□□ 1.73
VPS53-216ENST00000574029 COA7Q96BR5 231 aa25.87■■□□□ 1.73
VPS53-216ENST00000574029 ZNF512BQ96KM6 892 aaPredicted RBP25.87■■□□□ 1.73
VPS53-216ENST00000574029 MYO5AQ9Y4I1 1855 aaKnown RBP25.87■■□□□ 1.73
VPS53-216ENST00000574029 PLCG2P16885 1265 aa25.86■■□□□ 1.73
VPS53-216ENST00000574029 GCLCP48506 637 aaPredicted RBP25.86■■□□□ 1.73
VPS53-216ENST00000574029 HMGCS2P54868 508 aa25.86■■□□□ 1.73
VPS53-216ENST00000574029 PABPC4Q13310 644 aaKnown RBP eCLIP25.86■■□□□ 1.73
VPS53-216ENST00000574029 HTATIP2Q9BUP3 242 aa25.86■■□□□ 1.73
VPS53-216ENST00000574029 AS3MTQ9HBK9 375 aa25.86■■□□□ 1.73
VPS53-216ENST00000574029 DOCK3Q8IZD9 2030 aa25.86■■□□□ 1.73
VPS53-216ENST00000574029 IGSF3O75054 1194 aa25.85■■□□□ 1.73
VPS53-216ENST00000574029 CYP2E1P05181 493 aaPredicted RBP25.85■■□□□ 1.73
VPS53-216ENST00000574029 CAPN2P17655 700 aa25.85■■□□□ 1.73
VPS53-216ENST00000574029 ADGRA1Q86SQ6 560 aa25.85■■□□□ 1.73
VPS53-216ENST00000574029 SURF6O75683 361 aaKnown RBP25.84■■□□□ 1.73
VPS53-216ENST00000574029 FARP2O94887 1054 aaPredicted RBP25.84■■□□□ 1.73
VPS53-216ENST00000574029 OS9Q13438 667 aaPredicted RBP25.84■■□□□ 1.73
VPS53-216ENST00000574029 METTL16Q86W50 562 aaKnown RBP25.84■■□□□ 1.73
VPS53-216ENST00000574029 WDR18Q9BV38 432 aa25.84■■□□□ 1.73
VPS53-216ENST00000574029 ASCC2Q9H1I8 757 aaPredicted RBP25.84■■□□□ 1.73
VPS53-216ENST00000574029 TGFBRAP1Q8WUH2 860 aa25.83■■□□□ 1.73
VPS53-216ENST00000574029 PAK6Q9NQU5 681 aaPredicted RBP25.83■■□□□ 1.73
VPS53-216ENST00000574029 NOP58Q9Y2X3 529 aaKnown RBP25.83■■□□□ 1.73
VPS53-216ENST00000574029 FLT1P17948 1338 aa25.83■■□□□ 1.73
VPS53-216ENST00000574029 CHRDL2Q6WN34 429 aa25.82■■□□□ 1.72
VPS53-216ENST00000574029 FOXP4Q8IVH2 680 aaPredicted RBP25.82■■□□□ 1.72
VPS53-216ENST00000574029 MAPKAPK5Q8IW41 473 aa25.82■■□□□ 1.72
VPS53-216ENST00000574029 C1orf115Q9H7X2 142 aa25.82■■□□□ 1.72
VPS53-216ENST00000574029 DNAJC18Q9H819 358 aa25.82■■□□□ 1.72
VPS53-216ENST00000574029 ASNSP08243 561 aa25.81■■□□□ 1.72
VPS53-216ENST00000574029 ZAP70P43403 619 aa25.81■■□□□ 1.72
VPS53-216ENST00000574029 JAG1P78504 1218 aa25.81■■□□□ 1.72
VPS53-216ENST00000574029 DEFB118Q96PH6 123 aa25.81■■□□□ 1.72
VPS53-216ENST00000574029 PIH1D3Q9NQM4 214 aaKnown RBP25.81■■□□□ 1.72
VPS53-216ENST00000574029 DBNLQ9UJU6 430 aaKnown RBP25.81■■□□□ 1.72
VPS53-216ENST00000574029 TAOK2Q9UL54 1235 aa25.81■■□□□ 1.72
VPS53-216ENST00000574029 ZBTB7BO15156 539 aaPredicted RBP25.8■■□□□ 1.72
VPS53-216ENST00000574029 BACE1P56817 501 aa25.8■■□□□ 1.72
VPS53-216ENST00000574029 MTMR2Q13614 643 aa25.8■■□□□ 1.72
VPS53-216ENST00000574029 CRISPLD2Q9H0B8 497 aa25.8■■□□□ 1.72
VPS53-216ENST00000574029 GINM1Q9NU53 330 aa25.8■■□□□ 1.72
VPS53-216ENST00000574029 MORF4L1Q9UBU8 362 aa25.8■■□□□ 1.72
VPS53-216ENST00000574029 PLXNB2O15031 1838 aa25.79■■□□□ 1.72
VPS53-216ENST00000574029 TFRCP02786 760 aaKnown RBP25.79■■□□□ 1.72
VPS53-216ENST00000574029 HOXA7P31268 230 aaPredicted RBP25.79■■□□□ 1.72
VPS53-216ENST00000574029 DIEXFQ68CQ4 756 aaKnown RBP25.79■■□□□ 1.72
VPS53-216ENST00000574029 GJD2Q9UKL4 321 aa25.79■■□□□ 1.72
VPS53-216ENST00000574029 PALD1Q9ULE6 856 aa25.79■■□□□ 1.72
VPS53-216ENST00000574029 NR2E3Q9Y5X4 410 aa25.79■■□□□ 1.72
VPS53-216ENST00000574029 FTSJ3Q8IY81 847 aaKnown RBP25.78■■□□□ 1.72
VPS53-216ENST00000574029 CRACR2BQ8N4Y2 399 aaPredicted RBP25.78■■□□□ 1.72
Retrieved 100 of 20,778 RNA–protein pairs in 21 ms