RNA–Protein interactions for RNA: ENST00000551516.1

CPSF6-207, Transcript of cleavage and polyadenylation specific factor 6, humanhuman

TSL 2 BASIC

Gene CPSF6, Length 234 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF6-207ENST00000551516 PEAR1Q5VY43 1037 aaPredicted RBP3.44□□□□□ -1.86
CPSF6-207ENST00000551516 PRPF40BQ6NWY9 871 aaKnown RBP3.44□□□□□ -1.86
CPSF6-207ENST00000551516 SYT9Q86SS6 491 aa3.44□□□□□ -1.86
CPSF6-207ENST00000551516 USP48Q86UV5 1035 aa3.44□□□□□ -1.86
CPSF6-207ENST00000551516 METTL16Q86W50 562 aaKnown RBP3.44□□□□□ -1.86
CPSF6-207ENST00000551516 RELL1Q8IUW5 271 aa3.44□□□□□ -1.86
CPSF6-207ENST00000551516 ZNF654Q8IZM8 581 aa3.44□□□□□ -1.86
CPSF6-207ENST00000551516 MICALL1Q8N3F8 863 aa3.44□□□□□ -1.86
CPSF6-207ENST00000551516 CEP120Q8N960 986 aa3.44□□□□□ -1.86
CPSF6-207ENST00000551516 TMEM102Q8N9M5 508 aaPredicted RBP3.44□□□□□ -1.86
CPSF6-207ENST00000551516 TRPM4Q8TD43 1214 aa3.44□□□□□ -1.86
CPSF6-207ENST00000551516 NANOS1Q8WY41 292 aaKnown RBP3.44□□□□□ -1.86
CPSF6-207ENST00000551516 DRC1Q96MC2 740 aa3.44□□□□□ -1.86
CPSF6-207ENST00000551516 NSUN5Q96P11 429 aaKnown RBP3.44□□□□□ -1.86
CPSF6-207ENST00000551516 CDK19Q9BWU1 502 aa3.44□□□□□ -1.86
CPSF6-207ENST00000551516 CAPN10Q9HC96 672 aa3.44□□□□□ -1.86
CPSF6-207ENST00000551516 AVENQ9NQS1 362 aaPredicted RBP3.44□□□□□ -1.86
CPSF6-207ENST00000551516 LATS2Q9NRM7 1088 aa3.44□□□□□ -1.86
CPSF6-207ENST00000551516 GGT7Q9UJ14 662 aa3.44□□□□□ -1.86
CPSF6-207ENST00000551516 HCN2Q9UL51 889 aa3.44□□□□□ -1.86
CPSF6-207ENST00000551516 NSFL1CQ9UNZ2 370 aaKnown RBP3.44□□□□□ -1.86
CPSF6-207ENST00000551516 EPB41L3Q9Y2J2 1087 aaPredicted RBP3.44□□□□□ -1.86
CPSF6-207ENST00000551516 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP3.44□□□□□ -1.86
CPSF6-207ENST00000551516 NUP188Q5SRE5 1749 aa3.44□□□□□ -1.86
CPSF6-207ENST00000551516 PAPPAQ13219 1627 aa3.44□□□□□ -1.86
CPSF6-207ENST00000551516 RGPD8O14715 1765 aaPredicted RBP3.43□□□□□ -1.86
CPSF6-207ENST00000551516 PCNTO95613 3336 aa3.43□□□□□ -1.86
CPSF6-207ENST00000551516 BRD4O60885 1362 aaPredicted RBP3.43□□□□□ -1.86
CPSF6-207ENST00000551516 RAB3GAP2Q9H2M9 1393 aa3.43□□□□□ -1.86
CPSF6-207ENST00000551516 FAM177BA6PVY3 158 aa3.43□□□□□ -1.86
CPSF6-207ENST00000551516 ZBTB42B2RXF5 422 aa3.43□□□□□ -1.86
CPSF6-207ENST00000551516 J3QW42 95 aa3.43□□□□□ -1.86
CPSF6-207ENST00000551516 IGSF3O75054 1194 aa3.43□□□□□ -1.86
CPSF6-207ENST00000551516 SIN3BO75182 1162 aa3.43□□□□□ -1.86
CPSF6-207ENST00000551516 SMNDC1O75940 238 aaKnown RBP eCLIP3.43□□□□□ -1.86
CPSF6-207ENST00000551516 RLBP1P12271 317 aa3.43□□□□□ -1.86
CPSF6-207ENST00000551516 MLLT1Q03111 559 aaPredicted RBP3.43□□□□□ -1.86
CPSF6-207ENST00000551516 PTPN12Q05209 780 aaKnown RBP3.43□□□□□ -1.86
CPSF6-207ENST00000551516 RAD51AP2Q09MP3 1159 aa3.43□□□□□ -1.86
CPSF6-207ENST00000551516 PWP1Q13610 501 aa3.43□□□□□ -1.86
CPSF6-207ENST00000551516 ZNF827Q17R98 1081 aa3.43□□□□□ -1.86
CPSF6-207ENST00000551516 COL13A1Q5TAT6 717 aaPredicted RBP3.43□□□□□ -1.86
CPSF6-207ENST00000551516 ZNF468Q5VIY5 522 aaPredicted RBP3.43□□□□□ -1.86
CPSF6-207ENST00000551516 HFE2Q6ZVN8 426 aa3.43□□□□□ -1.86
CPSF6-207ENST00000551516 AMIGO3Q86WK7 504 aa3.43□□□□□ -1.86
CPSF6-207ENST00000551516 CCNJLQ8IV13 435 aa3.43□□□□□ -1.86
CPSF6-207ENST00000551516 GLIS3Q8NEA6 775 aa3.43□□□□□ -1.86
CPSF6-207ENST00000551516 ASAP3Q8TDY4 903 aa3.43□□□□□ -1.86
CPSF6-207ENST00000551516 SREK1Q8WXA9 508 aaKnown RBP3.43□□□□□ -1.86
CPSF6-207ENST00000551516 ZKSCAN3Q9BRR0 538 aa3.43□□□□□ -1.86
CPSF6-207ENST00000551516 SYT17Q9BSW7 474 aa3.43□□□□□ -1.86
CPSF6-207ENST00000551516 NOC4LQ9BVI4 516 aaKnown RBP3.43□□□□□ -1.86
CPSF6-207ENST00000551516 OXCT2Q9BYC2 517 aaPredicted RBP3.43□□□□□ -1.86
CPSF6-207ENST00000551516 PBX4Q9BYU1 374 aa3.43□□□□□ -1.86
CPSF6-207ENST00000551516 PRDM11Q9NQV5 511 aa3.43□□□□□ -1.86
CPSF6-207ENST00000551516 DZANK1Q9NVP4 752 aa3.43□□□□□ -1.86
CPSF6-207ENST00000551516 DNAJB12Q9NXW2 375 aaKnown RBP3.43□□□□□ -1.86
CPSF6-207ENST00000551516 NXF1Q9UBU9 619 aaKnown RBP3.43□□□□□ -1.86
CPSF6-207ENST00000551516 PPM1HQ9ULR3 514 aa3.43□□□□□ -1.86
CPSF6-207ENST00000551516 NFAT5O94916 1531 aa3.43□□□□□ -1.86
CPSF6-207ENST00000551516 USP6P35125 1406 aa3.43□□□□□ -1.86
CPSF6-207ENST00000551516 TOPAZ1Q8N9V7 1692 aa3.43□□□□□ -1.86
CPSF6-207ENST00000551516 KIF1BO60333 1816 aa3.42□□□□□ -1.86
CPSF6-207ENST00000551516 COL24A1Q17RW2 1714 aa3.42□□□□□ -1.86
CPSF6-207ENST00000551516 GPRASP1Q5JY77 1395 aa3.42□□□□□ -1.86
CPSF6-207ENST00000551516 SBNO2Q9Y2G9 1366 aa3.42□□□□□ -1.86
CPSF6-207ENST00000551516 A0A096LPE4 126 aa3.42□□□□□ -1.86
CPSF6-207ENST00000551516 A0A1W2PPZ6 126 aa3.42□□□□□ -1.86
CPSF6-207ENST00000551516 POTECB2RU33 542 aa3.42□□□□□ -1.86
CPSF6-207ENST00000551516 PDE2AO00408 941 aaPredicted RBP3.42□□□□□ -1.86
CPSF6-207ENST00000551516 C2CD2LO14523 706 aa3.42□□□□□ -1.86
CPSF6-207ENST00000551516 TRPA1O75762 1119 aa3.42□□□□□ -1.86
CPSF6-207ENST00000551516 EIF2AK2P19525 551 aaKnown RBP3.42□□□□□ -1.86
CPSF6-207ENST00000551516 ALAS2P22557 587 aa3.42□□□□□ -1.86
CPSF6-207ENST00000551516 YY1P25490 414 aa3.42□□□□□ -1.86
CPSF6-207ENST00000551516 MAP2K3P46734 347 aa3.42□□□□□ -1.86
CPSF6-207ENST00000551516 PCBP4P57723 403 aaKnown RBP3.42□□□□□ -1.86
CPSF6-207ENST00000551516 CCDC85BQ15834 202 aaPredicted RBP3.42□□□□□ -1.86
CPSF6-207ENST00000551516 SLC15A2Q16348 729 aa3.42□□□□□ -1.86
CPSF6-207ENST00000551516 TXNRD1Q16881 649 aa3.42□□□□□ -1.86
CPSF6-207ENST00000551516 NUTM2GQ5VZR2 741 aa3.42□□□□□ -1.86
CPSF6-207ENST00000551516 CEP135Q66GS9 1140 aa3.42□□□□□ -1.86
CPSF6-207ENST00000551516 ELMSAN1Q6PJG2 1045 aa3.42□□□□□ -1.86
CPSF6-207ENST00000551516 SV2BQ7L1I2 683 aa3.42□□□□□ -1.86
CPSF6-207ENST00000551516 FAM35AQ86V20 835 aa3.42□□□□□ -1.86
CPSF6-207ENST00000551516 VPS37DQ86XT2 251 aa3.42□□□□□ -1.86
CPSF6-207ENST00000551516 NPAS3Q8IXF0 933 aa3.42□□□□□ -1.86
CPSF6-207ENST00000551516 TNFRSF25Q93038 417 aa3.42□□□□□ -1.86
CPSF6-207ENST00000551516 NXPE3Q969Y0 559 aa3.42□□□□□ -1.86
CPSF6-207ENST00000551516 TCF12Q99081 682 aa3.42□□□□□ -1.86
CPSF6-207ENST00000551516 RSRP1Q9BUV0 290 aa3.42□□□□□ -1.86
CPSF6-207ENST00000551516 CARD10Q9BWT7 1032 aa3.42□□□□□ -1.86
CPSF6-207ENST00000551516 CEP44Q9C0F1 390 aa3.42□□□□□ -1.86
CPSF6-207ENST00000551516 RASSF4Q9H2L5 321 aa3.42□□□□□ -1.86
CPSF6-207ENST00000551516 ACBD3Q9H3P7 528 aa3.42□□□□□ -1.86
CPSF6-207ENST00000551516 ABCB6Q9NP58 842 aa3.42□□□□□ -1.86
CPSF6-207ENST00000551516 PPP1R1BQ9UD71 204 aaPredicted RBP3.42□□□□□ -1.86
CPSF6-207ENST00000551516 DDX41Q9UJV9 622 aaKnown RBP3.42□□□□□ -1.86
CPSF6-207ENST00000551516 INPP5FQ9Y2H2 1132 aa3.42□□□□□ -1.86
CPSF6-207ENST00000551516 CRB1P82279 1406 aa3.42□□□□□ -1.86
Retrieved 100 of 20,778 RNA–protein pairs in 35.5 ms