RNA–Protein interactions for RNA: ENST00000549970.5

VPS29-207, Transcript of VPS29, retromer complex component, humanhuman

TSL 3 BASIC

Gene VPS29, Length 818 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-207ENST00000549970 BCL11AQ9H165 835 aa19.94■□□□□ 0.78
VPS29-207ENST00000549970 PHIPQ8WWQ0 1821 aa19.93■□□□□ 0.78
VPS29-207ENST00000549970 CDK5RAP2Q96SN8 1893 aa19.93■□□□□ 0.78
VPS29-207ENST00000549970 TRIM75PA6NK02 468 aa19.93■□□□□ 0.78
VPS29-207ENST00000549970 C17orf99Q6UX52 265 aa19.93■□□□□ 0.78
VPS29-207ENST00000549970 FASTKD5Q7L8L6 764 aaKnown RBP19.93■□□□□ 0.78
VPS29-207ENST00000549970 SIRT2Q8IXJ6 389 aa19.93■□□□□ 0.78
VPS29-207ENST00000549970 PARK7Q99497 189 aaKnown RBP19.93■□□□□ 0.78
VPS29-207ENST00000549970 ANTXR1Q9H6X2 564 aa19.93■□□□□ 0.78
VPS29-207ENST00000549970 FLT1P17948 1338 aa19.93■□□□□ 0.78
VPS29-207ENST00000549970 PTPRFP10586 1907 aa19.92■□□□□ 0.78
VPS29-207ENST00000549970 IGSF3O75054 1194 aa19.92■□□□□ 0.78
VPS29-207ENST00000549970 CYP2C8P10632 490 aa19.92■□□□□ 0.78
VPS29-207ENST00000549970 DYNLL1P63167 89 aaKnown RBP19.92■□□□□ 0.78
VPS29-207ENST00000549970 C20orf194Q5TEA3 1177 aa19.92■□□□□ 0.78
VPS29-207ENST00000549970 CLASRPQ8N2M8 674 aaKnown RBP19.92■□□□□ 0.78
VPS29-207ENST00000549970 MAGEB6Q8N7X4 407 aa19.92■□□□□ 0.78
VPS29-207ENST00000549970 KIF1BPQ96EK5 621 aa19.92■□□□□ 0.78
VPS29-207ENST00000549970 CHMP4BQ9H444 224 aaKnown RBP19.92■□□□□ 0.78
VPS29-207ENST00000549970 PTCH2Q9Y6C5 1203 aa19.92■□□□□ 0.78
VPS29-207ENST00000549970 ADGRA2Q96PE1 1338 aa19.92■□□□□ 0.78
VPS29-207ENST00000549970 FOCADQ5VW36 1801 aa19.91■□□□□ 0.78
VPS29-207ENST00000549970 ATAD5Q96QE3 1844 aa19.91■□□□□ 0.78
VPS29-207ENST00000549970 MIGA1Q8NAN2 632 aa19.91■□□□□ 0.78
VPS29-207ENST00000549970 DHX36Q9H2U1 1008 aaKnown RBP19.91■□□□□ 0.78
VPS29-207ENST00000549970 PI4KBQ9UBF8 816 aa19.91■□□□□ 0.78
VPS29-207ENST00000549970 HERC5Q9UII4 1024 aaKnown RBP19.91■□□□□ 0.78
VPS29-207ENST00000549970 SIPA1L1O43166 1804 aa19.9■□□□□ 0.78
VPS29-207ENST00000549970 MAP3K12Q12852 859 aa19.9■□□□□ 0.78
VPS29-207ENST00000549970 RRP1BQ14684 758 aaKnown RBP19.9■□□□□ 0.78
VPS29-207ENST00000549970 ARMC5Q96C12 935 aa19.9■□□□□ 0.78
VPS29-207ENST00000549970 PALD1Q9ULE6 856 aa19.9■□□□□ 0.78
VPS29-207ENST00000549970 MKI67P46013 3256 aaKnown RBP19.9■□□□□ 0.78
VPS29-207ENST00000549970 IFIT2P09913 472 aaKnown RBP19.89■□□□□ 0.77
VPS29-207ENST00000549970 CTGFP29279 349 aa19.89■□□□□ 0.77
VPS29-207ENST00000549970 CAP2P40123 477 aa19.89■□□□□ 0.77
VPS29-207ENST00000549970 SLC4A8Q2Y0W8 1093 aa19.89■□□□□ 0.77
VPS29-207ENST00000549970 SLC9C1Q4G0N8 1177 aa19.89■□□□□ 0.77
VPS29-207ENST00000549970 SAP30BPQ9UHR5 308 aaKnown RBP19.89■□□□□ 0.77
VPS29-207ENST00000549970 POTEFA5A3E0 1075 aa19.88■□□□□ 0.77
VPS29-207ENST00000549970 RAB11FIP3O75154 756 aa19.88■□□□□ 0.77
VPS29-207ENST00000549970 PSMC4P43686 418 aa19.88■□□□□ 0.77
VPS29-207ENST00000549970 SPP2Q13103 211 aa19.88■□□□□ 0.77
VPS29-207ENST00000549970 PDE3AQ14432 1141 aa19.88■□□□□ 0.77
VPS29-207ENST00000549970 CRACR2BQ8N4Y2 399 aaPredicted RBP19.88■□□□□ 0.77
VPS29-207ENST00000549970 TRIM34Q9BYJ4 488 aa19.88■□□□□ 0.77
VPS29-207ENST00000549970 PDE4DIPQ5VU43 2346 aa19.88■□□□□ 0.77
VPS29-207ENST00000549970 KIAA0100Q14667 2235 aaKnown RBP19.88■□□□□ 0.77
VPS29-207ENST00000549970 FMNL1O95466 1100 aaPredicted RBP19.87■□□□□ 0.77
VPS29-207ENST00000549970 GNRH1P01148 92 aa19.87■□□□□ 0.77
VPS29-207ENST00000549970 HLA-DOAP06340 250 aa19.87■□□□□ 0.77
VPS29-207ENST00000549970 BCRP11274 1271 aa19.87■□□□□ 0.77
VPS29-207ENST00000549970 USP5P45974 858 aa19.87■□□□□ 0.77
VPS29-207ENST00000549970 ZNF280CQ8ND82 737 aa19.87■□□□□ 0.77
VPS29-207ENST00000549970 TRIM47Q96LD4 638 aa19.87■□□□□ 0.77
VPS29-207ENST00000549970 DNAJC2Q99543 621 aaKnown RBP19.87■□□□□ 0.77
VPS29-207ENST00000549970 DNAJC18Q9H819 358 aa19.87■□□□□ 0.77
VPS29-207ENST00000549970 SLC45A1Q9Y2W3 748 aa19.87■□□□□ 0.77
VPS29-207ENST00000549970 USP17L5A8MUK1 530 aa19.86■□□□□ 0.77
VPS29-207ENST00000549970 TTF1Q15361 905 aaPredicted RBP19.86■□□□□ 0.77
VPS29-207ENST00000549970 TREML2Q5T2D2 321 aa19.86■□□□□ 0.77
VPS29-207ENST00000549970 NBPF11Q86T75 865 aa19.86■□□□□ 0.77
VPS29-207ENST00000549970 CERS3Q8IU89 383 aa19.86■□□□□ 0.77
VPS29-207ENST00000549970 FOXP4Q8IVH2 680 aaPredicted RBP19.86■□□□□ 0.77
VPS29-207ENST00000549970 SMCR8Q8TEV9 937 aaPredicted RBP19.86■□□□□ 0.77
VPS29-207ENST00000549970 ZNF333Q96JL9 665 aa19.86■□□□□ 0.77
VPS29-207ENST00000549970 TBC1D2Q9BYX2 928 aa19.86■□□□□ 0.77
VPS29-207ENST00000549970 AGTPBP1Q9UPW5 1226 aa19.86■□□□□ 0.77
VPS29-207ENST00000549970 MYH1P12882 1939 aa19.86■□□□□ 0.77
VPS29-207ENST00000549970 GOLIM4O00461 696 aa19.85■□□□□ 0.77
VPS29-207ENST00000549970 MYCP01106 439 aaPredicted RBP19.85■□□□□ 0.77
VPS29-207ENST00000549970 HMGCS2P54868 508 aa19.85■□□□□ 0.77
VPS29-207ENST00000549970 SH3TC2Q8TF17 1288 aa19.85■□□□□ 0.77
VPS29-207ENST00000549970 AS3MTQ9HBK9 375 aa19.85■□□□□ 0.77
VPS29-207ENST00000549970 SRRDQ9UH36 339 aa19.85■□□□□ 0.77
VPS29-207ENST00000549970 GDF11O95390 407 aa19.84■□□□□ 0.77
VPS29-207ENST00000549970 OSBPP22059 807 aa19.84■□□□□ 0.77
VPS29-207ENST00000549970 HOXD10P28358 340 aa19.84■□□□□ 0.77
VPS29-207ENST00000549970 PRMT2P55345 433 aa19.84■□□□□ 0.77
VPS29-207ENST00000549970 SHROOM1Q2M3G4 852 aaPredicted RBP19.84■□□□□ 0.77
VPS29-207ENST00000549970 TMED8Q6PL24 325 aaPredicted RBP19.84■□□□□ 0.77
VPS29-207ENST00000549970 METTL16Q86W50 562 aaKnown RBP19.84■□□□□ 0.77
VPS29-207ENST00000549970 PROCA1Q8NCQ7 364 aaPredicted RBP19.84■□□□□ 0.77
VPS29-207ENST00000549970 PPIL4Q8WUA2 492 aaKnown RBP eCLIP19.84■□□□□ 0.77
VPS29-207ENST00000549970 TMEM106CQ9BVX2 250 aa19.84■□□□□ 0.77
VPS29-207ENST00000549970 RBBP6Q7Z6E9 1792 aaKnown RBP19.84■□□□□ 0.77
VPS29-207ENST00000549970 LOC285556D6RIA3 1793 aa19.83■□□□□ 0.77
VPS29-207ENST00000549970 MYPNQ86TC9 1320 aa19.83■□□□□ 0.77
VPS29-207ENST00000549970 ASNSP08243 561 aa19.83■□□□□ 0.77
VPS29-207ENST00000549970 PDE6AP16499 860 aa19.83■□□□□ 0.77
VPS29-207ENST00000549970 FCGRTP55899 365 aa19.83■□□□□ 0.77
VPS29-207ENST00000549970 JAG1P78504 1218 aa19.83■□□□□ 0.77
VPS29-207ENST00000549970 SLC9C2Q5TAH2 1124 aa19.83■□□□□ 0.77
VPS29-207ENST00000549970 EDC3Q96F86 508 aaKnown RBP19.83■□□□□ 0.77
VPS29-207ENST00000549970 PNMA3Q9UL41 463 aa19.83■□□□□ 0.77
VPS29-207ENST00000549970 MGAMO43451 1857 aa19.83■□□□□ 0.76
VPS29-207ENST00000549970 MAGEB6P1A0A0J9YX57 407 aa19.82■□□□□ 0.76
VPS29-207ENST00000549970 RAET1EQ8TD07 263 aa19.82■□□□□ 0.76
VPS29-207ENST00000549970 RIOK1Q9BRS2 568 aaKnown RBP19.82■□□□□ 0.76
VPS29-207ENST00000549970 BOLA2Q9H3K6 86 aa19.82■□□□□ 0.76
Retrieved 100 of 20,778 RNA–protein pairs in 16.8 ms