RNA–Protein interactions for RNA: ENST00000557933.5

LDLR-205, Transcript of low density lipoprotein receptor, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene LDLR, Length 2,941 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-205ENST00000557933 C10orf67Q8IYJ2 551 aa14.14□□□□□ -0.15
LDLR-205ENST00000557933 WWC3Q9ULE0 1092 aa14.14□□□□□ -0.15
LDLR-205ENST00000557933 PRKAB2O43741 272 aa14.14□□□□□ -0.15
LDLR-205ENST00000557933 DHX16O60231 1041 aaKnown RBP14.14□□□□□ -0.15
LDLR-205ENST00000557933 CCT6AP40227 531 aaKnown RBP14.14□□□□□ -0.15
LDLR-205ENST00000557933 PTPAQ15257 358 aa14.14□□□□□ -0.15
LDLR-205ENST00000557933 METTL24Q5JXM2 366 aa14.14□□□□□ -0.15
LDLR-205ENST00000557933 APOA5Q6Q788 366 aa14.14□□□□□ -0.15
LDLR-205ENST00000557933 TC2NQ8N9U0 490 aa14.14□□□□□ -0.15
LDLR-205ENST00000557933 TEX13AQ9BXU3 409 aaPredicted RBP14.14□□□□□ -0.15
LDLR-205ENST00000557933 PCDHB6Q9Y5E3 794 aa14.14□□□□□ -0.15
LDLR-205ENST00000557933 H7C1W4 665 aa14.14□□□□□ -0.15
LDLR-205ENST00000557933 IARSP41252 1262 aaKnown RBP14.14□□□□□ -0.15
LDLR-205ENST00000557933 SLC4A8Q2Y0W8 1093 aa14.14□□□□□ -0.15
LDLR-205ENST00000557933 TMEM67Q5HYA8 995 aa14.14□□□□□ -0.15
LDLR-205ENST00000557933 CDC5LQ99459 802 aaKnown RBP14.14□□□□□ -0.15
LDLR-205ENST00000557933 THRAP3Q9Y2W1 955 aaKnown RBP14.14□□□□□ -0.15
LDLR-205ENST00000557933 LAMB4A4D0S4 1761 aa14.13□□□□□ -0.15
LDLR-205ENST00000557933 CICQ96RK0 1608 aaPredicted RBP14.13□□□□□ -0.15
LDLR-205ENST00000557933 LRRFIP1Q32MZ4 808 aaKnown RBP14.13□□□□□ -0.15
LDLR-205ENST00000557933 NOM1Q5C9Z4 860 aaKnown RBP14.13□□□□□ -0.15
LDLR-205ENST00000557933 BRAPQ7Z569 592 aa14.13□□□□□ -0.15
LDLR-205ENST00000557933 RABEP2Q9H5N1 569 aa14.13□□□□□ -0.15
LDLR-205ENST00000557933 PIH1D3Q9NQM4 214 aaKnown RBP14.13□□□□□ -0.15
LDLR-205ENST00000557933 MAN1B1Q9UKM7 699 aa14.13□□□□□ -0.15
LDLR-205ENST00000557933 ANGEL1Q9UNK9 670 aaKnown RBP14.13□□□□□ -0.15
LDLR-205ENST00000557933 PRDM1O75626 825 aa14.13□□□□□ -0.15
LDLR-205ENST00000557933 NKX1-1Q15270 411 aaPredicted RBP14.13□□□□□ -0.15
LDLR-205ENST00000557933 FOXR1Q6PIV2 292 aa14.13□□□□□ -0.15
LDLR-205ENST00000557933 ACRBPQ8NEB7 543 aa14.13□□□□□ -0.15
LDLR-205ENST00000557933 UBN2Q6ZU65 1347 aa14.13□□□□□ -0.15
LDLR-205ENST00000557933 ZBTB43O43298 467 aa14.12□□□□□ -0.15
LDLR-205ENST00000557933 TRIM29Q14134 588 aa14.12□□□□□ -0.15
LDLR-205ENST00000557933 MIGA1Q8NAN2 632 aa14.12□□□□□ -0.15
LDLR-205ENST00000557933 PDE11AQ9HCR9 933 aa14.12□□□□□ -0.15
LDLR-205ENST00000557933 VPS18Q9P253 973 aa14.12□□□□□ -0.15
LDLR-205ENST00000557933 TACC3Q9Y6A5 838 aa14.12□□□□□ -0.15
LDLR-205ENST00000557933 IFIT3O14879 490 aaKnown RBP14.12□□□□□ -0.15
LDLR-205ENST00000557933 LDHAL6AQ6ZMR3 332 aa14.12□□□□□ -0.15
LDLR-205ENST00000557933 DIS3L2Q8IYB7 885 aaKnown RBP14.12□□□□□ -0.15
LDLR-205ENST00000557933 EPSTI1Q96J88 318 aa14.12□□□□□ -0.15
LDLR-205ENST00000557933 MAP3K14Q99558 947 aa14.12□□□□□ -0.15
LDLR-205ENST00000557933 CDCA7Q9BWT1 371 aaPredicted RBP14.12□□□□□ -0.15
LDLR-205ENST00000557933 GLI3P10071 1580 aa14.12□□□□□ -0.15
LDLR-205ENST00000557933 TOGARAM1Q9Y4F4 1720 aa14.12□□□□□ -0.15
LDLR-205ENST00000557933 PCDH11XQ9BZA7 1347 aa14.11□□□□□ -0.15
LDLR-205ENST00000557933 PCDH11YQ9BZA8 1340 aa14.11□□□□□ -0.15
LDLR-205ENST00000557933 ZNF532Q9HCE3 1301 aa14.11□□□□□ -0.15
LDLR-205ENST00000557933 PHKA1P46020 1223 aa14.11□□□□□ -0.15
LDLR-205ENST00000557933 TOB1P50616 345 aaPredicted RBP14.11□□□□□ -0.15
LDLR-205ENST00000557933 RAD9BQ6WBX8 426 aa14.11□□□□□ -0.15
LDLR-205ENST00000557933 CCDC191Q8NCU4 936 aa14.11□□□□□ -0.15
LDLR-205ENST00000557933 TUBE1Q9UJT0 475 aa14.11□□□□□ -0.15
LDLR-205ENST00000557933 C5P01031 1676 aa14.11□□□□□ -0.15
LDLR-205ENST00000557933 PHLPP2Q6ZVD8 1323 aa14.11□□□□□ -0.15
LDLR-205ENST00000557933 PES1O00541 588 aaKnown RBP14.11□□□□□ -0.15
LDLR-205ENST00000557933 PPARDQ03181 441 aa14.11□□□□□ -0.15
LDLR-205ENST00000557933 ZNF569Q5MCW4 686 aa14.11□□□□□ -0.15
LDLR-205ENST00000557933 FKBP15Q5T1M5 1219 aa14.11□□□□□ -0.15
LDLR-205ENST00000557933 ATL3Q6DD88 541 aa14.11□□□□□ -0.15
LDLR-205ENST00000557933 APPBP2Q92624 585 aa14.11□□□□□ -0.15
LDLR-205ENST00000557933 PNKPQ96T60 521 aa14.11□□□□□ -0.15
LDLR-205ENST00000557933 GNL3Q9BVP2 549 aaKnown RBP eCLIP14.11□□□□□ -0.15
LDLR-205ENST00000557933 GREM2Q9H772 168 aa14.11□□□□□ -0.15
LDLR-205ENST00000557933 ARMT1Q9H993 441 aa14.11□□□□□ -0.15
LDLR-205ENST00000557933 ARFGAP3Q9NP61 516 aa14.11□□□□□ -0.15
LDLR-205ENST00000557933 CABP5Q9NP86 173 aa14.11□□□□□ -0.15
LDLR-205ENST00000557933 CNNM1Q9NRU3 951 aa14.11□□□□□ -0.15
LDLR-205ENST00000557933 CALCOCO1Q9P1Z2 691 aa14.11□□□□□ -0.15
LDLR-205ENST00000557933 EFCAB8A8MWE9 144 aa14.11□□□□□ -0.15
LDLR-205ENST00000557933 WNT7AO00755 349 aa14.11□□□□□ -0.15
LDLR-205ENST00000557933 ARHGAP6O43182 974 aa14.11□□□□□ -0.15
LDLR-205ENST00000557933 ZMYND10O75800 440 aa14.11□□□□□ -0.15
LDLR-205ENST00000557933 MRPS25P82663 173 aaKnown RBP14.11□□□□□ -0.15
LDLR-205ENST00000557933 POSTNQ15063 836 aa14.11□□□□□ -0.15
LDLR-205ENST00000557933 BLZF1Q9H2G9 400 aa14.11□□□□□ -0.15
LDLR-205ENST00000557933 HPSEQ9Y251 543 aa14.11□□□□□ -0.15
LDLR-205ENST00000557933 TNS2Q63HR2 1409 aa14.1□□□□□ -0.15
LDLR-205ENST00000557933 IKBKBO14920 756 aa14.1□□□□□ -0.15
LDLR-205ENST00000557933 RBL2Q08999 1139 aa14.1□□□□□ -0.15
LDLR-205ENST00000557933 LONRF2Q1L5Z9 754 aa14.1□□□□□ -0.15
LDLR-205ENST00000557933 RESP18Q5W5W9 173 aa14.1□□□□□ -0.15
LDLR-205ENST00000557933 BPIFA3Q9BQP9 254 aa14.1□□□□□ -0.15
LDLR-205ENST00000557933 FAM217BQ9NTX9 383 aaPredicted RBP14.1□□□□□ -0.15
LDLR-205ENST00000557933 ZSWIM5Q9P217 1185 aa14.1□□□□□ -0.15
LDLR-205ENST00000557933 TRIM10Q9UDY6 481 aa14.1□□□□□ -0.15
LDLR-205ENST00000557933 THSD7AQ9UPZ6 1657 aa14.1□□□□□ -0.15
LDLR-205ENST00000557933 ZSCAN12O43309 604 aa14.1□□□□□ -0.15
LDLR-205ENST00000557933 SPECC1LQ69YQ0 1117 aa14.1□□□□□ -0.15
LDLR-205ENST00000557933 RGS22Q8NE09 1264 aa14.1□□□□□ -0.15
LDLR-205ENST00000557933 MRFAP1Q9Y605 127 aa14.1□□□□□ -0.15
LDLR-205ENST00000557933 A0A087X0B3 334 aa14.09□□□□□ -0.15
LDLR-205ENST00000557933 SH2B2O14492 632 aaPredicted RBP14.09□□□□□ -0.15
LDLR-205ENST00000557933 ENC1O14682 589 aa14.09□□□□□ -0.15
LDLR-205ENST00000557933 CBFA2T2O43439 604 aa14.09□□□□□ -0.15
LDLR-205ENST00000557933 IL2RBP14784 551 aa14.09□□□□□ -0.15
LDLR-205ENST00000557933 CD44P16070 742 aaKnown RBP14.09□□□□□ -0.15
LDLR-205ENST00000557933 ZSCAN26Q16670 478 aa14.09□□□□□ -0.15
LDLR-205ENST00000557933 EARS2Q5JPH6 523 aaKnown RBP14.09□□□□□ -0.15
LDLR-205ENST00000557933 KLHL34Q8N239 644 aa14.09□□□□□ -0.15
Retrieved 100 of 20,778 RNA–protein pairs in 88.7 ms