RNA–Protein interactions for RNA: ENST00000571805.5

VPS53-211, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS53, Length 2,356 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-211ENST00000571805 TMTC2Q8N394 836 aa26.24■■□□□ 1.79
VPS53-211ENST00000571805 NIP7Q9Y221 180 aaKnown RBP eCLIP26.24■■□□□ 1.79
VPS53-211ENST00000571805 MYL5Q02045 173 aa26.23■■□□□ 1.79
VPS53-211ENST00000571805 E4F1Q66K89 784 aaPredicted RBP26.23■■□□□ 1.79
VPS53-211ENST00000571805 ADGRA1Q86SQ6 560 aa26.23■■□□□ 1.79
VPS53-211ENST00000571805 FOXP1Q9H334 677 aaPredicted RBP26.23■■□□□ 1.79
VPS53-211ENST00000571805 COL22A1Q8NFW1 1626 aaPredicted RBP26.22■■□□□ 1.79
VPS53-211ENST00000571805 LOC102724428A0A0B4J2F2 783 aa26.22■■□□□ 1.79
VPS53-211ENST00000571805 RCAN1P53805 252 aa26.22■■□□□ 1.79
VPS53-211ENST00000571805 SIK1P57059 783 aa26.22■■□□□ 1.79
VPS53-211ENST00000571805 SAFBQ15424 915 aaKnown RBP eCLIP26.22■■□□□ 1.79
VPS53-211ENST00000571805 CNNM3Q8NE01 707 aa26.22■■□□□ 1.79
VPS53-211ENST00000571805 DEXIO95424 95 aa26.22■■□□□ 1.79
VPS53-211ENST00000571805 PPARAQ07869 468 aa26.22■■□□□ 1.79
VPS53-211ENST00000571805 RNF41Q9H4P4 317 aaPredicted RBP26.22■■□□□ 1.79
VPS53-211ENST00000571805 PCDHA5Q9Y5H7 936 aa26.22■■□□□ 1.79
VPS53-211ENST00000571805 ERICH2A1L162 156 aa26.21■■□□□ 1.79
VPS53-211ENST00000571805 SFPQP23246 707 aaKnown RBP eCLIP26.21■■□□□ 1.79
VPS53-211ENST00000571805 DHX8Q14562 1220 aaKnown RBP26.21■■□□□ 1.79
VPS53-211ENST00000571805 NAA30Q147X3 362 aaPredicted RBP26.21■■□□□ 1.79
VPS53-211ENST00000571805 FANCBQ8NB91 859 aa26.21■■□□□ 1.79
VPS53-211ENST00000571805 ZMYND15Q9H091 742 aa26.21■■□□□ 1.79
VPS53-211ENST00000571805 FBXO2Q9UK22 296 aaPredicted RBP26.21■■□□□ 1.79
VPS53-211ENST00000571805 CYP7A1P22680 504 aa26.21■■□□□ 1.79
VPS53-211ENST00000571805 KCNJ6P48051 423 aa26.21■■□□□ 1.79
VPS53-211ENST00000571805 ZNF654Q8IZM8 581 aa26.21■■□□□ 1.79
VPS53-211ENST00000571805 CMTR1Q8N1G2 835 aaKnown RBP26.21■■□□□ 1.79
VPS53-211ENST00000571805 ACSBG1Q96GR2 724 aa26.21■■□□□ 1.79
VPS53-211ENST00000571805 CCDC196A0A1B0GTZ2 297 aa26.2■■□□□ 1.79
VPS53-211ENST00000571805 BMP6P22004 513 aa26.2■■□□□ 1.79
VPS53-211ENST00000571805 PTPREP23469 700 aa26.2■■□□□ 1.79
VPS53-211ENST00000571805 GRIN1Q05586 938 aa26.2■■□□□ 1.79
VPS53-211ENST00000571805 RILPL1Q5EBL4 403 aa26.2■■□□□ 1.79
VPS53-211ENST00000571805 SPECC1Q5M775 1068 aa26.2■■□□□ 1.79
VPS53-211ENST00000571805 CCDC82Q8N4S0 544 aa26.2■■□□□ 1.79
VPS53-211ENST00000571805 DPF2Q92785 391 aa26.2■■□□□ 1.79
VPS53-211ENST00000571805 CDCA7Q9BWT1 371 aaPredicted RBP26.2■■□□□ 1.79
VPS53-211ENST00000571805 ZNF804BA4D1E1 1349 aa26.2■■□□□ 1.78
VPS53-211ENST00000571805 FOXN1O15353 648 aa26.2■■□□□ 1.78
VPS53-211ENST00000571805 ANAPC4Q9UJX5 808 aa26.2■■□□□ 1.78
VPS53-211ENST00000571805 IQSEC3Q9UPP2 1182 aaPredicted RBP26.2■■□□□ 1.78
VPS53-211ENST00000571805 SEC23AQ15436 765 aa26.19■■□□□ 1.78
VPS53-211ENST00000571805 DDB1Q16531 1140 aa26.19■■□□□ 1.78
VPS53-211ENST00000571805 SDR42E1Q8WUS8 393 aa26.19■■□□□ 1.78
VPS53-211ENST00000571805 CICQ96RK0 1608 aaPredicted RBP26.18■■□□□ 1.78
VPS53-211ENST00000571805 PSDA5PKW4 1024 aaPredicted RBP26.18■■□□□ 1.78
VPS53-211ENST00000571805 UBASH3AP57075 661 aa26.18■■□□□ 1.78
VPS53-211ENST00000571805 NR5A1Q13285 461 aa26.18■■□□□ 1.78
VPS53-211ENST00000571805 OLFM4Q6UX06 510 aa26.18■■□□□ 1.78
VPS53-211ENST00000571805 A0A0G2JS52 829 aa26.18■■□□□ 1.78
VPS53-211ENST00000571805 KIF2AO00139 706 aaPredicted RBP26.18■■□□□ 1.78
VPS53-211ENST00000571805 PDE4BQ07343 736 aa26.18■■□□□ 1.78
VPS53-211ENST00000571805 MARCH10Q8NA82 808 aaPredicted RBP26.18■■□□□ 1.78
VPS53-211ENST00000571805 PPP1R13BQ96KQ4 1090 aa26.18■■□□□ 1.78
VPS53-211ENST00000571805 PCDHB6Q9Y5E3 794 aa26.18■■□□□ 1.78
VPS53-211ENST00000571805 SPATA31A1Q5TZJ5 1347 aa26.18■■□□□ 1.78
VPS53-211ENST00000571805 SMIM22K7EJ46 135 aa26.17■■□□□ 1.78
VPS53-211ENST00000571805 MYO1BO43795 1136 aa26.17■■□□□ 1.78
VPS53-211ENST00000571805 KIF18AQ8NI77 898 aa26.17■■□□□ 1.78
VPS53-211ENST00000571805 NUP133Q8WUM0 1156 aa26.17■■□□□ 1.78
VPS53-211ENST00000571805 UBAC1Q9BSL1 405 aa26.17■■□□□ 1.78
VPS53-211ENST00000571805 MAGEB6P1A0A0J9YX57 407 aa26.17■■□□□ 1.78
VPS53-211ENST00000571805 MINDY4BA8MYZ0 360 aa26.17■■□□□ 1.78
VPS53-211ENST00000571805 CBFA2T2O43439 604 aa26.17■■□□□ 1.78
VPS53-211ENST00000571805 ZNF579Q8NAF0 562 aaKnown RBP26.17■■□□□ 1.78
VPS53-211ENST00000571805 OXER1Q8TDS5 423 aa26.17■■□□□ 1.78
VPS53-211ENST00000571805 RIOK1Q9BRS2 568 aaKnown RBP26.17■■□□□ 1.78
VPS53-211ENST00000571805 FANCLQ9NW38 375 aa26.17■■□□□ 1.78
VPS53-211ENST00000571805 A0A1B0GUL6 1792 aa26.16■■□□□ 1.78
VPS53-211ENST00000571805 WTIPA6NIX2 430 aaPredicted RBP26.16■■□□□ 1.78
VPS53-211ENST00000571805 GYG1P46976 350 aa26.16■■□□□ 1.78
VPS53-211ENST00000571805 SMAP1Q8IYB5 467 aaPredicted RBP26.16■■□□□ 1.78
VPS53-211ENST00000571805 CDC5LQ99459 802 aaKnown RBP26.16■■□□□ 1.78
VPS53-211ENST00000571805 ABCF2Q9UG63 623 aa26.16■■□□□ 1.78
VPS53-211ENST00000571805 MYH6P13533 1939 aa26.16■■□□□ 1.78
VPS53-211ENST00000571805 COL1A1P02452 1464 aaPredicted RBP26.16■■□□□ 1.78
VPS53-211ENST00000571805 CACNA1SQ13698 1873 aa26.16■■□□□ 1.78
VPS53-211ENST00000571805 SERPINC1P01008 464 aa26.15■■□□□ 1.78
VPS53-211ENST00000571805 NT5DC1Q5TFE4 455 aa26.15■■□□□ 1.78
VPS53-211ENST00000571805 SHISA4Q96DD7 197 aa26.15■■□□□ 1.78
VPS53-211ENST00000571805 TNKSO95271 1327 aa26.15■■□□□ 1.78
VPS53-211ENST00000571805 ROBO1Q9Y6N7 1651 aa26.15■■□□□ 1.78
VPS53-211ENST00000571805 ESR2Q92731 530 aa26.15■■□□□ 1.78
VPS53-211ENST00000571805 ZNF215Q9UL58 517 aaPredicted RBP26.15■■□□□ 1.78
VPS53-211ENST00000571805 THRAP3Q9Y2W1 955 aaKnown RBP26.15■■□□□ 1.78
VPS53-211ENST00000571805 SRPRBQ9Y5M8 271 aaKnown RBP26.15■■□□□ 1.78
VPS53-211ENST00000571805 POSTNQ15063 836 aa26.14■■□□□ 1.78
VPS53-211ENST00000571805 VSTM4Q8IW00 320 aa26.14■■□□□ 1.78
VPS53-211ENST00000571805 RNF26Q9BY78 433 aaPredicted RBP26.14■■□□□ 1.78
VPS53-211ENST00000571805 RAI14Q9P0K7 980 aa26.14■■□□□ 1.78
VPS53-211ENST00000571805 HOOK1Q9UJC3 728 aaKnown RBP26.14■■□□□ 1.78
VPS53-211ENST00000571805 MAN1B1Q9UKM7 699 aa26.14■■□□□ 1.78
VPS53-211ENST00000571805 POLR2DO15514 142 aaKnown RBP26.14■■□□□ 1.77
VPS53-211ENST00000571805 SARSP49591 514 aaKnown RBP26.14■■□□□ 1.77
VPS53-211ENST00000571805 CBX1P83916 185 aa26.14■■□□□ 1.77
VPS53-211ENST00000571805 PPP2R5BQ15173 497 aa26.14■■□□□ 1.77
VPS53-211ENST00000571805 TMX1Q9H3N1 280 aa26.14■■□□□ 1.77
VPS53-211ENST00000571805 SERTAD1Q9UHV2 236 aa26.14■■□□□ 1.77
VPS53-211ENST00000571805 MYH2Q9UKX2 1941 aa26.13■■□□□ 1.77
VPS53-211ENST00000571805 C3orf67Q6ZVT6 689 aa26.13■■□□□ 1.77
Retrieved 100 of 20,778 RNA–protein pairs in 18.5 ms