RNA–Protein interactions for RNA: ENST00000568488.5

CLK3-223, Transcript of CDC like kinase 3, humanhuman

TSL 3

Gene CLK3, Length 481 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-223ENST00000568488 DENND2AQ9ULE3 1009 aa20.2■□□□□ 0.82
CLK3-223ENST00000568488 DOCK1Q14185 1865 aa20.2■□□□□ 0.82
CLK3-223ENST00000568488 PHIPQ8WWQ0 1821 aa20.19■□□□□ 0.82
CLK3-223ENST00000568488 CDX2Q99626 313 aaPredicted RBP20.19■□□□□ 0.82
CLK3-223ENST00000568488 PEX10O60683 326 aa20.18■□□□□ 0.82
CLK3-223ENST00000568488 ZKSCAN1P17029 563 aaPredicted RBP20.18■□□□□ 0.82
CLK3-223ENST00000568488 BTDP43251 543 aa20.18■□□□□ 0.82
CLK3-223ENST00000568488 CACNB2Q08289 660 aaPredicted RBP20.18■□□□□ 0.82
CLK3-223ENST00000568488 ATP2B3Q16720 1220 aa20.18■□□□□ 0.82
CLK3-223ENST00000568488 ZGPATQ8N5A5 531 aaKnown RBP20.18■□□□□ 0.82
CLK3-223ENST00000568488 MAFAQ8NHW3 353 aaPredicted RBP20.18■□□□□ 0.82
CLK3-223ENST00000568488 ABCF2Q9UG63 623 aa20.18■□□□□ 0.82
CLK3-223ENST00000568488 LAMA2P24043 3122 aaKnown RBP20.18■□□□□ 0.82
CLK3-223ENST00000568488 SALL1Q9NSC2 1324 aa20.18■□□□□ 0.82
CLK3-223ENST00000568488 CCND3P30281 292 aaPredicted RBP20.17■□□□□ 0.82
CLK3-223ENST00000568488 PHKA1P46020 1223 aa20.17■□□□□ 0.82
CLK3-223ENST00000568488 IRX3P78415 501 aaPredicted RBP20.17■□□□□ 0.82
CLK3-223ENST00000568488 PDE3AQ14432 1141 aa20.17■□□□□ 0.82
CLK3-223ENST00000568488 NCBP3Q53F19 620 aaKnown RBP20.17■□□□□ 0.82
CLK3-223ENST00000568488 LHX8Q68G74 356 aa20.17■□□□□ 0.82
CLK3-223ENST00000568488 CCAR1Q8IX12 1150 aaKnown RBP20.17■□□□□ 0.82
CLK3-223ENST00000568488 SLF2Q8IX21 1173 aa20.17■□□□□ 0.82
CLK3-223ENST00000568488 OSBPL5Q9H0X9 879 aaPredicted RBP20.17■□□□□ 0.82
CLK3-223ENST00000568488 MORF4L1Q9UBU8 362 aa20.17■□□□□ 0.82
CLK3-223ENST00000568488 GAKO14976 1311 aa20.17■□□□□ 0.82
CLK3-223ENST00000568488 TBC1D12O60347 775 aa20.16■□□□□ 0.82
CLK3-223ENST00000568488 XRCC5P13010 732 aaKnown RBP20.16■□□□□ 0.82
CLK3-223ENST00000568488 ATG9AQ7Z3C6 839 aa20.16■□□□□ 0.82
CLK3-223ENST00000568488 TRMT44Q8IYL2 757 aaKnown RBP20.16■□□□□ 0.82
CLK3-223ENST00000568488 SOCS4Q8WXH5 440 aa20.16■□□□□ 0.82
CLK3-223ENST00000568488 SENP6Q9GZR1 1112 aaPredicted RBP20.16■□□□□ 0.82
CLK3-223ENST00000568488 SIL1Q9H173 461 aa20.16■□□□□ 0.82
CLK3-223ENST00000568488 CEP126Q9P2H0 1117 aa20.16■□□□□ 0.82
CLK3-223ENST00000568488 SPTBN5Q9NRC6 3674 aaKnown RBP20.15■□□□□ 0.82
CLK3-223ENST00000568488 USP17L5A8MUK1 530 aa20.15■□□□□ 0.82
CLK3-223ENST00000568488 SEMA3EO15041 775 aa20.15■□□□□ 0.82
CLK3-223ENST00000568488 RFX5P48382 616 aaPredicted RBP20.15■□□□□ 0.82
CLK3-223ENST00000568488 CCL14Q16627 93 aa20.15■□□□□ 0.82
CLK3-223ENST00000568488 GPRC5AQ8NFJ5 357 aa20.15■□□□□ 0.82
CLK3-223ENST00000568488 P2RX7Q99572 595 aaKnown RBP20.15■□□□□ 0.82
CLK3-223ENST00000568488 TBC1D2Q9BYX2 928 aa20.15■□□□□ 0.82
CLK3-223ENST00000568488 PRKAG2Q9UGJ0 569 aa20.15■□□□□ 0.82
CLK3-223ENST00000568488 RFX7Q2KHR2 1363 aa20.15■□□□□ 0.82
CLK3-223ENST00000568488 MYH2Q9UKX2 1941 aa20.15■□□□□ 0.82
CLK3-223ENST00000568488 EYSQ5T1H1 3165 aa20.14■□□□□ 0.82
CLK3-223ENST00000568488 ATN1P54259 1190 aaPredicted RBP20.14■□□□□ 0.81
CLK3-223ENST00000568488 SEMA6BQ9H3T3 888 aa20.14■□□□□ 0.81
CLK3-223ENST00000568488 AS3MTQ9HBK9 375 aa20.14■□□□□ 0.81
CLK3-223ENST00000568488 PLXNB2O15031 1838 aa20.13■□□□□ 0.81
CLK3-223ENST00000568488 CAP2P40123 477 aa20.13■□□□□ 0.81
CLK3-223ENST00000568488 SH3D19Q5HYK7 790 aa20.13■□□□□ 0.81
CLK3-223ENST00000568488 MYLIPQ8WY64 445 aa20.13■□□□□ 0.81
CLK3-223ENST00000568488 FAM163AQ96GL9 167 aaPredicted RBP20.13■□□□□ 0.81
CLK3-223ENST00000568488 USP44Q9H0E7 712 aa20.13■□□□□ 0.81
CLK3-223ENST00000568488 CWC22Q9HCG8 908 aaKnown RBP20.13■□□□□ 0.81
CLK3-223ENST00000568488 TMOD4Q9NZQ9 345 aa20.13■□□□□ 0.81
CLK3-223ENST00000568488 MAPK4P31152 587 aa20.12■□□□□ 0.81
CLK3-223ENST00000568488 RGS2P41220 211 aa20.12■□□□□ 0.81
CLK3-223ENST00000568488 RRP1BQ14684 758 aaKnown RBP20.12■□□□□ 0.81
CLK3-223ENST00000568488 SPTY2D1Q68D10 685 aaPredicted RBP20.12■□□□□ 0.81
CLK3-223ENST00000568488 SYMPKQ92797 1274 aaKnown RBP20.12■□□□□ 0.81
CLK3-223ENST00000568488 TXNRD2Q9NNW7 524 aa20.12■□□□□ 0.81
CLK3-223ENST00000568488 COL2A1P02458 1487 aaPredicted RBP20.11■□□□□ 0.81
CLK3-223ENST00000568488 MROH7-TTC4A0A0A0MT08 1334 aa20.11■□□□□ 0.81
CLK3-223ENST00000568488 ADORA1P30542 326 aa20.11■□□□□ 0.81
CLK3-223ENST00000568488 HERVK_113P62684 666 aa20.11■□□□□ 0.81
CLK3-223ENST00000568488 MTMR2Q13614 643 aa20.11■□□□□ 0.81
CLK3-223ENST00000568488 CCDC102BQ68D86 513 aa20.11■□□□□ 0.81
CLK3-223ENST00000568488 PAGR1Q9BTK6 254 aa20.11■□□□□ 0.81
CLK3-223ENST00000568488 DNAH12Q6ZR08 3092 aa20.11■□□□□ 0.81
CLK3-223ENST00000568488 LOC285556D6RIA3 1793 aa20.11■□□□□ 0.81
CLK3-223ENST00000568488 RHBDL3P58872 404 aa20.1■□□□□ 0.81
CLK3-223ENST00000568488 SHHQ15465 462 aa20.1■□□□□ 0.81
CLK3-223ENST00000568488 Q3C1V9 767 aa20.1■□□□□ 0.81
CLK3-223ENST00000568488 GPR142Q7Z601 462 aa20.1■□□□□ 0.81
CLK3-223ENST00000568488 USP6NLQ92738 828 aa20.1■□□□□ 0.81
CLK3-223ENST00000568488 PORCNQ9H237 461 aa20.1■□□□□ 0.81
CLK3-223ENST00000568488 RBPJLQ9UBG7 517 aa20.1■□□□□ 0.81
CLK3-223ENST00000568488 GPR75-ASB3A0A0A6YYF3 556 aa20.09■□□□□ 0.81
CLK3-223ENST00000568488 COL9A1P20849 921 aa20.09■□□□□ 0.81
CLK3-223ENST00000568488 CNGA1P29973 690 aa20.09■□□□□ 0.81
CLK3-223ENST00000568488 HOXA7P31268 230 aaPredicted RBP20.09■□□□□ 0.81
CLK3-223ENST00000568488 MECOMQ03112 1051 aa20.09■□□□□ 0.81
CLK3-223ENST00000568488 RASGRF1Q13972 1273 aa20.09■□□□□ 0.81
CLK3-223ENST00000568488 ERICH6Q7L0X2 663 aa20.09■□□□□ 0.81
CLK3-223ENST00000568488 PLEKHH3Q7Z736 793 aa20.09■□□□□ 0.81
CLK3-223ENST00000568488 PRUNE2Q8WUY3 3088 aa20.09■□□□□ 0.81
CLK3-223ENST00000568488 CIAO1O76071 339 aa20.08■□□□□ 0.81
CLK3-223ENST00000568488 FOSL2P15408 326 aa20.08■□□□□ 0.81
CLK3-223ENST00000568488 BACE1P56817 501 aa20.08■□□□□ 0.81
CLK3-223ENST00000568488 RTP1P59025 263 aa20.08■□□□□ 0.81
CLK3-223ENST00000568488 ERVK-9P63128 1117 aa20.08■□□□□ 0.81
CLK3-223ENST00000568488 ERVK-24P63145 666 aa20.08■□□□□ 0.81
CLK3-223ENST00000568488 MORN1Q5T089 497 aa20.08■□□□□ 0.81
CLK3-223ENST00000568488 MRPL50Q8N5N7 158 aaKnown RBP20.08■□□□□ 0.81
CLK3-223ENST00000568488 APBA2Q99767 749 aa20.08■□□□□ 0.81
CLK3-223ENST00000568488 WDR18Q9BV38 432 aa20.08■□□□□ 0.81
CLK3-223ENST00000568488 ATP11BQ9Y2G3 1177 aa20.08■□□□□ 0.81
CLK3-223ENST00000568488 NPM3O75607 178 aaKnown RBP20.07■□□□□ 0.8
CLK3-223ENST00000568488 TIMM10P62072 90 aa20.07■□□□□ 0.8
Retrieved 100 of 20,778 RNA–protein pairs in 32.8 ms