RNA–Protein interactions for RNA: ENST00000560173.1

LDLR-211, Transcript of low density lipoprotein receptor, humanhuman

TSL 3

Gene LDLR, Length 389 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-211ENST00000560173 ZKSCAN4Q969J2 545 aaPredicted RBP11.3□□□□□ -0.6
LDLR-211ENST00000560173 CRNKL1Q9BZJ0 848 aaKnown RBP11.3□□□□□ -0.6
LDLR-211ENST00000560173 DHX36Q9H2U1 1008 aaKnown RBP11.3□□□□□ -0.6
LDLR-211ENST00000560173 ARMT1Q9H993 441 aa11.3□□□□□ -0.6
LDLR-211ENST00000560173 ZBTB4Q9P1Z0 1013 aaPredicted RBP11.3□□□□□ -0.6
LDLR-211ENST00000560173 SIPA1L1O43166 1804 aa11.3□□□□□ -0.6
LDLR-211ENST00000560173 SPDYE5A6NIY4 337 aa11.29□□□□□ -0.6
LDLR-211ENST00000560173 FAM196BA6NMK8 535 aa11.29□□□□□ -0.6
LDLR-211ENST00000560173 RNF113AO15541 343 aaKnown RBP11.29□□□□□ -0.6
LDLR-211ENST00000560173 ZFYP08048 801 aaPredicted RBP11.29□□□□□ -0.6
LDLR-211ENST00000560173 METTL16Q86W50 562 aaKnown RBP11.29□□□□□ -0.6
LDLR-211ENST00000560173 REM2Q8IYK8 340 aaPredicted RBP11.29□□□□□ -0.6
LDLR-211ENST00000560173 CNKSR2Q8WXI2 1034 aa11.29□□□□□ -0.6
LDLR-211ENST00000560173 APPBP2Q92624 585 aa11.29□□□□□ -0.6
LDLR-211ENST00000560173 OPTNQ96CV9 577 aa11.29□□□□□ -0.6
LDLR-211ENST00000560173 FSD1Q9BTV5 496 aa11.29□□□□□ -0.6
LDLR-211ENST00000560173 PUS7LQ9H0K6 701 aaKnown RBP11.29□□□□□ -0.6
LDLR-211ENST00000560173 OSBPL3Q9H4L5 887 aa11.29□□□□□ -0.6
LDLR-211ENST00000560173 PI4KBQ9UBF8 816 aa11.29□□□□□ -0.6
LDLR-211ENST00000560173 SAP30BPQ9UHR5 308 aaKnown RBP11.29□□□□□ -0.6
LDLR-211ENST00000560173 PALD1Q9ULE6 856 aa11.29□□□□□ -0.6
LDLR-211ENST00000560173 NAV1Q8NEY1 1877 aa11.28□□□□□ -0.6
LDLR-211ENST00000560173 PDE4AP27815 886 aa11.28□□□□□ -0.6
LDLR-211ENST00000560173 LRRFIP1Q32MZ4 808 aaKnown RBP11.28□□□□□ -0.6
LDLR-211ENST00000560173 ERO1BQ86YB8 467 aa11.28□□□□□ -0.6
LDLR-211ENST00000560173 OSBP2Q969R2 916 aa11.28□□□□□ -0.6
LDLR-211ENST00000560173 EVI5LQ96CN4 794 aa11.28□□□□□ -0.6
LDLR-211ENST00000560173 OTUD5Q96G74 571 aa11.28□□□□□ -0.6
LDLR-211ENST00000560173 DNAJC18Q9H819 358 aa11.28□□□□□ -0.6
LDLR-211ENST00000560173 HERC5Q9UII4 1024 aaKnown RBP11.28□□□□□ -0.6
LDLR-211ENST00000560173 LAMB1P07942 1786 aa11.28□□□□□ -0.6
LDLR-211ENST00000560173 MANSC4A6NHS7 340 aaPredicted RBP11.27□□□□□ -0.61
LDLR-211ENST00000560173 PRKAB2O43741 272 aa11.27□□□□□ -0.61
LDLR-211ENST00000560173 HLA-DOAP06340 250 aa11.27□□□□□ -0.61
LDLR-211ENST00000560173 TM4SF4P48230 202 aa11.27□□□□□ -0.61
LDLR-211ENST00000560173 SREBF2Q12772 1141 aa11.27□□□□□ -0.61
LDLR-211ENST00000560173 PPIL2Q13356 520 aa11.27□□□□□ -0.61
LDLR-211ENST00000560173 PRPF38BQ5VTL8 546 aaKnown RBP11.27□□□□□ -0.61
LDLR-211ENST00000560173 SCYL3Q8IZE3 742 aa11.27□□□□□ -0.61
LDLR-211ENST00000560173 SDR42E1Q8WUS8 393 aa11.27□□□□□ -0.61
LDLR-211ENST00000560173 STRBPQ96SI9 672 aaKnown RBP11.27□□□□□ -0.61
LDLR-211ENST00000560173 EHD4Q9H223 541 aa11.27□□□□□ -0.61
LDLR-211ENST00000560173 XPO5Q9HAV4 1204 aaKnown RBP eCLIP11.27□□□□□ -0.61
LDLR-211ENST00000560173 DCP1AQ9NPI6 582 aaPredicted RBP11.27□□□□□ -0.61
LDLR-211ENST00000560173 MYH1P12882 1939 aa11.27□□□□□ -0.61
LDLR-211ENST00000560173 M0R2C6 588 aa11.26□□□□□ -0.61
LDLR-211ENST00000560173 CTNND1O60716 968 aaKnown RBP11.26□□□□□ -0.61
LDLR-211ENST00000560173 SOX10P56693 466 aa11.26□□□□□ -0.61
LDLR-211ENST00000560173 PPATQ06203 517 aa11.26□□□□□ -0.61
LDLR-211ENST00000560173 RRP1BQ14684 758 aaKnown RBP11.26□□□□□ -0.61
LDLR-211ENST00000560173 SLC4A8Q2Y0W8 1093 aa11.26□□□□□ -0.61
LDLR-211ENST00000560173 ZMYM1Q5SVZ6 1142 aa11.26□□□□□ -0.61
LDLR-211ENST00000560173 TTC6Q86TZ1 520 aa11.26□□□□□ -0.61
LDLR-211ENST00000560173 FOXP4Q8IVH2 680 aaPredicted RBP11.26□□□□□ -0.61
LDLR-211ENST00000560173 MS4A4AQ96JQ5 239 aa11.26□□□□□ -0.61
LDLR-211ENST00000560173 PICK1Q9NRD5 415 aa11.26□□□□□ -0.61
LDLR-211ENST00000560173 ATP8A2Q9NTI2 1148 aa11.26□□□□□ -0.61
LDLR-211ENST00000560173 RNF186Q9NXI6 227 aa11.26□□□□□ -0.61
LDLR-211ENST00000560173 MCM9Q9NXL9 1143 aa11.26□□□□□ -0.61
LDLR-211ENST00000560173 SAGE1Q9NXZ1 904 aa11.26□□□□□ -0.61
LDLR-211ENST00000560173 SLC4A4Q9Y6R1 1079 aa11.26□□□□□ -0.61
LDLR-211ENST00000560173 DOCK1Q14185 1865 aa11.25□□□□□ -0.61
LDLR-211ENST00000560173 TESPA1A2RU30 521 aaPredicted RBP11.25□□□□□ -0.61
LDLR-211ENST00000560173 IGF2BP3O00425 579 aaKnown RBP eCLIP11.25□□□□□ -0.61
LDLR-211ENST00000560173 IRF6O14896 467 aa11.25□□□□□ -0.61
LDLR-211ENST00000560173 GPAA1O43292 621 aa11.25□□□□□ -0.61
LDLR-211ENST00000560173 CYP2D6P10635 497 aa11.25□□□□□ -0.61
LDLR-211ENST00000560173 PTPRAP18433 802 aa11.25□□□□□ -0.61
LDLR-211ENST00000560173 INHBEP58166 350 aa11.25□□□□□ -0.61
LDLR-211ENST00000560173 EVX2Q03828 476 aa11.25□□□□□ -0.61
LDLR-211ENST00000560173 TICAM2Q86XR7 235 aa11.25□□□□□ -0.61
LDLR-211ENST00000560173 CRACR2BQ8N4Y2 399 aaPredicted RBP11.25□□□□□ -0.61
LDLR-211ENST00000560173 BRI3BPQ8WY22 251 aa11.25□□□□□ -0.61
LDLR-211ENST00000560173 TRIM34Q9BYJ4 488 aa11.25□□□□□ -0.61
LDLR-211ENST00000560173 SERPINB13Q9UIV8 391 aa11.25□□□□□ -0.61
LDLR-211ENST00000560173 KCNH4Q9UQ05 1017 aa11.25□□□□□ -0.61
LDLR-211ENST00000560173 CCL15-CCL14A0A0B4J2E2 113 aa11.24□□□□□ -0.61
LDLR-211ENST00000560173 GSG1L2A8MUP6 293 aa11.24□□□□□ -0.61
LDLR-211ENST00000560173 TRPA1O75762 1119 aa11.24□□□□□ -0.61
LDLR-211ENST00000560173 POLR3DP05423 398 aaPredicted RBP11.24□□□□□ -0.61
LDLR-211ENST00000560173 CAP2P40123 477 aa11.24□□□□□ -0.61
LDLR-211ENST00000560173 PLCD1P51178 756 aa11.24□□□□□ -0.61
LDLR-211ENST00000560173 GTF2A2P52657 109 aa11.24□□□□□ -0.61
LDLR-211ENST00000560173 GABPAQ06546 454 aa11.24□□□□□ -0.61
LDLR-211ENST00000560173 SNAPC2Q13487 334 aa11.24□□□□□ -0.61
LDLR-211ENST00000560173 CCL15Q16663 113 aa11.24□□□□□ -0.61
LDLR-211ENST00000560173 TATDN1Q6P1N9 297 aa11.24□□□□□ -0.61
LDLR-211ENST00000560173 CENPQQ7L2Z9 268 aaPredicted RBP11.24□□□□□ -0.61
LDLR-211ENST00000560173 IFNL1Q8IU54 200 aa11.24□□□□□ -0.61
LDLR-211ENST00000560173 SEC62Q99442 399 aaKnown RBP11.24□□□□□ -0.61
LDLR-211ENST00000560173 PTPN18Q99952 460 aa11.24□□□□□ -0.61
LDLR-211ENST00000560173 PPP4R2Q9NY27 417 aa11.24□□□□□ -0.61
LDLR-211ENST00000560173 FRMD4AQ9P2Q2 1039 aaPredicted RBP11.24□□□□□ -0.61
LDLR-211ENST00000560173 TRIM6-TRIM34B2RNG4 842 aa11.23□□□□□ -0.61
LDLR-211ENST00000560173 CETPP11597 493 aa11.23□□□□□ -0.61
LDLR-211ENST00000560173 GNAT2P19087 354 aa11.23□□□□□ -0.61
LDLR-211ENST00000560173 SHMT1P34896 483 aa11.23□□□□□ -0.61
LDLR-211ENST00000560173 JAG1P78504 1218 aa11.23□□□□□ -0.61
LDLR-211ENST00000560173 GIMAP6Q6P9H5 292 aa11.23□□□□□ -0.61
LDLR-211ENST00000560173 CCDC84Q86UT8 332 aaPredicted RBP11.23□□□□□ -0.61
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